Wall clock time and date at job start Mon Mar 30 2020 07:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31880 * 119.61546 * 2 1 4 4 C 1.31864 * 121.72275 * 179.71573 * 3 2 1 5 5 C 1.38223 * 120.76128 * 0.55431 * 4 3 2 6 6 C 1.38627 * 119.16199 * 359.72821 * 5 4 3 7 7 C 1.38177 * 119.61477 * 180.26575 * 2 1 3 8 8 C 1.50694 * 120.42129 * 359.97438 * 7 2 1 9 9 H 1.09002 * 109.47136 * 324.99430 * 8 7 2 10 10 C 1.52997 * 109.47155 * 84.99958 * 8 7 2 11 11 O 1.45205 * 109.46999 * 204.99938 * 8 7 2 12 12 C 1.34234 * 116.99849 * 149.99973 * 11 8 7 13 13 O 1.20827 * 120.00226 * 359.97438 * 12 11 8 14 14 C 1.50702 * 119.99795 * 179.97438 * 12 11 8 15 15 H 1.09002 * 109.47010 * 60.00291 * 14 12 11 16 16 C 1.52988 * 109.47389 * 300.00142 * 14 12 11 17 17 C 1.50704 * 109.46812 * 179.97438 * 14 12 11 18 18 H 1.07999 * 119.99737 * 35.11193 * 17 14 12 19 19 C 1.37884 * 119.99811 * 215.10225 * 17 14 12 20 20 N 1.31516 * 119.99711 * 184.91342 * 19 17 14 21 21 Si 1.86798 * 119.99927 * 4.91901 * 19 17 14 22 22 H 1.48494 * 109.47249 * 84.82187 * 21 19 17 23 23 H 1.48501 * 109.46860 * 204.82314 * 21 19 17 24 24 H 1.48495 * 109.47091 * 324.81948 * 21 19 17 25 25 H 1.09002 * 109.47178 * 269.73513 * 1 2 3 26 26 H 1.08997 * 109.47441 * 29.73034 * 1 2 3 27 27 H 1.08994 * 109.46990 * 149.73570 * 1 2 3 28 28 H 1.08004 * 119.61594 * 180.26855 * 4 3 2 29 29 H 1.08005 * 120.41749 * 179.75734 * 5 4 3 30 30 H 1.08001 * 120.78905 * 179.97438 * 6 5 4 31 31 H 1.08998 * 109.47230 * 60.00391 * 10 8 7 32 32 H 1.09011 * 109.46886 * 180.02562 * 10 8 7 33 33 H 1.09003 * 109.47169 * 299.99503 * 10 8 7 34 34 H 1.08998 * 109.47454 * 55.06131 * 16 14 12 35 35 H 1.09004 * 109.47570 * 175.05816 * 16 14 12 36 36 H 1.08997 * 109.47633 * 295.05865 * 16 14 12 37 37 H 0.96993 * 119.99731 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1465 0.0000 4 6 3.4765 1.1950 0.0056 5 6 4.2267 0.0341 0.0002 6 6 3.5765 -1.1903 -0.0055 7 6 2.1899 -1.2013 -0.0056 8 6 1.4372 -2.5068 -0.0110 9 1 0.5267 -2.4037 0.5793 10 6 1.0730 -2.8795 -1.4495 11 8 2.2706 -3.5483 0.5626 12 6 1.6427 -4.5507 1.1973 13 8 0.4368 -4.5574 1.2715 14 6 2.4420 -5.6678 1.8173 15 1 3.1140 -5.2584 2.5717 16 6 3.2605 -6.3718 0.7334 17 6 1.5060 -6.6569 2.4628 18 1 0.5451 -6.8627 2.0147 19 6 1.8764 -7.2992 3.6253 20 7 1.1031 -8.2322 4.1361 21 14 3.4766 -6.8439 4.4747 22 1 3.2521 -5.6714 5.3578 23 1 3.9496 -7.9929 5.2880 24 1 4.5003 -6.5057 3.4535 25 1 -0.3633 -0.0048 1.0277 26 1 -0.3634 0.8924 -0.5096 27 1 -0.3633 -0.8876 -0.5179 28 1 3.9753 2.1529 0.0098 29 1 5.3057 0.0803 0.0008 30 1 4.1367 -2.1136 -0.0102 31 1 1.9835 -2.9826 -2.0398 32 1 0.5281 -3.8236 -1.4534 33 1 0.4473 -2.0976 -1.8801 34 1 3.8736 -5.6397 0.2079 35 1 3.9043 -7.1215 1.1935 36 1 2.5869 -6.8561 0.0264 37 1 1.3638 -8.6843 4.9537 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851546859.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:48 Heat of formation + Delta-G solvation = -65.195638 kcal Electronic energy + Delta-G solvation = -19821.825768 eV Core-core repulsion = 16756.917950 eV Total energy + Delta-G solvation = -3064.907818 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.66176 -39.56717 -36.25927 -33.93451 -33.65412 -32.93490 -31.38989 -29.91642 -27.76939 -25.35797 -24.66557 -23.52905 -22.18548 -21.05580 -19.56850 -17.40969 -16.93331 -16.72326 -15.98539 -15.79452 -15.41494 -14.81403 -14.50997 -14.12341 -13.69986 -13.27679 -13.11338 -12.92612 -12.59688 -12.49929 -12.46187 -12.26793 -12.13682 -11.75733 -11.39277 -11.19176 -10.84862 -10.80634 -10.51653 -10.27758 -9.92760 -9.77463 -9.57376 -9.29927 -9.22185 -8.88111 -8.68347 -6.19141 -4.20950 0.96699 1.22519 3.12159 3.19639 3.26142 3.28211 3.31372 3.67843 4.19661 4.28696 4.54730 4.76226 4.83685 5.02140 5.12199 5.15870 5.22424 5.41586 5.43292 5.47205 5.52500 5.59871 5.82463 5.87579 6.02896 6.10000 6.11961 6.15656 6.23530 6.39850 6.47025 6.61512 6.76398 7.03503 7.18763 7.44955 7.87551 8.33920 8.73457 8.93971 9.38451 10.93269 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026649 B = 0.005181 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.432831 B = 5402.703531 C = 5762.997906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.136 3.864 3 N -0.486 5.486 4 C 0.097 3.903 5 C -0.182 4.182 6 C -0.048 4.048 7 C -0.133 4.133 8 C 0.124 3.876 9 H 0.096 0.904 10 C -0.162 4.162 11 O -0.363 6.363 12 C 0.463 3.537 13 O -0.499 6.499 14 C 0.025 3.975 15 H 0.064 0.936 16 C -0.134 4.134 17 C -0.507 4.507 18 H 0.088 0.912 19 C 0.077 3.923 20 N -0.888 5.888 21 Si 0.869 3.131 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.261 1.261 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.154 0.846 29 H 0.135 0.865 30 H 0.144 0.856 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.037 0.963 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.811 15.232 -9.678 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.001 4.001 3 N -0.196 5.196 4 C -0.060 4.060 5 C -0.201 4.201 6 C -0.074 4.074 7 C -0.135 4.135 8 C 0.068 3.932 9 H 0.113 0.887 10 C -0.219 4.219 11 O -0.282 6.282 12 C 0.306 3.694 13 O -0.384 6.384 14 C 0.005 3.995 15 H 0.082 0.918 16 C -0.192 4.192 17 C -0.544 4.544 18 H 0.106 0.894 19 C -0.126 4.126 20 N -0.524 5.524 21 Si 0.695 3.305 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.186 1.186 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.172 0.828 29 H 0.153 0.847 30 H 0.162 0.838 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.909 15.879 -9.512 19.150 hybrid contribution 1.295 -0.544 0.639 1.543 sum 6.204 15.336 -8.872 18.772 Atomic orbital electron populations 1.20869 0.88839 1.03712 1.03659 1.21034 0.96980 0.87430 0.94671 1.67552 1.10125 1.28674 1.13201 1.22720 0.89484 0.98455 0.95324 1.22146 1.01516 0.93341 1.03146 1.21552 0.93765 0.98896 0.93155 1.20573 0.94983 0.94810 1.03096 1.21177 0.93460 0.83357 0.95244 0.88658 1.22161 1.02321 1.02768 0.94667 1.86646 1.41929 1.33055 1.66562 1.25234 0.88830 0.81402 0.73908 1.90535 1.16245 1.75858 1.55726 1.19181 0.95556 0.89602 0.95114 0.91814 1.21923 0.99034 0.99769 0.98476 1.20747 1.03983 1.20658 1.09005 0.89388 1.24991 0.96713 0.94550 0.96356 1.69866 1.37604 1.23891 1.21051 0.86988 0.84490 0.78686 0.80337 1.19872 1.20905 1.18584 0.89965 0.90225 0.90263 0.82827 0.84714 0.83820 0.91617 0.91020 0.91051 0.94426 0.92340 0.92904 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.39 36.01 0.34 -0.92 16 2 C 0.14 1.82 6.78 -82.59 -0.56 1.26 16 3 N -0.49 -6.45 10.27 -9.47 -0.10 -6.55 16 4 C 0.10 1.07 11.18 -17.54 -0.20 0.88 16 5 C -0.18 -1.94 10.11 -39.44 -0.40 -2.34 16 6 C -0.05 -0.61 9.47 -39.28 -0.37 -0.99 16 7 C -0.13 -1.85 5.08 -104.49 -0.53 -2.38 16 8 C 0.12 1.91 2.09 -27.89 -0.06 1.85 16 9 H 0.10 1.57 6.02 -51.93 -0.31 1.26 16 10 C -0.16 -2.13 9.34 37.16 0.35 -1.78 16 11 O -0.36 -6.65 8.60 -39.27 -0.34 -6.99 16 12 C 0.46 10.25 7.22 36.01 0.26 10.51 16 13 O -0.50 -12.33 14.99 -18.75 -0.28 -12.61 16 14 C 0.03 0.59 2.40 -92.93 -0.22 0.36 16 15 H 0.06 1.45 5.29 -51.93 -0.27 1.18 16 16 C -0.13 -2.68 9.14 37.15 0.34 -2.34 16 17 C -0.51 -14.16 8.36 -34.44 -0.29 -14.45 16 18 H 0.09 2.77 7.61 -52.49 -0.40 2.37 16 19 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 20 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 21 Si 0.87 20.44 26.99 -169.99 -4.59 15.86 16 22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 H -0.26 -5.69 6.82 56.52 0.39 -5.31 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 0.82 5.42 -51.93 -0.28 0.53 16 28 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 29 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.14 1.78 7.44 -52.49 -0.39 1.39 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 33 H 0.07 0.78 6.91 -51.93 -0.36 0.42 16 34 H 0.04 0.64 8.00 -51.93 -0.42 0.22 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 311.83 15.07 4.70 4.70 Total: -1.00 -31.88 311.83 -6.24 -38.12 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.97 Total: 1.56 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -1.44 Total: -8.26 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.68 Total: -32.37 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.62 Total: -19.60 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.59 Total: 15.86 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.88 -6.24 -38.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851546859.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.076 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds