Wall clock time and date at job start Mon Mar 30 2020 07:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31880 * 119.61546 * 2 1 4 4 C 1.31864 * 121.72275 * 179.71573 * 3 2 1 5 5 C 1.38223 * 120.76128 * 0.55431 * 4 3 2 6 6 C 1.38627 * 119.16199 * 359.72821 * 5 4 3 7 7 C 1.38177 * 119.61477 * 180.26575 * 2 1 3 8 8 C 1.50694 * 120.42129 * 359.97438 * 7 2 1 9 9 H 1.09002 * 109.47136 * 324.99430 * 8 7 2 10 10 C 1.52997 * 109.47155 * 84.99958 * 8 7 2 11 11 O 1.45205 * 109.46999 * 204.99938 * 8 7 2 12 12 C 1.34234 * 116.99849 * 149.99973 * 11 8 7 13 13 O 1.20827 * 120.00226 * 359.97438 * 12 11 8 14 14 C 1.50702 * 119.99795 * 179.97438 * 12 11 8 15 15 H 1.09002 * 109.47010 * 60.00291 * 14 12 11 16 16 C 1.52988 * 109.47389 * 300.00142 * 14 12 11 17 17 C 1.50704 * 109.46812 * 179.97438 * 14 12 11 18 18 H 1.07999 * 119.99737 * 35.11193 * 17 14 12 19 19 C 1.37884 * 119.99811 * 215.10225 * 17 14 12 20 20 N 1.31516 * 119.99711 * 184.91342 * 19 17 14 21 21 Si 1.86798 * 119.99927 * 4.91901 * 19 17 14 22 22 H 1.48494 * 109.47249 * 84.82187 * 21 19 17 23 23 H 1.48501 * 109.46860 * 204.82314 * 21 19 17 24 24 H 1.48495 * 109.47091 * 324.81948 * 21 19 17 25 25 H 1.09002 * 109.47178 * 269.73513 * 1 2 3 26 26 H 1.08997 * 109.47441 * 29.73034 * 1 2 3 27 27 H 1.08994 * 109.46990 * 149.73570 * 1 2 3 28 28 H 1.08004 * 119.61594 * 180.26855 * 4 3 2 29 29 H 1.08005 * 120.41749 * 179.75734 * 5 4 3 30 30 H 1.08001 * 120.78905 * 179.97438 * 6 5 4 31 31 H 1.08998 * 109.47230 * 60.00391 * 10 8 7 32 32 H 1.09011 * 109.46886 * 180.02562 * 10 8 7 33 33 H 1.09003 * 109.47169 * 299.99503 * 10 8 7 34 34 H 1.08998 * 109.47454 * 55.06131 * 16 14 12 35 35 H 1.09004 * 109.47570 * 175.05816 * 16 14 12 36 36 H 1.08997 * 109.47633 * 295.05865 * 16 14 12 37 37 H 0.96993 * 119.99731 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1465 0.0000 4 6 3.4765 1.1950 0.0056 5 6 4.2267 0.0341 0.0002 6 6 3.5765 -1.1903 -0.0055 7 6 2.1899 -1.2013 -0.0056 8 6 1.4372 -2.5068 -0.0110 9 1 0.5267 -2.4037 0.5793 10 6 1.0730 -2.8795 -1.4495 11 8 2.2706 -3.5483 0.5626 12 6 1.6427 -4.5507 1.1973 13 8 0.4368 -4.5574 1.2715 14 6 2.4420 -5.6678 1.8173 15 1 3.1140 -5.2584 2.5717 16 6 3.2605 -6.3718 0.7334 17 6 1.5060 -6.6569 2.4628 18 1 0.5451 -6.8627 2.0147 19 6 1.8764 -7.2992 3.6253 20 7 1.1031 -8.2322 4.1361 21 14 3.4766 -6.8439 4.4747 22 1 3.2521 -5.6714 5.3578 23 1 3.9496 -7.9929 5.2880 24 1 4.5003 -6.5057 3.4535 25 1 -0.3633 -0.0048 1.0277 26 1 -0.3634 0.8924 -0.5096 27 1 -0.3633 -0.8876 -0.5179 28 1 3.9753 2.1529 0.0098 29 1 5.3057 0.0803 0.0008 30 1 4.1367 -2.1136 -0.0102 31 1 1.9835 -2.9826 -2.0398 32 1 0.5281 -3.8236 -1.4534 33 1 0.4473 -2.0976 -1.8801 34 1 3.8736 -5.6397 0.2079 35 1 3.9043 -7.1215 1.1935 36 1 2.5869 -6.8561 0.0264 37 1 1.3638 -8.6843 4.9537 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851546859.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:48 Heat of formation + Delta-G solvation = -84.533991 kcal Electronic energy + Delta-G solvation = -19822.664342 eV Core-core repulsion = 16756.917950 eV Total energy + Delta-G solvation = -3065.746392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.84554 -40.98145 -37.81328 -35.81567 -34.87616 -33.90044 -33.34607 -30.98377 -28.66188 -27.31589 -25.92023 -24.93598 -23.27104 -22.26354 -21.19002 -19.31689 -18.39821 -17.99990 -17.31465 -16.97645 -16.90817 -16.32407 -15.74202 -15.49983 -14.83725 -14.70256 -14.42964 -14.41243 -13.95888 -13.91510 -13.47962 -13.34942 -13.17614 -13.08325 -12.99638 -12.75662 -12.63712 -12.27713 -11.97073 -11.83009 -11.78802 -11.32906 -11.07364 -10.80093 -10.71892 -10.45686 -9.80875 -8.33757 -6.42797 0.04830 0.29450 1.32861 1.36593 1.42661 1.49140 1.76672 2.31013 2.75671 3.02738 3.32420 3.50212 3.81038 3.89923 3.95806 4.07399 4.11325 4.28555 4.33615 4.51799 4.60182 4.60475 4.64339 4.67229 4.70679 4.77780 4.88570 5.01427 5.08058 5.16113 5.19886 5.26131 5.43035 5.48735 5.57482 5.73998 6.19564 6.66321 6.97103 7.01363 7.21550 8.83114 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026649 B = 0.005181 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.432831 B = 5402.703531 C = 5762.997906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.125 3.875 3 N -0.505 5.505 4 C 0.096 3.904 5 C -0.172 4.172 6 C -0.060 4.060 7 C -0.150 4.150 8 C 0.121 3.879 9 H 0.079 0.921 10 C -0.157 4.157 11 O -0.351 6.351 12 C 0.470 3.530 13 O -0.536 6.536 14 C 0.019 3.981 15 H 0.078 0.922 16 C -0.127 4.127 17 C -0.517 4.517 18 H 0.032 0.968 19 C 0.017 3.983 20 N -0.942 5.942 21 Si 0.938 3.062 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.224 1.224 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.187 0.813 29 H 0.169 0.831 30 H 0.147 0.853 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.048 17.478 -10.364 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.012 4.012 3 N -0.215 5.215 4 C -0.061 4.061 5 C -0.192 4.192 6 C -0.086 4.086 7 C -0.152 4.152 8 C 0.066 3.934 9 H 0.097 0.903 10 C -0.214 4.214 11 O -0.269 6.269 12 C 0.314 3.686 13 O -0.424 6.424 14 C 0.000 4.000 15 H 0.096 0.904 16 C -0.185 4.185 17 C -0.555 4.555 18 H 0.050 0.950 19 C -0.181 4.181 20 N -0.580 5.580 21 Si 0.759 3.241 22 H -0.194 1.194 23 H -0.205 1.205 24 H -0.147 1.147 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.100 0.900 28 H 0.204 0.796 29 H 0.187 0.813 30 H 0.165 0.835 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.165 18.148 -10.237 22.379 hybrid contribution 0.234 -1.132 0.770 1.389 sum 8.398 17.016 -9.467 21.206 Atomic orbital electron populations 1.20903 0.88078 1.04420 1.03713 1.21230 0.97772 0.87363 0.94815 1.67619 1.11451 1.28494 1.13961 1.23360 0.88913 1.00187 0.93655 1.22483 1.03189 0.92154 1.01325 1.21744 0.93311 1.00128 0.93435 1.20460 0.95668 0.93834 1.05261 1.21390 0.92789 0.83325 0.95893 0.90298 1.22143 1.03083 1.02612 0.93539 1.86562 1.41744 1.32718 1.65841 1.24865 0.88036 0.81911 0.73763 1.90529 1.17789 1.76817 1.57304 1.19163 0.95079 0.89302 0.96500 0.90387 1.21821 0.98802 1.00456 0.97416 1.20827 1.02857 1.22271 1.09549 0.95009 1.25963 1.01149 0.94072 0.96935 1.70033 1.40409 1.25639 1.21933 0.85885 0.79999 0.78459 0.79730 1.19419 1.20498 1.14663 0.90234 0.89050 0.90016 0.79562 0.81346 0.83514 0.90381 0.92861 0.88692 0.90705 0.91734 0.93777 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.44 9.39 71.24 0.67 -1.77 16 2 C 0.13 3.16 6.78 42.54 0.29 3.44 16 3 N -0.51 -12.28 10.27 -183.88 -1.89 -14.17 16 4 C 0.10 1.78 11.18 84.68 0.95 2.73 16 5 C -0.17 -3.02 10.11 22.36 0.23 -2.80 16 6 C -0.06 -1.38 9.47 22.47 0.21 -1.17 16 7 C -0.15 -3.95 5.08 -19.78 -0.10 -4.05 16 8 C 0.12 3.68 2.09 29.85 0.06 3.74 16 9 H 0.08 2.66 6.02 -2.39 -0.01 2.64 16 10 C -0.16 -3.98 9.34 71.98 0.67 -3.31 16 11 O -0.35 -12.45 8.60 -51.45 -0.44 -12.89 16 12 C 0.47 20.86 7.22 71.24 0.51 21.37 16 13 O -0.54 -27.55 14.99 21.96 0.33 -27.22 16 14 C 0.02 0.87 2.40 -12.29 -0.03 0.84 16 15 H 0.08 3.35 5.29 -2.39 -0.01 3.34 16 16 C -0.13 -4.81 9.14 71.98 0.66 -4.15 16 17 C -0.52 -29.86 8.36 25.60 0.21 -29.65 16 18 H 0.03 2.13 7.61 -2.91 -0.02 2.11 16 19 C 0.02 0.98 5.47 84.66 0.46 1.44 16 20 N -0.94 -58.45 13.96 21.45 0.30 -58.15 16 21 Si 0.94 41.31 26.99 68.60 1.85 43.17 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.22 -8.50 6.82 99.48 0.68 -7.82 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.08 1.65 5.42 -2.39 -0.01 1.64 16 28 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 30 H 0.15 3.19 7.44 -2.91 -0.02 3.17 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.09 1.94 6.91 -2.39 -0.02 1.93 16 34 H 0.07 2.27 8.00 -2.39 -0.02 2.25 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -72.36 311.83 5.98 -66.37 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 1.04 Total: 16.22 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 4.80 Total: -13.34 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -1.59 Total: -72.32 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -0.11 Total: -40.11 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.85 Total: 43.17 kcal Total: -72.36 5.98 -66.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851546859.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.159 kcal (2) G-P(sol) polarization free energy of solvation -72.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds