Wall clock time and date at job start Mon Mar 30 2020 06:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99815 * 2 1 4 4 H 1.48497 * 109.46791 * 240.00349 * 3 2 1 5 5 H 1.48498 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47025 * 120.00293 * 3 2 1 7 7 C 1.37877 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99620 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00328 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46935 * 59.99301 * 9 7 2 11 11 N 1.46895 * 109.46968 * 179.97438 * 9 7 2 12 12 C 1.46906 * 110.99620 * 204.99384 * 11 9 7 13 13 C 1.52999 * 109.46805 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.81315 * 55.53449 * 13 12 11 15 15 C 1.53025 * 109.64552 * 295.00372 * 13 12 11 16 16 C 1.50068 * 110.03748 * 190.81037 * 15 13 12 17 17 C 1.29446 * 124.07249 * 17.17672 * 16 15 13 18 18 C 1.50061 * 124.07943 * 359.55889 * 17 16 15 19 19 C 1.53022 * 110.14766 * 17.12126 * 18 17 16 20 20 C 1.53001 * 109.46852 * 299.99931 * 9 7 2 21 21 F 1.39905 * 109.46812 * 299.99732 * 20 9 7 22 22 F 1.39896 * 109.47246 * 59.99765 * 20 9 7 23 23 F 1.39900 * 109.47209 * 180.02562 * 20 9 7 24 24 H 0.96999 * 120.00399 * 359.97438 * 1 2 3 25 25 H 1.00901 * 110.99959 * 81.04926 * 11 9 7 26 26 H 1.09001 * 109.46536 * 60.00593 * 12 11 9 27 27 H 1.08993 * 109.47288 * 300.00246 * 12 11 9 28 28 H 1.09002 * 109.35872 * 70.67159 * 15 13 12 29 29 H 1.08998 * 109.35267 * 310.94872 * 15 13 12 30 30 H 1.08000 * 117.96155 * 197.19472 * 16 15 13 31 31 H 1.08004 * 117.95763 * 179.52818 * 17 16 15 32 32 H 1.08998 * 109.36503 * 137.33783 * 18 17 16 33 33 H 1.09003 * 109.35503 * 257.05974 * 18 17 16 34 34 H 1.09004 * 109.63779 * 70.25740 * 19 18 17 35 35 H 1.08997 * 109.64468 * 190.67240 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6247 -2.5563 -0.8919 11 7 2.2057 -3.6156 -0.0027 12 6 1.6030 -4.8230 -0.5833 13 6 2.6249 -5.9616 -0.5665 14 1 2.9893 -6.1160 0.4491 15 6 3.7973 -5.6143 -1.4865 16 6 4.6696 -6.8192 -1.6849 17 6 4.3001 -8.0326 -1.4264 18 6 2.9512 -8.4031 -0.8833 19 6 1.9676 -7.2478 -1.0816 20 6 0.3710 -2.5811 1.2472 21 9 1.1750 -2.5077 2.3898 22 9 -0.5381 -1.5177 1.2476 23 9 -0.3281 -3.7929 1.2465 24 1 -0.4851 0.8400 0.0004 25 1 2.5521 -3.7961 0.9277 26 1 1.3013 -4.6203 -1.6109 27 1 0.7296 -5.1105 0.0019 28 1 4.3843 -4.8133 -1.0371 29 1 3.4134 -5.2833 -2.4515 30 1 5.6679 -6.6643 -2.0669 31 1 5.0065 -8.8278 -1.6138 32 1 2.5816 -9.2859 -1.4049 33 1 3.0380 -8.6223 0.1809 34 1 1.7341 -7.1433 -2.1412 35 1 1.0529 -7.4452 -0.5227 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922648961.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:45 Heat of formation + Delta-G solvation = -153.426414 kcal Electronic energy + Delta-G solvation = -20900.891897 eV Core-core repulsion = 17290.301365 eV Total energy + Delta-G solvation = -3610.590532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.49136 -48.13816 -47.72394 -39.74567 -37.20259 -34.75464 -32.57100 -31.54980 -29.31396 -26.47158 -25.58256 -23.78094 -22.76259 -21.86732 -19.24200 -18.92800 -18.72109 -18.53907 -17.83335 -16.78200 -16.62506 -15.74656 -15.56532 -15.13372 -14.95089 -14.69800 -14.54884 -14.41844 -14.23076 -14.11369 -13.95259 -13.83576 -13.52691 -13.14040 -13.01315 -12.83996 -12.62071 -12.51492 -12.38216 -12.04668 -11.57023 -11.53313 -11.14930 -10.91208 -10.57104 -9.77339 -9.27933 -8.13313 -6.36964 1.46259 1.47986 1.50516 1.56126 2.39272 2.44688 2.98412 3.25952 3.75168 3.80349 3.85322 3.91211 4.04218 4.18245 4.40054 4.46772 4.54384 4.63683 4.71258 4.84925 4.92670 4.93079 4.97377 5.08657 5.18233 5.30235 5.41272 5.55188 5.65551 5.80860 5.87180 6.16995 6.26290 6.50617 6.71854 7.31895 8.78512 Molecular weight = 263.12amu Principal moments of inertia in cm(-1) A = 0.026665 B = 0.005911 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.798538 B = 4736.143720 C = 5438.355880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.011 3.989 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.074 0.926 9 C 0.198 3.802 10 H 0.049 0.951 11 N -0.664 5.664 12 C 0.052 3.948 13 C -0.075 4.075 14 H 0.066 0.934 15 C -0.076 4.076 16 C -0.163 4.163 17 C -0.163 4.163 18 C -0.088 4.088 19 C -0.113 4.113 20 C 0.394 3.606 21 F -0.208 7.208 22 F -0.154 7.154 23 F -0.221 7.221 24 H 0.264 0.736 25 H 0.336 0.664 26 H 0.063 0.937 27 H 0.031 0.969 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.810 -12.613 -1.714 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.093 0.907 9 C 0.086 3.914 10 H 0.067 0.933 11 N -0.293 5.293 12 C -0.077 4.077 13 C -0.094 4.094 14 H 0.084 0.916 15 C -0.113 4.113 16 C -0.181 4.181 17 C -0.181 4.181 18 C -0.125 4.125 19 C -0.151 4.151 20 C 0.337 3.663 21 F -0.190 7.190 22 F -0.135 7.135 23 F -0.203 7.203 24 H 0.074 0.926 25 H 0.154 0.846 26 H 0.082 0.918 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.929 -12.309 -2.299 13.457 hybrid contribution -0.682 0.783 1.071 1.492 sum 4.247 -11.526 -1.228 12.345 Atomic orbital electron populations 1.70485 1.07055 1.27590 1.46438 1.25930 0.95880 1.03262 0.94221 0.85384 0.78145 0.77768 0.79036 1.19025 1.20879 1.19784 1.21057 0.94098 0.88795 1.52939 0.90744 1.20204 0.89737 0.92865 0.88637 0.93279 1.60608 1.36279 1.05258 1.27188 1.22309 0.96095 0.89797 0.99495 1.21117 0.95023 0.93666 0.99589 0.91554 1.20321 0.95523 0.96243 0.99168 1.22227 0.99894 0.94576 1.01355 1.22227 0.98208 0.96932 1.00758 1.20461 0.92521 0.98103 1.01374 1.21615 0.98318 0.93799 1.01413 1.24288 0.81067 0.72249 0.88685 1.92979 1.74276 1.96140 1.55557 1.93381 1.69156 1.54595 1.96349 1.92991 1.81891 1.48414 1.97052 0.92626 0.84566 0.91810 0.95096 0.91485 0.91749 0.87395 0.86627 0.89565 0.90600 0.91743 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.20 9.50 21.45 0.20 -49.00 16 2 C 0.01 0.56 5.20 84.65 0.44 1.00 16 3 Si 0.97 42.58 29.54 68.60 2.03 44.60 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.53 -28.21 8.58 25.60 0.22 -27.99 16 8 H 0.07 3.92 7.81 -2.91 -0.02 3.90 16 9 C 0.20 9.67 2.26 44.17 0.10 9.77 16 10 H 0.05 2.60 7.80 -2.39 -0.02 2.59 16 11 N -0.66 -27.02 5.89 -495.45 -2.92 -29.94 16 12 C 0.05 1.79 4.78 86.30 0.41 2.20 16 13 C -0.08 -2.08 2.38 -10.67 -0.03 -2.10 16 14 H 0.07 1.86 8.12 -2.39 -0.02 1.84 16 15 C -0.08 -2.06 5.21 29.66 0.15 -1.91 16 16 C -0.16 -3.71 9.80 27.03 0.27 -3.44 16 17 C -0.16 -3.26 9.80 27.03 0.26 -2.99 16 18 C -0.09 -1.65 6.11 29.66 0.18 -1.47 16 19 C -0.11 -2.58 5.30 30.72 0.16 -2.41 16 20 C 0.39 19.53 2.74 71.98 0.20 19.72 16 21 F -0.21 -10.13 16.31 44.97 0.73 -9.39 16 22 F -0.15 -8.48 12.91 44.97 0.58 -7.90 16 23 F -0.22 -10.03 15.04 44.97 0.68 -9.36 16 24 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 25 H 0.34 13.38 7.89 -89.69 -0.71 12.67 16 26 H 0.06 2.25 8.02 -2.39 -0.02 2.23 16 27 H 0.03 1.11 6.02 -2.39 -0.01 1.09 16 28 H 0.07 2.03 8.05 -2.39 -0.02 2.01 16 29 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 30 H 0.11 2.21 8.06 -2.91 -0.02 2.18 16 31 H 0.12 1.87 8.06 -2.91 -0.02 1.84 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.46 8.13 -2.38 -0.02 1.44 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -56.60 291.47 4.06 -52.54 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.39 Total: 18.06 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 2.37 Total: -9.62 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -2.72 Total: -78.93 kcal Atomic # 9 Polarization: -28.64 SS G_CDS: 1.99 Total: -26.65 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -56.60 4.06 -52.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922648961.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.887 kcal (2) G-P(sol) polarization free energy of solvation -56.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds