Wall clock time and date at job start Mon Mar 30 2020 07:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38114 * 119.99020 * 2 1 4 4 C 1.38823 * 119.98161 * 179.97438 * 3 2 1 5 5 N 1.40114 * 120.01339 * 179.97438 * 4 3 2 6 6 C 1.46501 * 119.99452 * 112.83265 * 5 4 3 7 7 C 1.34778 * 120.00276 * 292.83248 * 5 4 3 8 8 O 1.21298 * 119.99858 * 5.28194 * 7 5 4 9 9 C 1.50694 * 119.99869 * 185.27214 * 7 5 4 10 10 C 1.53004 * 109.47062 * 179.97438 * 9 7 5 11 11 C 1.50703 * 109.47248 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99609 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99859 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00133 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99635 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47020 * 90.00403 * 15 13 11 17 17 H 1.48498 * 109.46956 * 210.00146 * 15 13 11 18 18 H 1.48497 * 109.47040 * 330.00128 * 15 13 11 19 19 C 1.38868 * 119.97052 * 359.73036 * 4 3 2 20 20 C 1.38064 * 119.98827 * 0.54884 * 19 4 3 21 21 C 1.38702 * 119.99674 * 179.97438 * 2 1 3 22 22 O 1.35981 * 119.98106 * 359.97438 * 21 2 1 23 23 H 1.09011 * 109.46516 * 270.01591 * 1 2 3 24 24 H 1.08994 * 109.47720 * 30.01305 * 1 2 3 25 25 H 1.08998 * 109.47291 * 150.02034 * 1 2 3 26 26 H 1.07998 * 120.00654 * 359.96153 * 3 2 1 27 27 H 1.08996 * 109.47221 * 90.00768 * 6 5 4 28 28 H 1.09004 * 109.46826 * 209.99961 * 6 5 4 29 29 H 1.09000 * 109.47342 * 330.00018 * 6 5 4 30 30 H 1.08995 * 109.47428 * 300.00311 * 9 7 5 31 31 H 1.09003 * 109.46861 * 60.00633 * 9 7 5 32 32 H 1.08995 * 109.47271 * 300.00430 * 10 9 7 33 33 H 1.09003 * 109.46748 * 60.00586 * 10 9 7 34 34 H 0.97003 * 120.00174 * 179.97438 * 14 13 11 35 35 H 1.08004 * 120.00518 * 180.29085 * 19 4 3 36 36 H 1.07997 * 119.99706 * 179.72323 * 20 19 4 37 37 H 0.96701 * 113.99301 * 270.02609 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1962 0.0000 4 6 3.5856 1.1960 0.0005 5 7 4.2866 2.4092 0.0000 6 6 5.0789 2.7977 1.1694 7 6 4.2321 3.2186 -1.0763 8 8 3.5016 2.9443 -2.0050 9 6 5.0785 4.4644 -1.1258 10 6 4.8303 5.1975 -2.4456 11 6 5.6762 6.4437 -2.4949 12 1 6.3262 6.6881 -1.6677 13 6 5.6211 7.2712 -3.5964 14 7 4.8300 6.9733 -4.6037 15 14 6.6703 8.8155 -3.6577 16 1 7.9841 8.4973 -4.2724 17 1 5.9812 9.8501 -4.4702 18 1 6.8794 9.3269 -2.2793 19 6 4.2791 -0.0071 0.0067 20 6 3.5878 -1.2021 0.0009 21 6 2.2004 -1.2012 0.0005 22 8 1.5201 -2.3786 0.0016 23 1 -0.3633 0.0003 1.0278 24 1 -0.3634 0.8898 -0.5140 25 1 -0.3634 -0.8901 -0.5135 26 1 1.6573 2.1315 -0.0006 27 1 6.0956 2.4201 1.0613 28 1 5.1016 3.8847 1.2480 29 1 4.6290 2.3777 2.0690 30 1 4.8151 5.1159 -0.2927 31 1 6.1314 4.1913 -1.0548 32 1 5.0940 4.5457 -3.2785 33 1 3.7774 5.4705 -2.5171 34 1 4.7909 7.5557 -5.3785 35 1 5.3592 -0.0079 0.0119 36 1 4.1271 -2.1379 0.0012 37 1 1.3233 -2.7183 0.8854 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913527326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:00 Heat of formation + Delta-G solvation = -84.758581 kcal Electronic energy + Delta-G solvation = -19211.751987 eV Core-core repulsion = 16145.995856 eV Total energy + Delta-G solvation = -3065.756130 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.64533 -40.31300 -37.92558 -36.10922 -35.59775 -33.62875 -33.02426 -30.52347 -28.12245 -27.70484 -27.24151 -24.51306 -23.31797 -22.18928 -20.19894 -19.27856 -18.83759 -17.98606 -17.51196 -17.21608 -16.52514 -16.41852 -16.26158 -15.26093 -14.96683 -14.57164 -14.31346 -14.21005 -14.19052 -13.84826 -13.67539 -13.37909 -13.17704 -13.07420 -12.85499 -12.78712 -12.73548 -12.45603 -11.93649 -11.62049 -11.45345 -11.31870 -10.82383 -10.57410 -10.19559 -9.83235 -9.24775 -8.18262 -6.32803 0.09500 0.28011 1.42501 1.45475 1.56362 1.57639 1.93664 2.43176 2.52748 3.14904 3.26082 3.76766 3.87744 3.89008 4.16760 4.21667 4.38124 4.44548 4.46151 4.52563 4.69499 4.72793 4.77568 4.85728 4.86499 5.03868 5.06730 5.21900 5.39796 5.42427 5.48038 5.57682 5.60061 5.83333 5.96145 6.15789 6.24657 6.85334 6.86486 7.18863 7.37748 8.94582 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.038504 B = 0.003746 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.025480 B = 7473.370506 C = 7805.198267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.112 4.112 3 C -0.112 4.112 4 C 0.118 3.882 5 N -0.579 5.579 6 C 0.073 3.927 7 C 0.510 3.490 8 O -0.578 6.578 9 C -0.111 4.111 10 C 0.042 3.958 11 C -0.542 4.542 12 H 0.079 0.921 13 C -0.008 4.008 14 N -0.939 5.939 15 Si 0.975 3.025 16 H -0.272 1.272 17 H -0.287 1.287 18 H -0.253 1.253 19 C -0.114 4.114 20 C -0.130 4.130 21 C 0.100 3.900 22 O -0.500 6.500 23 H 0.091 0.909 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.107 0.893 32 H -0.020 1.020 33 H -0.019 1.019 34 H 0.263 0.737 35 H 0.145 0.855 36 H 0.158 0.842 37 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 -16.263 18.259 24.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.113 4.113 3 C -0.132 4.132 4 C 0.028 3.972 5 N -0.309 5.309 6 C -0.067 4.067 7 C 0.301 3.699 8 O -0.456 6.456 9 C -0.151 4.151 10 C 0.004 3.996 11 C -0.580 4.580 12 H 0.097 0.903 13 C -0.205 4.205 14 N -0.579 5.579 15 Si 0.799 3.201 16 H -0.197 1.197 17 H -0.213 1.213 18 H -0.177 1.177 19 C -0.134 4.134 20 C -0.149 4.149 21 C 0.055 3.945 22 O -0.313 6.313 23 H 0.110 0.890 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.127 0.873 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.127 0.873 31 H 0.125 0.875 32 H -0.002 1.002 33 H -0.001 1.001 34 H 0.071 0.929 35 H 0.163 0.837 36 H 0.176 0.824 37 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -2.421 -16.264 17.035 23.676 hybrid contribution 0.107 0.854 -0.259 0.899 sum -2.314 -15.410 16.775 22.896 Atomic orbital electron populations 1.20708 0.89067 1.03133 1.03549 1.20346 0.98039 0.91864 1.01092 1.21094 0.93509 0.97929 1.00694 1.17909 0.90865 0.86155 1.02302 1.45687 1.49689 1.18190 1.17369 1.22187 0.95843 1.02789 0.85872 1.21687 0.82049 0.85291 0.80868 1.90677 1.41681 1.74631 1.38587 1.21659 0.99867 0.92377 1.01154 1.18708 0.95073 0.94135 0.91665 1.21699 1.24874 1.07554 1.03843 0.90297 1.26164 0.96963 1.02240 0.95147 1.70187 1.39985 1.39727 1.07992 0.85297 0.78137 0.77722 0.78938 1.19714 1.21303 1.17663 1.21255 1.01046 0.90538 1.00546 1.21504 0.93344 0.98951 1.01059 1.18320 0.90053 0.84995 1.01118 1.84781 1.76120 1.35000 1.35373 0.89010 0.92317 0.90319 0.87322 0.90228 0.89255 0.89018 0.87308 0.87454 1.00175 1.00056 0.92875 0.83713 0.82434 0.73075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.17 9.79 71.24 0.70 -1.47 16 2 C -0.11 -2.84 5.89 -19.78 -0.12 -2.95 16 3 C -0.11 -3.41 8.96 22.38 0.20 -3.21 16 4 C 0.12 3.51 4.83 38.11 0.18 3.70 16 5 N -0.58 -17.63 2.93 -654.42 -1.92 -19.54 16 6 C 0.07 1.41 10.10 127.77 1.29 2.70 16 7 C 0.51 20.95 7.55 87.65 0.66 21.61 16 8 O -0.58 -30.06 15.54 -3.09 -0.05 -30.11 16 9 C -0.11 -4.52 4.32 29.85 0.13 -4.39 16 10 C 0.04 2.36 4.26 29.85 0.13 2.49 16 11 C -0.54 -30.87 9.11 25.60 0.23 -30.64 16 12 H 0.08 4.04 7.74 -2.91 -0.02 4.02 16 13 C -0.01 -0.46 5.46 84.66 0.46 0.01 16 14 N -0.94 -60.18 13.29 21.45 0.28 -59.90 16 15 Si 0.98 44.28 29.54 68.60 2.03 46.31 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 17 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 18 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 19 C -0.11 -2.76 9.84 22.38 0.22 -2.54 16 20 C -0.13 -2.72 9.98 22.35 0.22 -2.49 16 21 C 0.10 2.21 6.68 22.50 0.15 2.36 16 22 O -0.50 -8.62 12.54 -93.34 -1.17 -9.79 16 23 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.06 1.29 8.08 -2.39 -0.02 1.27 16 25 H 0.08 1.49 7.53 -2.39 -0.02 1.47 16 26 H 0.11 3.58 8.06 -2.91 -0.02 3.56 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.09 1.60 6.48 -2.39 -0.02 1.59 16 29 H 0.09 1.35 8.05 -2.39 -0.02 1.33 16 30 H 0.11 3.81 7.24 -2.39 -0.02 3.79 16 31 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 32 H -0.02 -1.30 8.10 -2.39 -0.02 -1.32 16 33 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 34 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 35 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.41 2.62 9.06 -74.06 -0.67 1.94 16 Total: -1.00 -82.21 319.22 4.04 -78.17 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.40 Total: 9.70 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 4.46 Total: -14.84 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -1.63 Total: -79.44 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -1.22 Total: -39.90 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -82.21 4.04 -78.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913527326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.590 kcal (2) G-P(sol) polarization free energy of solvation -82.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds