Wall clock time and date at job start Mon Mar 30 2020 07:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31883 * 119.61860 * 2 1 4 4 C 1.31855 * 121.73077 * 180.02562 * 3 2 1 5 5 C 1.38237 * 120.76057 * 359.97438 * 4 3 2 6 6 C 1.38627 * 119.15551 * 359.72687 * 5 4 3 7 7 C 1.38177 * 119.61919 * 179.97438 * 2 1 3 8 8 C 1.50702 * 120.41469 * 359.97438 * 7 2 1 9 9 H 1.08997 * 109.47450 * 35.00454 * 8 7 2 10 10 C 1.53004 * 109.47315 * 274.99868 * 8 7 2 11 11 O 1.45203 * 109.47148 * 155.00400 * 8 7 2 12 12 C 1.34228 * 117.00192 * 210.00437 * 11 8 7 13 13 O 1.20826 * 119.99914 * 359.97438 * 12 11 8 14 14 C 1.50697 * 120.00400 * 179.97438 * 12 11 8 15 15 H 1.09001 * 109.46613 * 299.99660 * 14 12 11 16 16 C 1.53006 * 109.47239 * 59.99268 * 14 12 11 17 17 C 1.50698 * 109.47576 * 179.97438 * 14 12 11 18 18 H 1.08004 * 119.99528 * 359.97438 * 17 14 12 19 19 C 1.37876 * 120.00356 * 180.02562 * 17 14 12 20 20 N 1.31512 * 120.00020 * 179.97438 * 19 17 14 21 21 Si 1.86803 * 119.99603 * 359.97438 * 19 17 14 22 22 H 1.48495 * 109.47195 * 90.00782 * 21 19 17 23 23 H 1.48502 * 109.46875 * 210.00223 * 21 19 17 24 24 H 1.48493 * 109.47388 * 330.00132 * 21 19 17 25 25 H 1.09000 * 109.47241 * 270.02116 * 1 2 3 26 26 H 1.08999 * 109.46979 * 30.02258 * 1 2 3 27 27 H 1.08997 * 109.47306 * 150.01716 * 1 2 3 28 28 H 1.07998 * 119.62271 * 180.02562 * 4 3 2 29 29 H 1.07993 * 120.41943 * 180.02562 * 5 4 3 30 30 H 1.07998 * 120.78643 * 180.27220 * 6 5 4 31 31 H 1.08994 * 109.47402 * 180.02562 * 10 8 7 32 32 H 1.09002 * 109.46867 * 300.00688 * 10 8 7 33 33 H 1.08998 * 109.46655 * 60.00145 * 10 8 7 34 34 H 1.09001 * 109.47002 * 60.00070 * 16 14 12 35 35 H 1.08993 * 109.46955 * 180.02562 * 16 14 12 36 36 H 1.09000 * 109.47050 * 300.00336 * 16 14 12 37 37 H 0.97000 * 119.99684 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1951 -0.0005 5 6 4.2268 0.0341 -0.0005 6 6 3.5766 -1.1902 0.0058 7 6 2.1899 -1.2012 0.0005 8 6 1.4372 -2.5068 0.0017 9 1 0.5262 -2.4015 -0.5875 10 6 1.0741 -2.8849 1.4391 11 8 2.2701 -3.5462 -0.5764 12 6 1.6418 -4.5462 -1.2144 13 8 0.4357 -4.5529 -1.2871 14 6 2.4405 -5.6603 -1.8402 15 1 3.1113 -5.2476 -2.5937 16 6 3.2608 -6.3687 -0.7602 17 6 1.5040 -6.6478 -2.4875 18 1 0.4370 -6.4849 -2.4491 19 6 2.0092 -7.7595 -3.1276 20 7 1.1918 -8.6214 -3.6921 21 14 3.8547 -8.0413 -3.1932 22 1 4.2762 -8.8369 -2.0124 23 1 4.1989 -8.7788 -4.4354 24 1 4.5560 -6.7325 -3.1843 25 1 -0.3634 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5135 28 1 3.9753 2.1530 -0.0001 29 1 5.3057 0.0803 -0.0005 30 1 4.1367 -2.1136 0.0103 31 1 0.5300 -3.8294 1.4400 32 1 1.9851 -2.9901 2.0283 33 1 0.4488 -2.1046 1.8731 34 1 2.5901 -6.7813 -0.0066 35 1 3.8389 -7.1742 -1.2129 36 1 3.9382 -5.6547 -0.2917 37 1 1.5473 -9.4033 -4.1428 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851546861.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:50 Heat of formation + Delta-G solvation = -76.444201 kcal Electronic energy + Delta-G solvation = -19819.644310 eV Core-core repulsion = 16754.248718 eV Total energy + Delta-G solvation = -3065.395592 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.87435 -41.00708 -37.86517 -35.97613 -34.86973 -33.90211 -33.33924 -31.00577 -28.63080 -27.19181 -26.08436 -25.07656 -23.33814 -22.29494 -21.28126 -19.05213 -18.36177 -18.03200 -17.34879 -17.03662 -16.95965 -16.48148 -15.79167 -15.52375 -15.01253 -14.72274 -14.46937 -14.27820 -14.06191 -13.91630 -13.57409 -13.44307 -13.28421 -13.17146 -12.94124 -12.82913 -12.59406 -12.25324 -11.89106 -11.84618 -11.51310 -11.29063 -11.11552 -10.78351 -10.71070 -10.45625 -9.81734 -8.32110 -6.42469 0.05559 0.29504 1.32033 1.38665 1.40006 1.50890 1.72595 2.31306 2.76523 3.01182 3.31615 3.50091 3.75902 3.86354 3.97222 4.04492 4.09357 4.28116 4.35809 4.51360 4.54477 4.60555 4.60586 4.67237 4.69641 4.75445 4.83627 4.96192 5.04330 5.15674 5.18996 5.25995 5.35245 5.42795 5.53042 5.74378 6.20791 6.69690 6.96074 6.97586 7.22588 8.84638 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030608 B = 0.004957 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.573103 B = 5647.700737 C = 6104.212077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.125 3.875 3 N -0.505 5.505 4 C 0.096 3.904 5 C -0.173 4.173 6 C -0.060 4.060 7 C -0.150 4.150 8 C 0.121 3.879 9 H 0.082 0.918 10 C -0.156 4.156 11 O -0.349 6.349 12 C 0.481 3.519 13 O -0.536 6.536 14 C 0.020 3.980 15 H 0.077 0.923 16 C -0.140 4.140 17 C -0.532 4.532 18 H 0.038 0.962 19 C 0.016 3.984 20 N -0.945 5.945 21 Si 0.953 3.047 22 H -0.256 1.256 23 H -0.296 1.296 24 H -0.233 1.233 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.187 0.813 29 H 0.169 0.831 30 H 0.147 0.853 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.999 17.699 10.818 22.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.012 4.012 3 N -0.215 5.215 4 C -0.061 4.061 5 C -0.192 4.192 6 C -0.086 4.086 7 C -0.152 4.152 8 C 0.066 3.934 9 H 0.100 0.900 10 C -0.213 4.213 11 O -0.267 6.267 12 C 0.325 3.675 13 O -0.425 6.425 14 C 0.000 4.000 15 H 0.095 0.905 16 C -0.197 4.197 17 C -0.570 4.570 18 H 0.056 0.944 19 C -0.182 4.182 20 N -0.584 5.584 21 Si 0.777 3.223 22 H -0.182 1.182 23 H -0.224 1.224 24 H -0.156 1.156 25 H 0.115 0.885 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.204 0.796 29 H 0.186 0.814 30 H 0.165 0.835 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.114 18.360 10.731 22.761 hybrid contribution 0.380 -1.456 -0.468 1.576 sum 8.493 16.904 10.263 21.522 Atomic orbital electron populations 1.20896 0.88032 1.03767 1.04299 1.21223 0.97798 0.87340 0.94803 1.67618 1.11437 1.28496 1.13975 1.23359 0.88921 1.00175 0.93614 1.22481 1.03177 0.92171 1.01358 1.21736 0.93312 1.00113 0.93419 1.20433 0.95637 0.93814 1.05346 1.21472 0.92757 0.83233 0.95923 0.89993 1.22119 1.03073 1.02626 0.93478 1.86532 1.41677 1.32917 1.65550 1.24230 0.87656 0.81772 0.73824 1.90533 1.17729 1.76666 1.57535 1.19074 0.95275 0.89839 0.95786 0.90525 1.22006 0.99264 1.00382 0.98001 1.21018 0.93727 1.06797 1.35463 0.94417 1.25909 1.03850 0.94699 0.93719 1.70039 1.37734 1.13354 1.37242 0.85798 0.78930 0.80277 0.77257 1.18163 1.22376 1.15648 0.88466 0.89757 0.91001 0.79582 0.81388 0.83539 0.92879 0.90439 0.88680 0.92931 0.93026 0.89637 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 9.56 71.24 0.68 -1.67 16 2 C 0.13 3.09 6.78 42.54 0.29 3.38 16 3 N -0.51 -12.08 10.27 -183.89 -1.89 -13.97 16 4 C 0.10 1.76 11.18 84.69 0.95 2.71 16 5 C -0.17 -2.98 10.11 22.36 0.23 -2.75 16 6 C -0.06 -1.35 9.47 22.47 0.21 -1.14 16 7 C -0.15 -3.87 5.08 -19.77 -0.10 -3.98 16 8 C 0.12 3.60 2.29 29.85 0.07 3.67 16 9 H 0.08 2.70 5.19 -2.39 -0.01 2.69 16 10 C -0.16 -3.90 9.53 71.98 0.69 -3.21 16 11 O -0.35 -12.20 8.70 -51.40 -0.45 -12.65 16 12 C 0.48 21.14 7.22 71.23 0.51 21.66 16 13 O -0.54 -27.28 14.68 21.97 0.32 -26.96 16 14 C 0.02 0.90 2.33 -12.29 -0.03 0.87 16 15 H 0.08 3.32 7.20 -2.39 -0.02 3.30 16 16 C -0.14 -5.35 8.60 71.98 0.62 -4.73 16 17 C -0.53 -31.01 8.95 25.60 0.23 -30.78 16 18 H 0.04 2.56 7.00 -2.91 -0.02 2.54 16 19 C 0.02 0.92 5.45 84.65 0.46 1.38 16 20 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 21 Si 0.95 41.94 24.37 68.60 1.67 43.61 16 22 H -0.26 -10.46 6.87 99.48 0.68 -9.78 16 23 H -0.30 -13.11 7.11 99.48 0.71 -12.41 16 24 H -0.23 -9.03 6.53 99.48 0.65 -8.38 16 25 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.07 1.61 6.02 -2.39 -0.01 1.59 16 28 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 30 H 0.15 3.13 7.44 -2.91 -0.02 3.11 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 1.90 7.93 -2.39 -0.02 1.88 16 34 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.05 1.99 3.27 -2.39 -0.01 1.98 16 36 H 0.08 2.58 8.11 -2.39 -0.02 2.56 16 37 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -72.89 306.36 5.76 -67.13 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.99 Total: 16.17 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 4.81 Total: -14.59 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -1.59 Total: -72.71 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.12 Total: -39.61 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.67 Total: 43.61 kcal Total: -72.89 5.76 -67.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851546861.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.311 kcal (2) G-P(sol) polarization free energy of solvation -72.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds