Wall clock time and date at job start Mon Mar 30 2020 07:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38363 * 119.45464 * 2 1 4 4 C 1.38342 * 119.31161 * 179.69495 * 3 2 1 5 5 C 1.40077 * 118.28048 * 0.54854 * 4 3 2 6 6 C 1.47717 * 120.56596 * 179.73508 * 5 4 3 7 7 O 1.21466 * 120.00214 * 173.77314 * 6 5 4 8 8 O 1.34710 * 119.99818 * 353.76647 * 6 5 4 9 9 C 1.45200 * 116.99928 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47052 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47189 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47161 * 179.97438 * 11 10 9 13 13 H 1.07992 * 120.00215 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00065 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99975 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00337 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47217 * 89.99459 * 16 14 12 18 18 H 1.48500 * 109.47045 * 209.99998 * 16 14 12 19 19 H 1.48503 * 109.46523 * 329.99635 * 16 14 12 20 20 C 1.39574 * 118.87125 * 359.45255 * 5 4 3 21 21 C 1.50701 * 119.71967 * 180.25941 * 20 5 4 22 22 N 1.31682 * 120.56159 * 0.27929 * 20 5 4 23 23 H 1.09000 * 109.47662 * 270.02006 * 1 2 3 24 24 H 1.09006 * 109.47468 * 30.02378 * 1 2 3 25 25 H 1.08999 * 109.47493 * 150.02225 * 1 2 3 26 26 H 1.07999 * 120.34404 * 359.97438 * 3 2 1 27 27 H 1.07992 * 120.86164 * 180.29503 * 4 3 2 28 28 H 1.08994 * 109.47668 * 300.00142 * 9 8 6 29 29 H 1.08999 * 109.47223 * 60.00588 * 9 8 6 30 30 H 1.09006 * 109.47144 * 299.99882 * 10 9 8 31 31 H 1.08999 * 109.46957 * 60.00021 * 10 9 8 32 32 H 1.08999 * 109.47447 * 300.00186 * 11 10 9 33 33 H 1.09006 * 109.47040 * 60.00333 * 11 10 9 34 34 H 0.96999 * 119.99957 * 180.02562 * 15 14 12 35 35 H 1.08995 * 109.47260 * 83.44382 * 21 20 5 36 36 H 1.09002 * 109.47106 * 203.43814 * 21 20 5 37 37 H 1.08993 * 109.47265 * 323.43558 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1873 1.2048 0.0000 4 6 3.5707 1.2013 0.0064 5 6 4.2314 -0.0338 0.0009 6 6 5.7072 -0.0964 0.0015 7 8 6.2697 -1.1674 0.1108 8 8 6.4293 1.0344 -0.1194 9 6 7.8748 0.8975 -0.1115 10 6 8.5186 2.2777 -0.2574 11 6 10.0418 2.1334 -0.2497 12 6 10.6759 3.4929 -0.3940 13 1 10.0548 4.3719 -0.4819 14 6 12.0491 3.6144 -0.4138 15 7 12.8057 2.5439 -0.3072 16 14 12.8353 5.2996 -0.5919 17 1 13.0508 5.8899 0.7535 18 1 14.1398 5.1661 -1.2887 19 1 11.9400 6.1823 -1.3821 20 6 3.4714 -1.2046 0.0009 21 6 4.1624 -2.5438 0.0009 22 7 2.1558 -1.1488 0.0005 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6440 2.1382 -0.0004 27 1 4.1270 2.1270 0.0114 28 1 8.1920 0.4465 0.8287 29 1 8.1841 0.2624 -0.9416 30 1 8.2015 2.7291 -1.1975 31 1 8.2093 2.9125 0.5730 32 1 10.3593 1.6819 0.6902 33 1 10.3508 1.4988 -1.0804 34 1 13.7718 2.6294 -0.3208 35 1 4.4332 -2.8129 1.0218 36 1 3.4911 -3.2990 -0.4078 37 1 5.0625 -2.4883 -0.6112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919541067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:38 Heat of formation + Delta-G solvation = -90.717734 kcal Electronic energy + Delta-G solvation = -18675.547253 eV Core-core repulsion = 15609.532715 eV Total energy + Delta-G solvation = -3066.014539 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.05926 -40.77445 -37.94288 -35.96767 -34.66204 -34.17303 -33.54061 -30.06122 -29.39941 -28.25711 -25.39551 -24.00633 -23.40370 -22.22116 -22.05941 -19.02708 -18.61713 -17.98468 -17.76392 -17.19451 -16.48838 -16.41451 -16.07544 -15.40512 -15.31755 -14.55801 -14.32049 -14.20993 -14.08911 -13.77629 -13.74308 -13.40613 -13.11440 -12.94645 -12.90363 -12.82365 -12.51051 -12.39051 -12.08823 -11.67826 -11.44126 -11.37081 -11.24734 -10.98568 -10.63598 -10.57673 -9.97357 -8.22217 -6.33787 -0.59863 0.11535 1.36954 1.41127 1.42958 1.49403 1.54895 2.41110 2.60013 3.07254 3.11853 3.45233 3.62883 3.69290 3.92436 3.99305 4.04334 4.25223 4.40297 4.48941 4.64122 4.65254 4.72856 4.78995 4.80675 4.83422 4.93052 5.02509 5.07996 5.14274 5.18712 5.39523 5.49426 5.60632 5.63304 5.79753 6.18449 6.58194 6.78869 6.82368 7.35872 8.90059 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040776 B = 0.003112 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.507799 B = 8994.121668 C = 9640.614719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.156 3.844 3 C -0.184 4.184 4 C -0.014 4.014 5 C -0.209 4.209 6 C 0.507 3.493 7 O -0.523 6.523 8 O -0.351 6.351 9 C 0.079 3.921 10 C -0.093 4.093 11 C 0.026 3.974 12 C -0.543 4.543 13 H 0.066 0.934 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.969 3.031 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.261 1.261 20 C 0.187 3.813 21 C -0.109 4.109 22 N -0.511 5.511 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.078 0.922 26 H 0.182 0.818 27 H 0.163 0.837 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.068 0.932 32 H -0.003 1.003 33 H -0.003 1.003 34 H 0.264 0.736 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.750 -3.003 0.600 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.019 3.981 3 C -0.203 4.203 4 C -0.039 4.039 5 C -0.212 4.212 6 C 0.353 3.647 7 O -0.414 6.414 8 O -0.268 6.268 9 C 0.006 3.994 10 C -0.131 4.131 11 C -0.012 4.012 12 C -0.581 4.581 13 H 0.084 0.916 14 C -0.200 4.200 15 N -0.574 5.574 16 Si 0.793 3.207 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.185 1.185 20 C 0.050 3.950 21 C -0.166 4.166 22 N -0.223 5.223 23 H 0.115 0.885 24 H 0.125 0.875 25 H 0.097 0.903 26 H 0.199 0.801 27 H 0.181 0.819 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.015 0.985 33 H 0.015 0.985 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -25.851 -4.121 0.627 26.185 hybrid contribution 1.757 1.050 0.002 2.046 sum -24.095 -3.071 0.629 24.298 Atomic orbital electron populations 1.20944 0.85487 1.05149 1.04700 1.22348 0.99222 0.87954 0.88602 1.22359 0.93643 1.00922 1.03358 1.22223 0.95575 0.97345 0.88736 1.19988 0.89447 0.96936 1.14846 1.21296 0.88836 0.81919 0.72644 1.90776 1.73439 1.30403 1.46809 1.86499 1.21986 1.35191 1.83074 1.23191 0.74302 0.99887 1.02037 1.21459 0.95405 0.93647 1.02546 1.18935 0.90310 0.96413 0.95500 1.21626 0.92148 0.94081 1.50214 0.91595 1.26017 0.98178 1.01077 0.94687 1.70102 1.05183 1.30856 1.51298 0.85389 0.77679 0.79059 0.78580 1.19718 1.20875 1.18476 1.21609 0.89234 0.95226 0.88981 1.21021 1.00254 0.91231 1.04071 1.67615 1.07983 1.30500 1.16161 0.88451 0.87548 0.90337 0.80057 0.81911 0.91689 0.91702 0.91397 0.91313 0.98470 0.98477 0.92681 0.89743 0.89636 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.16 71.23 0.72 -0.18 16 2 C 0.16 2.60 6.78 42.57 0.29 2.89 16 3 C -0.18 -2.67 9.72 22.32 0.22 -2.46 16 4 C -0.01 -0.27 9.74 22.74 0.22 -0.05 16 5 C -0.21 -5.47 5.89 -20.00 -0.12 -5.59 16 6 C 0.51 16.12 7.83 70.33 0.55 16.68 16 7 O -0.52 -18.62 13.16 19.95 0.26 -18.36 16 8 O -0.35 -11.57 9.57 -56.20 -0.54 -12.11 16 9 C 0.08 2.92 5.48 71.98 0.39 3.32 16 10 C -0.09 -3.80 5.53 30.59 0.17 -3.63 16 11 C 0.03 1.34 4.97 29.85 0.15 1.49 16 12 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 13 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 14 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 15 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 16 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 20 C 0.19 4.77 6.82 42.90 0.29 5.07 16 21 C -0.11 -2.63 8.88 71.24 0.63 -2.00 16 22 N -0.51 -11.68 10.17 -171.01 -1.74 -13.41 16 23 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.11 0.36 8.07 -2.38 -0.02 0.34 16 25 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 27 H 0.16 2.83 7.72 -2.91 -0.02 2.80 16 28 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 31 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 33 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 34 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.09 2.36 5.85 -2.39 -0.01 2.35 16 Total: -1.00 -68.77 320.57 5.57 -63.21 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.05 Total: 5.80 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 4.22 Total: -14.38 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -1.45 Total: -69.94 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.28 Total: -30.47 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -68.77 5.57 -63.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919541067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.511 kcal (2) G-P(sol) polarization free energy of solvation -68.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds