Wall clock time and date at job start Mon Mar 30 2020 07:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38114 * 119.99020 * 2 1 4 4 C 1.38823 * 119.98161 * 179.97438 * 3 2 1 5 5 N 1.40114 * 120.01339 * 179.97438 * 4 3 2 6 6 C 1.46501 * 119.99452 * 112.83265 * 5 4 3 7 7 C 1.34778 * 120.00276 * 292.83248 * 5 4 3 8 8 O 1.21298 * 119.99858 * 5.28194 * 7 5 4 9 9 C 1.50694 * 119.99869 * 185.27214 * 7 5 4 10 10 C 1.53004 * 109.47062 * 179.97438 * 9 7 5 11 11 C 1.50703 * 109.47248 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99609 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99859 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00133 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99635 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47020 * 90.00403 * 15 13 11 17 17 H 1.48498 * 109.46956 * 210.00146 * 15 13 11 18 18 H 1.48497 * 109.47040 * 330.00128 * 15 13 11 19 19 C 1.38868 * 119.97052 * 359.73036 * 4 3 2 20 20 C 1.38064 * 119.98827 * 0.54884 * 19 4 3 21 21 C 1.38702 * 119.99674 * 179.97438 * 2 1 3 22 22 O 1.35981 * 119.98106 * 359.97438 * 21 2 1 23 23 H 1.09011 * 109.46516 * 270.01591 * 1 2 3 24 24 H 1.08994 * 109.47720 * 30.01305 * 1 2 3 25 25 H 1.08998 * 109.47291 * 150.02034 * 1 2 3 26 26 H 1.07998 * 120.00654 * 359.96153 * 3 2 1 27 27 H 1.08996 * 109.47221 * 90.00768 * 6 5 4 28 28 H 1.09004 * 109.46826 * 209.99961 * 6 5 4 29 29 H 1.09000 * 109.47342 * 330.00018 * 6 5 4 30 30 H 1.08995 * 109.47428 * 300.00311 * 9 7 5 31 31 H 1.09003 * 109.46861 * 60.00633 * 9 7 5 32 32 H 1.08995 * 109.47271 * 300.00430 * 10 9 7 33 33 H 1.09003 * 109.46748 * 60.00586 * 10 9 7 34 34 H 0.97003 * 120.00174 * 179.97438 * 14 13 11 35 35 H 1.08004 * 120.00518 * 180.29085 * 19 4 3 36 36 H 1.07997 * 119.99706 * 179.72323 * 20 19 4 37 37 H 0.96701 * 113.99301 * 270.02609 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1962 0.0000 4 6 3.5856 1.1960 0.0005 5 7 4.2866 2.4092 0.0000 6 6 5.0789 2.7977 1.1694 7 6 4.2321 3.2186 -1.0763 8 8 3.5016 2.9443 -2.0050 9 6 5.0785 4.4644 -1.1258 10 6 4.8303 5.1975 -2.4456 11 6 5.6762 6.4437 -2.4949 12 1 6.3262 6.6881 -1.6677 13 6 5.6211 7.2712 -3.5964 14 7 4.8300 6.9733 -4.6037 15 14 6.6703 8.8155 -3.6577 16 1 7.9841 8.4973 -4.2724 17 1 5.9812 9.8501 -4.4702 18 1 6.8794 9.3269 -2.2793 19 6 4.2791 -0.0071 0.0067 20 6 3.5878 -1.2021 0.0009 21 6 2.2004 -1.2012 0.0005 22 8 1.5201 -2.3786 0.0016 23 1 -0.3633 0.0003 1.0278 24 1 -0.3634 0.8898 -0.5140 25 1 -0.3634 -0.8901 -0.5135 26 1 1.6573 2.1315 -0.0006 27 1 6.0956 2.4201 1.0613 28 1 5.1016 3.8847 1.2480 29 1 4.6290 2.3777 2.0690 30 1 4.8151 5.1159 -0.2927 31 1 6.1314 4.1913 -1.0548 32 1 5.0940 4.5457 -3.2785 33 1 3.7774 5.4705 -2.5171 34 1 4.7909 7.5557 -5.3785 35 1 5.3592 -0.0079 0.0119 36 1 4.1271 -2.1379 0.0012 37 1 1.3233 -2.7183 0.8854 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000913527326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:00 Heat of formation + Delta-G solvation = -59.790924 kcal Electronic energy + Delta-G solvation = -19210.669308 eV Core-core repulsion = 16145.995856 eV Total energy + Delta-G solvation = -3064.673452 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46303 -39.12025 -36.82622 -34.92439 -33.50802 -32.65433 -31.13554 -29.38499 -26.94215 -26.55472 -25.64497 -23.05167 -22.04689 -20.80883 -18.84122 -18.36619 -17.06128 -16.61369 -16.31397 -15.61880 -15.56830 -14.87024 -14.46586 -14.21543 -13.70502 -13.32243 -13.21117 -13.17451 -12.76064 -12.42373 -12.30284 -12.21694 -12.08087 -11.83658 -11.82024 -11.14636 -10.94024 -10.60740 -10.57106 -9.97714 -9.66730 -9.25434 -9.11023 -9.03752 -8.82593 -8.33627 -8.16935 -5.96902 -4.01696 1.09179 1.27094 3.10076 3.15395 3.32828 3.39027 3.41449 3.49652 4.09436 4.46227 4.73813 4.80152 5.06142 5.18852 5.29382 5.33404 5.38023 5.42270 5.47180 5.53226 5.63355 5.69196 5.82259 5.95690 6.10686 6.16782 6.17925 6.35978 6.46165 6.53592 6.80982 7.05813 7.51712 7.58374 7.72914 7.83649 8.05444 8.36199 8.66265 9.06471 9.61950 11.14038 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.038504 B = 0.003746 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.025480 B = 7473.370506 C = 7805.198267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.092 4.092 4 C 0.148 3.852 5 N -0.593 5.593 6 C 0.084 3.916 7 C 0.511 3.489 8 O -0.517 6.517 9 C -0.125 4.125 10 C 0.036 3.964 11 C -0.528 4.528 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.889 5.889 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.114 4.114 20 C -0.132 4.132 21 C 0.093 3.907 22 O -0.496 6.496 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.128 0.872 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.261 0.739 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.627 -15.518 15.837 22.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.111 4.111 4 C 0.058 3.942 5 N -0.325 5.325 6 C -0.058 4.058 7 C 0.303 3.697 8 O -0.390 6.390 9 C -0.165 4.165 10 C -0.002 4.002 11 C -0.566 4.566 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.528 5.528 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.134 4.134 20 C -0.151 4.151 21 C 0.048 3.952 22 O -0.305 6.305 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.146 0.854 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -4.036 -15.483 14.513 21.602 hybrid contribution 0.678 0.775 0.435 1.118 sum -3.359 -14.708 14.948 21.238 Atomic orbital electron populations 1.20689 0.90502 1.03493 1.02110 1.20086 0.96800 0.92042 1.01292 1.21099 0.93163 0.97765 0.99112 1.17659 0.90592 0.85789 1.00187 1.45827 1.50288 1.18741 1.17687 1.21819 0.95149 1.01985 0.86893 1.21824 0.82679 0.84898 0.80345 1.90705 1.39150 1.73181 1.35953 1.21909 0.98259 0.92083 1.04227 1.18928 0.97802 0.94087 0.89341 1.21197 1.24834 1.07393 1.03171 0.92563 1.25026 0.95577 0.98080 0.95680 1.69997 1.37788 1.37946 1.07025 0.86584 0.80374 0.82948 0.77999 1.20660 1.21216 1.19866 1.21084 1.00164 0.91069 1.01106 1.21192 0.93315 0.98305 1.02296 1.18245 0.89702 0.84717 1.02487 1.84842 1.76434 1.36119 1.33107 0.91389 0.91198 0.90818 0.85437 0.92469 0.89915 0.91407 0.90010 0.89983 0.95792 0.95795 0.92915 0.85409 0.85203 0.76015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.79 36.01 0.35 -0.80 16 2 C -0.10 -1.30 5.89 -104.50 -0.62 -1.92 16 3 C -0.09 -1.36 8.96 -39.41 -0.35 -1.71 16 4 C 0.15 2.23 4.83 -83.62 -0.40 1.83 16 5 N -0.59 -9.19 2.93 -120.78 -0.35 -9.54 16 6 C 0.08 0.91 10.10 59.85 0.60 1.51 16 7 C 0.51 10.25 7.55 -10.99 -0.08 10.17 16 8 O -0.52 -12.64 15.54 5.54 0.09 -12.56 16 9 C -0.13 -2.54 4.32 -27.88 -0.12 -2.66 16 10 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 11 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 12 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 15 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 19 C -0.11 -1.48 9.84 -39.41 -0.39 -1.87 16 20 C -0.13 -1.54 9.98 -39.46 -0.39 -1.94 16 21 C 0.09 1.12 6.68 -39.23 -0.26 0.86 16 22 O -0.50 -4.96 12.54 -19.68 -0.25 -5.21 16 23 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 24 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 25 H 0.07 0.74 7.53 -51.93 -0.39 0.35 16 26 H 0.13 1.95 8.06 -52.49 -0.42 1.52 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.86 6.48 -51.93 -0.34 0.52 16 29 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 30 H 0.08 1.49 7.24 -51.93 -0.38 1.11 16 31 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.38 1.87 9.06 45.56 0.41 2.28 16 LS Contribution 319.22 15.07 4.81 4.81 Total: -1.00 -35.76 319.22 -6.63 -42.38 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -4.45 Total: -0.40 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -2.19 Total: -9.32 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.38 Total: -36.30 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.16 Total: -17.76 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.76 -6.63 -42.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913527326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.406 kcal (2) G-P(sol) polarization free energy of solvation -35.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds