Wall clock time and date at job start Mon Mar 30 2020 07:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31883 * 119.61860 * 2 1 4 4 C 1.31855 * 121.73077 * 180.02562 * 3 2 1 5 5 C 1.38237 * 120.76057 * 359.97438 * 4 3 2 6 6 C 1.38627 * 119.15551 * 359.72687 * 5 4 3 7 7 C 1.38177 * 119.61919 * 179.97438 * 2 1 3 8 8 C 1.50702 * 120.41469 * 359.97438 * 7 2 1 9 9 H 1.08997 * 109.47450 * 35.00454 * 8 7 2 10 10 C 1.53004 * 109.47315 * 274.99868 * 8 7 2 11 11 O 1.45203 * 109.47148 * 155.00400 * 8 7 2 12 12 C 1.34228 * 117.00192 * 210.00437 * 11 8 7 13 13 O 1.20826 * 119.99914 * 359.97438 * 12 11 8 14 14 C 1.50697 * 120.00400 * 179.97438 * 12 11 8 15 15 H 1.09001 * 109.46613 * 299.99660 * 14 12 11 16 16 C 1.53006 * 109.47239 * 59.99268 * 14 12 11 17 17 C 1.50698 * 109.47576 * 179.97438 * 14 12 11 18 18 H 1.08004 * 119.99528 * 359.97438 * 17 14 12 19 19 C 1.37876 * 120.00356 * 180.02562 * 17 14 12 20 20 N 1.31512 * 120.00020 * 179.97438 * 19 17 14 21 21 Si 1.86803 * 119.99603 * 359.97438 * 19 17 14 22 22 H 1.48495 * 109.47195 * 90.00782 * 21 19 17 23 23 H 1.48502 * 109.46875 * 210.00223 * 21 19 17 24 24 H 1.48493 * 109.47388 * 330.00132 * 21 19 17 25 25 H 1.09000 * 109.47241 * 270.02116 * 1 2 3 26 26 H 1.08999 * 109.46979 * 30.02258 * 1 2 3 27 27 H 1.08997 * 109.47306 * 150.01716 * 1 2 3 28 28 H 1.07998 * 119.62271 * 180.02562 * 4 3 2 29 29 H 1.07993 * 120.41943 * 180.02562 * 5 4 3 30 30 H 1.07998 * 120.78643 * 180.27220 * 6 5 4 31 31 H 1.08994 * 109.47402 * 180.02562 * 10 8 7 32 32 H 1.09002 * 109.46867 * 300.00688 * 10 8 7 33 33 H 1.08998 * 109.46655 * 60.00145 * 10 8 7 34 34 H 1.09001 * 109.47002 * 60.00070 * 16 14 12 35 35 H 1.08993 * 109.46955 * 180.02562 * 16 14 12 36 36 H 1.09000 * 109.47050 * 300.00336 * 16 14 12 37 37 H 0.97000 * 119.99684 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1951 -0.0005 5 6 4.2268 0.0341 -0.0005 6 6 3.5766 -1.1902 0.0058 7 6 2.1899 -1.2012 0.0005 8 6 1.4372 -2.5068 0.0017 9 1 0.5262 -2.4015 -0.5875 10 6 1.0741 -2.8849 1.4391 11 8 2.2701 -3.5462 -0.5764 12 6 1.6418 -4.5462 -1.2144 13 8 0.4357 -4.5529 -1.2871 14 6 2.4405 -5.6603 -1.8402 15 1 3.1113 -5.2476 -2.5937 16 6 3.2608 -6.3687 -0.7602 17 6 1.5040 -6.6478 -2.4875 18 1 0.4370 -6.4849 -2.4491 19 6 2.0092 -7.7595 -3.1276 20 7 1.1918 -8.6214 -3.6921 21 14 3.8547 -8.0413 -3.1932 22 1 4.2762 -8.8369 -2.0124 23 1 4.1989 -8.7788 -4.4354 24 1 4.5560 -6.7325 -3.1843 25 1 -0.3634 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5135 28 1 3.9753 2.1530 -0.0001 29 1 5.3057 0.0803 -0.0005 30 1 4.1367 -2.1136 0.0103 31 1 0.5300 -3.8294 1.4400 32 1 1.9851 -2.9901 2.0283 33 1 0.4488 -2.1046 1.8731 34 1 2.5901 -6.7813 -0.0066 35 1 3.8389 -7.1742 -1.2129 36 1 3.9382 -5.6547 -0.2917 37 1 1.5473 -9.4033 -4.1428 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851546861.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:50 Heat of formation + Delta-G solvation = -56.252316 kcal Electronic energy + Delta-G solvation = -19818.768724 eV Core-core repulsion = 16754.248718 eV Total energy + Delta-G solvation = -3064.520006 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.69337 -39.63696 -36.33478 -34.07299 -33.70845 -32.96227 -31.34997 -29.95952 -27.76054 -25.23129 -24.76846 -23.70373 -22.26245 -21.12782 -19.69764 -17.29296 -16.93350 -16.62957 -15.98024 -15.81947 -15.50524 -14.96862 -14.55278 -14.27809 -13.68787 -13.37484 -13.17706 -12.91917 -12.73935 -12.57078 -12.38280 -12.32546 -12.24649 -11.91701 -11.54822 -11.11876 -10.79836 -10.74744 -10.46318 -10.35338 -9.79230 -9.71868 -9.58958 -9.27749 -9.20828 -8.91476 -8.67915 -6.15646 -4.18512 0.95277 1.20529 3.08832 3.19338 3.20537 3.27896 3.31996 3.66107 4.17964 4.29599 4.52007 4.72708 4.83042 4.99157 5.12062 5.13944 5.16221 5.36649 5.43897 5.45988 5.51727 5.56299 5.80192 5.84557 5.98034 6.08896 6.10597 6.13505 6.17942 6.27755 6.40885 6.60029 6.66145 7.02489 7.08088 7.43929 7.85992 8.35828 8.66224 8.99557 9.41065 10.96641 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030608 B = 0.004957 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.573103 B = 5647.700737 C = 6104.212077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.136 3.864 3 N -0.486 5.486 4 C 0.098 3.902 5 C -0.181 4.181 6 C -0.048 4.048 7 C -0.133 4.133 8 C 0.124 3.876 9 H 0.098 0.902 10 C -0.161 4.161 11 O -0.362 6.362 12 C 0.474 3.526 13 O -0.500 6.500 14 C 0.026 3.974 15 H 0.063 0.937 16 C -0.145 4.145 17 C -0.519 4.519 18 H 0.095 0.905 19 C 0.076 3.924 20 N -0.890 5.890 21 Si 0.883 3.117 22 H -0.275 1.275 23 H -0.293 1.293 24 H -0.265 1.265 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.155 0.845 29 H 0.135 0.865 30 H 0.144 0.856 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.630 15.925 9.547 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.001 4.001 3 N -0.195 5.195 4 C -0.059 4.059 5 C -0.201 4.201 6 C -0.073 4.073 7 C -0.135 4.135 8 C 0.068 3.932 9 H 0.115 0.885 10 C -0.218 4.218 11 O -0.280 6.280 12 C 0.318 3.682 13 O -0.385 6.385 14 C 0.006 3.994 15 H 0.081 0.919 16 C -0.203 4.203 17 C -0.556 4.556 18 H 0.113 0.887 19 C -0.127 4.127 20 N -0.528 5.528 21 Si 0.712 3.288 22 H -0.202 1.202 23 H -0.220 1.220 24 H -0.190 1.190 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.172 0.828 29 H 0.153 0.847 30 H 0.162 0.838 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.733 16.550 9.430 19.627 hybrid contribution 1.506 -1.045 -0.089 1.835 sum 6.239 15.505 9.341 19.147 Atomic orbital electron populations 1.20865 0.88832 1.04009 1.03310 1.21018 0.96984 0.87415 0.94711 1.67552 1.10128 1.28663 1.13172 1.22727 0.89480 0.98465 0.95256 1.22149 1.01531 0.93331 1.03110 1.21546 0.93744 0.98908 0.93132 1.20545 0.94976 0.94770 1.03220 1.21242 0.93355 0.83263 0.95292 0.88462 1.22136 1.02336 1.02813 0.94555 1.86606 1.41835 1.33289 1.66304 1.24544 0.88421 0.81282 0.73995 1.90538 1.16203 1.75704 1.56018 1.19140 0.95712 0.90024 0.94501 0.91927 1.22093 0.99240 0.99792 0.99145 1.20907 0.95241 1.05016 1.34460 0.88724 1.24911 0.97697 0.95462 0.94629 1.69863 1.34725 1.12372 1.35798 0.86931 0.86239 0.78792 0.76822 1.20226 1.22050 1.18994 0.90092 0.90219 0.90113 0.82807 0.84699 0.83834 0.90991 0.91648 0.91045 0.92337 0.92991 0.93751 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.56 36.00 0.34 -0.87 16 2 C 0.14 1.77 6.78 -82.59 -0.56 1.21 16 3 N -0.49 -6.32 10.27 -9.47 -0.10 -6.42 16 4 C 0.10 1.06 11.18 -17.54 -0.20 0.86 16 5 C -0.18 -1.90 10.11 -39.44 -0.40 -2.30 16 6 C -0.05 -0.60 9.47 -39.28 -0.37 -0.97 16 7 C -0.13 -1.81 5.08 -104.48 -0.53 -2.34 16 8 C 0.12 1.88 2.29 -27.88 -0.06 1.81 16 9 H 0.10 1.56 5.19 -51.93 -0.27 1.29 16 10 C -0.16 -2.09 9.53 37.16 0.35 -1.74 16 11 O -0.36 -6.50 8.70 -39.25 -0.34 -6.85 16 12 C 0.47 10.36 7.22 36.00 0.26 10.62 16 13 O -0.50 -12.15 14.68 -18.75 -0.28 -12.43 16 14 C 0.03 0.60 2.33 -92.92 -0.22 0.38 16 15 H 0.06 1.43 7.20 -51.93 -0.37 1.05 16 16 C -0.15 -2.99 8.60 37.16 0.32 -2.67 16 17 C -0.52 -14.62 8.95 -34.44 -0.31 -14.93 16 18 H 0.09 3.01 7.00 -52.48 -0.37 2.64 16 19 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 20 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 21 Si 0.88 20.84 24.37 -169.99 -4.14 16.70 16 22 H -0.28 -6.27 6.87 56.52 0.39 -5.88 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.26 -5.86 6.53 56.52 0.37 -5.49 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.88 6.02 -51.93 -0.31 0.57 16 28 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 30 H 0.14 1.74 7.44 -52.49 -0.39 1.35 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.76 7.93 -51.93 -0.41 0.35 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 36 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 306.36 15.07 4.62 4.62 Total: -1.00 -32.04 306.36 -5.79 -37.83 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -4.86 Total: 1.53 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -1.47 Total: -8.88 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.68 Total: -32.51 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.62 Total: -19.27 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.14 Total: 16.70 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.04 -5.79 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851546861.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.425 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds