Wall clock time and date at job start Mon Mar 30 2020 07:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.31892 * 119.61926 * 2 1 4 4 C 1.31856 * 121.72536 * 180.30857 * 3 2 1 5 5 C 1.38225 * 120.76634 * 359.71269 * 4 3 2 6 6 C 1.38632 * 119.16089 * 359.97438 * 5 4 3 7 7 C 1.38184 * 119.62071 * 179.73918 * 2 1 3 8 8 C 1.50704 * 120.41529 * 359.97024 * 7 2 1 9 9 O 1.45196 * 109.47016 * 179.72971 * 8 7 2 10 10 C 1.34234 * 116.99938 * 179.97438 * 9 8 7 11 11 O 1.20822 * 119.99973 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00068 * 179.97438 * 10 9 8 13 13 C 1.52992 * 109.47257 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47274 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.46907 * 179.97438 * 14 13 12 16 16 H 1.07993 * 120.00411 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99549 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00388 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99824 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47360 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47339 * 119.99977 * 19 17 15 22 22 H 1.48509 * 109.47101 * 239.99886 * 19 17 15 23 23 H 1.08999 * 109.47419 * 270.26608 * 1 2 3 24 24 H 1.09002 * 109.47351 * 30.26598 * 1 2 3 25 25 H 1.09004 * 109.47430 * 150.26371 * 1 2 3 26 26 H 1.07995 * 119.61684 * 179.72560 * 4 3 2 27 27 H 1.07996 * 120.42135 * 179.97438 * 5 4 3 28 28 H 1.07996 * 120.79400 * 179.97438 * 6 5 4 29 29 H 1.08996 * 109.46943 * 59.72726 * 8 7 2 30 30 H 1.08999 * 109.47285 * 299.72866 * 8 7 2 31 31 H 1.09004 * 109.46932 * 300.00373 * 12 10 9 32 32 H 1.08997 * 109.47392 * 59.99712 * 12 10 9 33 33 H 1.09004 * 109.47330 * 299.99977 * 13 12 10 34 34 H 1.09005 * 109.47124 * 59.99773 * 13 12 10 35 35 H 1.08999 * 109.46783 * 300.00124 * 14 13 12 36 36 H 1.09000 * 109.46608 * 60.00231 * 14 13 12 37 37 H 0.96998 * 120.00131 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1950 -0.0060 5 6 4.2267 0.0341 -0.0067 6 6 3.5766 -1.1903 -0.0003 7 6 2.1899 -1.2012 0.0055 8 6 1.4372 -2.5068 0.0121 9 8 2.3814 -3.6098 0.0105 10 6 1.8691 -4.8506 0.0164 11 8 0.6714 -5.0096 0.0222 12 6 2.7879 -6.0451 0.0146 13 6 1.9554 -7.3288 0.0217 14 6 2.8882 -8.5416 0.0192 15 6 2.0682 -9.8059 0.0268 16 1 0.9897 -9.7501 0.0324 17 6 2.6949 -11.0340 0.0267 18 7 4.0083 -11.1021 0.0194 19 14 1.6785 -12.6013 0.0353 20 1 0.2345 -12.2548 0.0422 21 1 1.9906 -13.4004 -1.1768 22 1 2.0025 -13.3947 1.2482 23 1 -0.3634 0.0048 1.0276 24 1 -0.3634 0.8876 -0.5180 25 1 -0.3634 -0.8924 -0.5097 26 1 3.9752 2.1529 -0.0103 27 1 5.3056 0.0803 -0.0121 28 1 4.1367 -2.1137 -0.0011 29 1 0.8065 -2.5671 -0.8748 30 1 0.8146 -2.5628 0.9050 31 1 3.4120 -6.0221 -0.8787 32 1 3.4214 -6.0176 0.9011 33 1 1.3310 -7.3520 0.9148 34 1 1.3222 -7.3561 -0.8651 35 1 3.5123 -8.5181 -0.8741 36 1 3.5217 -8.5145 0.9058 37 1 4.4492 -11.9661 0.0196 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847049484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:54 Heat of formation + Delta-G solvation = -94.726739 kcal Electronic energy + Delta-G solvation = -18493.757861 eV Core-core repulsion = 15427.569479 eV Total energy + Delta-G solvation = -3066.188382 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.79442 -41.07925 -37.89037 -36.16969 -34.43997 -34.07258 -33.82482 -30.23340 -29.02056 -27.71749 -25.97989 -23.80857 -22.76526 -22.51266 -21.34654 -18.86359 -18.46634 -17.84753 -17.79683 -17.28807 -16.84162 -16.46462 -16.13287 -15.67504 -15.41561 -14.60176 -14.34512 -14.30211 -14.10344 -13.82381 -13.60130 -13.39058 -13.18445 -13.14435 -12.67444 -12.55794 -12.43065 -12.33107 -12.07191 -11.69576 -11.57745 -11.39380 -11.15689 -10.71073 -10.54291 -10.51010 -9.80648 -8.20157 -6.29808 0.03922 0.27349 1.16257 1.40282 1.41031 1.52294 1.55479 2.42112 2.73468 3.13570 3.31776 3.50762 3.70662 3.85995 3.97949 4.11786 4.13668 4.14546 4.21513 4.33853 4.59257 4.63032 4.67163 4.70159 4.72281 4.91332 5.04693 5.09408 5.14057 5.18286 5.23994 5.40527 5.54338 5.71885 5.74015 5.86949 6.26739 6.70534 6.86336 6.95758 7.39090 8.91606 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.049871 B = 0.002851 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.313167 B = 9818.178252 C =10343.132529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.123 3.877 3 N -0.507 5.507 4 C 0.094 3.906 5 C -0.174 4.174 6 C -0.064 4.064 7 C -0.156 4.156 8 C 0.112 3.888 9 O -0.354 6.354 10 C 0.473 3.527 11 O -0.536 6.536 12 C -0.105 4.105 13 C -0.087 4.087 14 C 0.024 3.976 15 C -0.545 4.545 16 H 0.054 0.946 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.961 3.039 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.184 0.816 27 H 0.166 0.834 28 H 0.149 0.851 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.004 0.996 36 H 0.004 0.996 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.496 24.093 -0.041 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.014 4.014 3 N -0.217 5.217 4 C -0.063 4.063 5 C -0.193 4.193 6 C -0.090 4.090 7 C -0.158 4.158 8 C 0.039 3.961 9 O -0.271 6.271 10 C 0.318 3.682 11 O -0.425 6.425 12 C -0.142 4.142 13 C -0.125 4.125 14 C -0.013 4.013 15 C -0.583 4.583 16 H 0.072 0.928 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.786 3.214 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.108 0.892 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.201 0.799 27 H 0.183 0.817 28 H 0.167 0.833 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.209 24.756 -0.039 24.785 hybrid contribution 0.085 -1.742 0.011 1.744 sum -1.124 23.013 -0.028 23.041 Atomic orbital electron populations 1.20871 0.87485 1.04320 1.04152 1.21286 0.98044 0.87172 0.94910 1.67630 1.11375 1.28766 1.13938 1.23319 0.88994 1.00141 0.93798 1.22484 1.03163 0.92381 1.01319 1.21748 0.93549 1.00047 0.93656 1.20478 0.95653 0.94157 1.05555 1.21710 0.89845 0.80855 1.03737 1.86444 1.41317 1.15175 1.84118 1.24173 0.88791 0.84347 0.70915 1.90649 1.18399 1.86766 1.46668 1.21518 0.97703 0.87718 1.07236 1.21283 0.97702 0.92389 1.01126 1.19021 0.94448 0.91895 0.95899 1.21707 0.93521 0.92569 1.50539 0.92803 1.25894 0.96094 1.02766 0.94774 1.70067 1.09313 1.25927 1.51672 0.85461 0.79038 0.79023 0.77908 1.19096 1.20220 1.20226 0.89167 0.89735 0.89870 0.79862 0.81670 0.83300 0.89194 0.89252 0.86139 0.86138 0.93288 0.93291 0.97779 0.97784 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 9.77 71.23 0.70 -0.99 16 2 C 0.12 2.46 6.78 42.53 0.29 2.75 16 3 N -0.51 -10.49 10.27 -183.89 -1.89 -12.38 16 4 C 0.09 1.49 11.18 84.69 0.95 2.44 16 5 C -0.17 -2.55 10.11 22.36 0.23 -2.33 16 6 C -0.06 -1.19 9.49 22.47 0.21 -0.98 16 7 C -0.16 -3.19 5.90 -19.77 -0.12 -3.31 16 8 C 0.11 2.43 4.59 71.24 0.33 2.76 16 9 O -0.35 -8.86 8.77 -51.46 -0.45 -9.31 16 10 C 0.47 14.24 7.96 71.24 0.57 14.80 16 11 O -0.54 -19.28 15.73 21.98 0.35 -18.94 16 12 C -0.10 -3.19 5.81 29.85 0.17 -3.02 16 13 C -0.09 -3.57 4.44 30.59 0.14 -3.43 16 14 C 0.02 1.24 4.97 29.85 0.15 1.39 16 15 C -0.55 -31.10 9.11 25.60 0.23 -30.86 16 16 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 17 C 0.00 0.15 5.46 84.65 0.46 0.62 16 18 N -0.93 -55.51 13.29 21.45 0.28 -55.22 16 19 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 23 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.08 1.12 6.63 -2.38 -0.02 1.11 16 26 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 27 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 28 H 0.15 2.61 7.10 -2.91 -0.02 2.59 16 29 H 0.09 1.87 7.47 -2.39 -0.02 1.85 16 30 H 0.09 1.87 8.13 -2.39 -0.02 1.85 16 31 H 0.12 3.26 8.14 -2.38 -0.02 3.24 16 32 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 33 H 0.05 2.07 8.10 -2.38 -0.02 2.05 16 34 H 0.05 2.07 8.10 -2.38 -0.02 2.05 16 35 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -69.17 321.03 5.67 -63.50 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.05 Total: 6.17 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 4.30 Total: -20.16 kcal Atomic # 7 Polarization: -66.00 SS G_CDS: -1.60 Total: -67.60 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.11 Total: -28.25 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -69.17 5.67 -63.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847049484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.224 kcal (2) G-P(sol) polarization free energy of solvation -69.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds