Wall clock time and date at job start Mon Mar 30 2020 06:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99815 * 2 1 4 4 H 1.48497 * 109.46791 * 240.00349 * 3 2 1 5 5 H 1.48498 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47025 * 120.00293 * 3 2 1 7 7 C 1.37877 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99620 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00328 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46935 * 59.99301 * 9 7 2 11 11 N 1.46895 * 109.46968 * 179.97438 * 9 7 2 12 12 C 1.46906 * 110.99620 * 204.99384 * 11 9 7 13 13 C 1.52999 * 109.46805 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.81315 * 55.53449 * 13 12 11 15 15 C 1.53025 * 109.64552 * 295.00372 * 13 12 11 16 16 C 1.50068 * 110.03748 * 190.81037 * 15 13 12 17 17 C 1.29446 * 124.07249 * 17.17672 * 16 15 13 18 18 C 1.50061 * 124.07943 * 359.55889 * 17 16 15 19 19 C 1.53022 * 110.14766 * 17.12126 * 18 17 16 20 20 C 1.53001 * 109.46852 * 299.99931 * 9 7 2 21 21 F 1.39905 * 109.46812 * 299.99732 * 20 9 7 22 22 F 1.39896 * 109.47246 * 59.99765 * 20 9 7 23 23 F 1.39900 * 109.47209 * 180.02562 * 20 9 7 24 24 H 0.96999 * 120.00399 * 359.97438 * 1 2 3 25 25 H 1.00901 * 110.99959 * 81.04926 * 11 9 7 26 26 H 1.09001 * 109.46536 * 60.00593 * 12 11 9 27 27 H 1.08993 * 109.47288 * 300.00246 * 12 11 9 28 28 H 1.09002 * 109.35872 * 70.67159 * 15 13 12 29 29 H 1.08998 * 109.35267 * 310.94872 * 15 13 12 30 30 H 1.08000 * 117.96155 * 197.19472 * 16 15 13 31 31 H 1.08004 * 117.95763 * 179.52818 * 17 16 15 32 32 H 1.08998 * 109.36503 * 137.33783 * 18 17 16 33 33 H 1.09003 * 109.35503 * 257.05974 * 18 17 16 34 34 H 1.09004 * 109.63779 * 70.25740 * 19 18 17 35 35 H 1.08997 * 109.64468 * 190.67240 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6247 -2.5563 -0.8919 11 7 2.2057 -3.6156 -0.0027 12 6 1.6030 -4.8230 -0.5833 13 6 2.6249 -5.9616 -0.5665 14 1 2.9893 -6.1160 0.4491 15 6 3.7973 -5.6143 -1.4865 16 6 4.6696 -6.8192 -1.6849 17 6 4.3001 -8.0326 -1.4264 18 6 2.9512 -8.4031 -0.8833 19 6 1.9676 -7.2478 -1.0816 20 6 0.3710 -2.5811 1.2472 21 9 1.1750 -2.5077 2.3898 22 9 -0.5381 -1.5177 1.2476 23 9 -0.3281 -3.7929 1.2465 24 1 -0.4851 0.8400 0.0004 25 1 2.5521 -3.7961 0.9277 26 1 1.3013 -4.6203 -1.6109 27 1 0.7296 -5.1105 0.0019 28 1 4.3843 -4.8133 -1.0371 29 1 3.4134 -5.2833 -2.4515 30 1 5.6679 -6.6643 -2.0669 31 1 5.0065 -8.8278 -1.6138 32 1 2.5816 -9.2859 -1.4049 33 1 3.0380 -8.6223 0.1809 34 1 1.7341 -7.1433 -2.1412 35 1 1.0529 -7.4452 -0.5227 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922648961.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:45 Heat of formation + Delta-G solvation = -138.871534 kcal Electronic energy + Delta-G solvation = -20900.260750 eV Core-core repulsion = 17290.301365 eV Total energy + Delta-G solvation = -3609.959385 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.49831 -46.17458 -45.65394 -38.63957 -35.57570 -32.93664 -31.17782 -30.53536 -27.63367 -24.52726 -24.12623 -22.69746 -20.89095 -20.63860 -17.76401 -17.26997 -16.72160 -16.71583 -16.16202 -15.52929 -14.76266 -14.29422 -14.19803 -13.65545 -13.31668 -13.04447 -12.92209 -12.60238 -12.54636 -12.45072 -12.22966 -12.15901 -11.95112 -11.86696 -11.70363 -11.32647 -11.00434 -10.77682 -10.55843 -10.43137 -10.25576 -10.00471 -9.85884 -9.46344 -8.84183 -8.53853 -7.58118 -6.10100 -4.27092 2.41741 3.28582 3.32598 3.35659 4.29411 4.43581 4.74273 4.89322 4.94212 5.01713 5.21420 5.43701 5.49108 5.56423 5.69492 5.73845 5.76787 5.81557 5.95909 6.04492 6.11893 6.16991 6.20917 6.30688 6.35805 6.52348 6.69041 6.80205 6.83555 7.10927 7.60661 7.80727 8.10759 8.17657 8.78779 9.37909 10.82383 Molecular weight = 263.12amu Principal moments of inertia in cm(-1) A = 0.026665 B = 0.005911 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.798538 B = 4736.143720 C = 5438.355880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.056 3.944 3 Si 0.911 3.089 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.078 0.922 9 C 0.192 3.808 10 H 0.070 0.930 11 N -0.669 5.669 12 C 0.049 3.951 13 C -0.082 4.082 14 H 0.067 0.933 15 C -0.079 4.079 16 C -0.145 4.145 17 C -0.172 4.172 18 C -0.087 4.087 19 C -0.115 4.115 20 C 0.394 3.606 21 F -0.209 7.209 22 F -0.137 7.137 23 F -0.233 7.233 24 H 0.264 0.736 25 H 0.334 0.666 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.841 -11.491 -1.607 12.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.151 4.151 3 Si 0.738 3.262 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.096 0.904 9 C 0.081 3.919 10 H 0.088 0.912 11 N -0.298 5.298 12 C -0.080 4.080 13 C -0.100 4.100 14 H 0.086 0.914 15 C -0.116 4.116 16 C -0.163 4.163 17 C -0.190 4.190 18 C -0.124 4.124 19 C -0.153 4.153 20 C 0.337 3.663 21 F -0.191 7.191 22 F -0.118 7.118 23 F -0.215 7.215 24 H 0.074 0.926 25 H 0.152 0.848 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.951 -11.164 -2.190 12.043 hybrid contribution -0.354 0.514 1.034 1.208 sum 3.597 -10.649 -1.155 11.299 Atomic orbital electron populations 1.70366 1.05833 1.26951 1.45715 1.25158 0.95114 1.00111 0.94681 0.86333 0.79310 0.81651 0.78865 1.19881 1.21215 1.20027 1.20799 0.94065 0.87617 1.52746 0.90420 1.20423 0.89757 0.91953 0.89789 0.91214 1.60645 1.37225 1.04862 1.27041 1.22255 0.95389 0.90016 1.00347 1.21178 0.95626 0.93890 0.99354 0.91435 1.20426 0.95592 0.95633 0.99942 1.22265 0.99498 0.94952 0.99582 1.21972 0.97755 0.96822 1.02468 1.20405 0.93216 0.98193 1.00602 1.21627 0.97817 0.94418 1.01481 1.24324 0.81211 0.72305 0.88474 1.92985 1.74345 1.96121 1.55626 1.93418 1.68586 1.53560 1.96252 1.92977 1.82108 1.49310 1.97076 0.92551 0.84843 0.91276 0.94446 0.89784 0.90840 0.88459 0.88690 0.91612 0.91319 0.91773 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.68 9.50 55.43 0.53 -23.16 16 2 C 0.06 1.48 5.20 -17.82 -0.09 1.39 16 3 Si 0.91 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.51 -13.60 8.58 -34.44 -0.30 -13.90 16 8 H 0.08 2.04 7.81 -52.49 -0.41 1.63 16 9 C 0.19 4.65 2.26 -68.87 -0.16 4.49 16 10 H 0.07 1.80 7.80 -51.93 -0.40 1.40 16 11 N -0.67 -13.55 5.89 -107.95 -0.64 -14.18 16 12 C 0.05 0.85 4.78 -3.82 -0.02 0.84 16 13 C -0.08 -1.17 2.38 -90.43 -0.22 -1.38 16 14 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 15 C -0.08 -1.10 5.21 -28.18 -0.15 -1.25 16 16 C -0.14 -1.78 9.80 -35.90 -0.35 -2.13 16 17 C -0.17 -1.96 9.80 -35.90 -0.35 -2.32 16 18 C -0.09 -0.95 6.11 -28.18 -0.17 -1.12 16 19 C -0.12 -1.42 5.30 -26.54 -0.14 -1.56 16 20 C 0.39 9.72 2.74 37.16 0.10 9.82 16 21 F -0.21 -5.12 16.31 2.25 0.04 -5.08 16 22 F -0.14 -3.75 12.91 2.25 0.03 -3.72 16 23 F -0.23 -5.30 15.04 2.25 0.03 -5.27 16 24 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 25 H 0.33 6.67 7.89 -39.29 -0.31 6.36 16 26 H 0.07 1.21 8.02 -51.93 -0.42 0.79 16 27 H 0.04 0.68 6.02 -51.93 -0.31 0.36 16 28 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 29 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 30 H 0.10 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.10 0.94 8.06 -52.48 -0.42 0.52 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 291.47 15.07 4.39 4.39 Total: -1.00 -27.10 291.47 -7.26 -34.36 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.78 Total: 3.92 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -1.84 Total: -7.12 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.11 Total: -37.34 kcal Atomic # 9 Polarization: -14.16 SS G_CDS: 0.10 Total: -14.06 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.10 -7.26 -34.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922648961.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.508 kcal (2) G-P(sol) polarization free energy of solvation -27.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds