Wall clock time and date at job start Mon Mar 30 2020 07:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38363 * 119.45464 * 2 1 4 4 C 1.38342 * 119.31161 * 179.69495 * 3 2 1 5 5 C 1.40077 * 118.28048 * 0.54854 * 4 3 2 6 6 C 1.47717 * 120.56596 * 179.73508 * 5 4 3 7 7 O 1.21466 * 120.00214 * 173.77314 * 6 5 4 8 8 O 1.34710 * 119.99818 * 353.76647 * 6 5 4 9 9 C 1.45200 * 116.99928 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47052 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47189 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47161 * 179.97438 * 11 10 9 13 13 H 1.07992 * 120.00215 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00065 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99975 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00337 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47217 * 89.99459 * 16 14 12 18 18 H 1.48500 * 109.47045 * 209.99998 * 16 14 12 19 19 H 1.48503 * 109.46523 * 329.99635 * 16 14 12 20 20 C 1.39574 * 118.87125 * 359.45255 * 5 4 3 21 21 C 1.50701 * 119.71967 * 180.25941 * 20 5 4 22 22 N 1.31682 * 120.56159 * 0.27929 * 20 5 4 23 23 H 1.09000 * 109.47662 * 270.02006 * 1 2 3 24 24 H 1.09006 * 109.47468 * 30.02378 * 1 2 3 25 25 H 1.08999 * 109.47493 * 150.02225 * 1 2 3 26 26 H 1.07999 * 120.34404 * 359.97438 * 3 2 1 27 27 H 1.07992 * 120.86164 * 180.29503 * 4 3 2 28 28 H 1.08994 * 109.47668 * 300.00142 * 9 8 6 29 29 H 1.08999 * 109.47223 * 60.00588 * 9 8 6 30 30 H 1.09006 * 109.47144 * 299.99882 * 10 9 8 31 31 H 1.08999 * 109.46957 * 60.00021 * 10 9 8 32 32 H 1.08999 * 109.47447 * 300.00186 * 11 10 9 33 33 H 1.09006 * 109.47040 * 60.00333 * 11 10 9 34 34 H 0.96999 * 119.99957 * 180.02562 * 15 14 12 35 35 H 1.08995 * 109.47260 * 83.44382 * 21 20 5 36 36 H 1.09002 * 109.47106 * 203.43814 * 21 20 5 37 37 H 1.08993 * 109.47265 * 323.43558 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1873 1.2048 0.0000 4 6 3.5707 1.2013 0.0064 5 6 4.2314 -0.0338 0.0009 6 6 5.7072 -0.0964 0.0015 7 8 6.2697 -1.1674 0.1108 8 8 6.4293 1.0344 -0.1194 9 6 7.8748 0.8975 -0.1115 10 6 8.5186 2.2777 -0.2574 11 6 10.0418 2.1334 -0.2497 12 6 10.6759 3.4929 -0.3940 13 1 10.0548 4.3719 -0.4819 14 6 12.0491 3.6144 -0.4138 15 7 12.8057 2.5439 -0.3072 16 14 12.8353 5.2996 -0.5919 17 1 13.0508 5.8899 0.7535 18 1 14.1398 5.1661 -1.2887 19 1 11.9400 6.1823 -1.3821 20 6 3.4714 -1.2046 0.0009 21 6 4.1624 -2.5438 0.0009 22 7 2.1558 -1.1488 0.0005 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6440 2.1382 -0.0004 27 1 4.1270 2.1270 0.0114 28 1 8.1920 0.4465 0.8287 29 1 8.1841 0.2624 -0.9416 30 1 8.2015 2.7291 -1.1975 31 1 8.2093 2.9125 0.5730 32 1 10.3593 1.6819 0.6902 33 1 10.3508 1.4988 -1.0804 34 1 13.7718 2.6294 -0.3208 35 1 4.4332 -2.8129 1.0218 36 1 3.4911 -3.2990 -0.4078 37 1 5.0625 -2.4883 -0.6112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919541067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:38 Heat of formation + Delta-G solvation = -73.081671 kcal Electronic energy + Delta-G solvation = -18674.782496 eV Core-core repulsion = 15609.532715 eV Total energy + Delta-G solvation = -3065.249782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.03891 -39.66574 -36.60173 -34.07230 -33.83600 -33.18262 -31.68010 -29.32961 -28.05999 -26.80165 -23.76362 -23.01916 -22.36547 -21.03603 -20.35634 -17.85746 -17.08850 -16.50522 -16.36303 -16.00145 -15.62785 -15.05994 -14.48993 -14.29722 -14.07146 -13.51913 -13.35195 -13.22134 -12.61651 -12.56087 -12.29798 -12.20553 -12.14822 -12.00386 -11.86222 -10.99037 -10.67441 -10.65191 -10.42982 -10.30674 -10.11758 -9.82340 -9.75742 -9.50008 -9.18600 -9.14560 -8.40730 -6.05493 -4.08694 0.31662 0.93704 2.49212 2.75688 3.29586 3.35868 3.39184 3.47838 3.84912 4.35332 4.41149 4.46474 4.56460 4.75416 5.10608 5.17216 5.20359 5.28003 5.30524 5.52956 5.54482 5.56382 5.60810 5.63016 5.71811 5.89723 5.97507 6.03894 6.29990 6.50120 6.50427 6.79987 6.94789 7.57796 7.62167 7.68653 7.84387 7.92723 8.33535 8.97554 9.55734 11.05957 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040776 B = 0.003112 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.507799 B = 8994.121668 C = 9640.614719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.159 3.841 3 C -0.195 4.195 4 C -0.010 4.010 5 C -0.185 4.185 6 C 0.508 3.492 7 O -0.500 6.500 8 O -0.354 6.354 9 C 0.069 3.931 10 C -0.109 4.109 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.199 3.801 21 C -0.113 4.113 22 N -0.494 5.494 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.143 0.857 27 H 0.153 0.847 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.262 0.738 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.408 -4.945 0.676 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.022 3.978 3 C -0.215 4.215 4 C -0.036 4.036 5 C -0.189 4.189 6 C 0.352 3.648 7 O -0.391 6.391 8 O -0.270 6.270 9 C -0.003 4.003 10 C -0.147 4.147 11 C -0.013 4.013 12 C -0.560 4.560 13 H 0.076 0.924 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C 0.061 3.939 21 C -0.170 4.170 22 N -0.205 5.205 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.161 0.839 27 H 0.171 0.829 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -23.481 -6.065 0.703 24.261 hybrid contribution 1.168 1.690 -0.028 2.055 sum -22.312 -4.375 0.675 22.747 Atomic orbital electron populations 1.20803 0.88332 1.03884 1.03489 1.21609 0.97358 0.88322 0.90547 1.21952 0.94519 0.99579 1.05446 1.21996 0.94428 0.97998 0.89147 1.20051 0.91248 0.95465 1.12111 1.20795 0.87837 0.82638 0.73481 1.90783 1.72819 1.29823 1.45631 1.86528 1.23244 1.34555 1.82706 1.23554 0.72999 1.01444 1.02343 1.21775 0.98773 0.92251 1.01859 1.19052 0.86771 0.97762 0.97723 1.21164 0.91451 0.92961 1.50449 0.92437 1.25032 0.97443 0.96793 0.95199 1.69965 1.04792 1.28301 1.50284 0.86544 0.78733 0.84217 0.78228 1.20602 1.21170 1.19808 1.21526 0.88626 0.95207 0.88520 1.21106 1.00685 0.90771 1.04437 1.67547 1.08591 1.29021 1.15311 0.89871 0.90248 0.90121 0.83909 0.82943 0.91314 0.91305 0.92123 0.92131 0.96203 0.96186 0.92862 0.89591 0.90918 0.87921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.16 36.00 0.37 -0.29 16 2 C 0.16 1.55 6.78 -82.50 -0.56 0.99 16 3 C -0.20 -1.75 9.72 -39.50 -0.38 -2.13 16 4 C -0.01 -0.11 9.74 -38.85 -0.38 -0.49 16 5 C -0.19 -2.47 5.89 -104.84 -0.62 -3.08 16 6 C 0.51 7.97 7.83 34.60 0.27 8.25 16 7 O -0.50 -8.61 13.16 -19.24 -0.25 -8.86 16 8 O -0.35 -5.86 9.57 -40.52 -0.39 -6.25 16 9 C 0.07 1.26 5.48 37.16 0.20 1.46 16 10 C -0.11 -2.22 5.53 -26.73 -0.15 -2.37 16 11 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 12 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 16 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 C 0.20 2.57 6.82 -82.16 -0.56 2.01 16 21 C -0.11 -1.33 8.88 36.01 0.32 -1.01 16 22 N -0.49 -5.97 10.17 -5.41 -0.05 -6.02 16 23 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 27 H 0.15 1.49 7.72 -52.49 -0.41 1.08 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 1.34 5.85 -51.93 -0.30 1.03 16 LS Contribution 320.57 15.07 4.83 4.83 Total: -1.00 -31.56 320.57 -7.51 -39.07 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -5.32 Total: -3.60 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -2.04 Total: -9.60 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.68 Total: -32.02 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.64 Total: -15.11 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.56 -7.51 -39.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919541067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.013 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds