Wall clock time and date at job start Mon Mar 30 2020 06:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48499 * 109.47258 * 269.99944 * 3 2 1 5 5 H 1.48499 * 109.46889 * 29.99811 * 3 2 1 6 6 H 1.48498 * 109.47327 * 149.99739 * 3 2 1 7 7 C 1.37877 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00475 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99751 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.46921 * 299.99591 * 9 7 2 11 11 N 1.46903 * 109.47178 * 179.97438 * 9 7 2 12 12 C 1.46895 * 111.00133 * 154.99680 * 11 9 7 13 13 C 1.53001 * 109.47193 * 180.02562 * 12 11 9 14 14 H 1.08996 * 109.63851 * 305.41785 * 13 12 11 15 15 C 1.53175 * 109.58285 * 66.25967 * 13 12 11 16 16 C 1.50070 * 110.06164 * 169.34577 * 15 13 12 17 17 C 1.29452 * 124.07339 * 342.43433 * 16 15 13 18 18 C 1.50060 * 124.07388 * 0.72572 * 17 16 15 19 19 C 1.53020 * 110.15249 * 342.87128 * 18 17 16 20 20 C 1.53001 * 109.47560 * 59.99619 * 9 7 2 21 21 F 1.39902 * 109.47117 * 180.02562 * 20 9 7 22 22 F 1.39904 * 109.46757 * 300.00318 * 20 9 7 23 23 F 1.39902 * 109.47029 * 60.00006 * 20 9 7 24 24 H 0.97002 * 120.00365 * 0.02562 * 1 2 3 25 25 H 1.00893 * 110.99753 * 278.95386 * 11 9 7 26 26 H 1.09000 * 109.47503 * 59.99882 * 12 11 9 27 27 H 1.08998 * 109.47108 * 300.00184 * 12 11 9 28 28 H 1.09008 * 109.54198 * 49.07734 * 15 13 12 29 29 H 1.08999 * 109.26088 * 289.43669 * 15 13 12 30 30 H 1.08002 * 117.96604 * 162.72071 * 16 15 13 31 31 H 1.07994 * 117.95989 * 180.70886 * 17 16 15 32 32 H 1.09006 * 109.35518 * 103.07868 * 18 17 16 33 33 H 1.09004 * 109.36035 * 222.65984 * 18 17 16 34 34 H 1.09004 * 109.64792 * 169.11546 * 19 18 17 35 35 H 1.09002 * 109.64426 * 289.54189 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8904 11 7 2.2056 -3.6157 0.0005 12 6 1.6031 -4.8235 0.5802 13 6 2.6253 -5.9618 0.5635 14 1 3.0010 -6.1020 -0.4500 15 6 3.7822 -5.6268 1.5098 16 6 4.6547 -6.8324 1.7032 17 6 4.2907 -8.0432 1.4253 18 6 2.9511 -8.4087 0.8563 19 6 1.9632 -7.2566 1.0516 20 6 0.3718 -2.5805 -1.2490 21 9 -0.3281 -3.7919 -1.2486 22 9 -0.5373 -1.5171 -1.2494 23 9 1.1765 -2.5067 -2.3910 24 1 -0.4851 0.8400 -0.0004 25 1 2.5520 -3.7952 -0.9299 26 1 0.7295 -5.1106 -0.0051 27 1 1.3014 -4.6216 1.6079 28 1 3.3845 -5.3101 2.4741 29 1 4.3739 -4.8175 1.0819 30 1 5.6464 -6.6810 2.1033 31 1 4.9950 -8.8397 1.6144 32 1 3.0558 -8.6183 -0.2083 33 1 2.5741 -9.2977 1.3621 34 1 1.0594 -7.4467 0.4728 35 1 1.7097 -7.1664 2.1079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922648962.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:47 Heat of formation + Delta-G solvation = -138.940094 kcal Electronic energy + Delta-G solvation = -20897.121938 eV Core-core repulsion = 17287.159580 eV Total energy + Delta-G solvation = -3609.962358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.49919 -46.17800 -45.65292 -38.62518 -35.57728 -32.93835 -31.17806 -30.53289 -27.63719 -24.52880 -24.12195 -22.70080 -20.89586 -20.63868 -17.76286 -17.27171 -16.72409 -16.71616 -16.16041 -15.53308 -14.76062 -14.29259 -14.20022 -13.65220 -13.31543 -13.04328 -12.92292 -12.60495 -12.55170 -12.45322 -12.22933 -12.16246 -11.95546 -11.86884 -11.70479 -11.32653 -11.00052 -10.79665 -10.54529 -10.43339 -10.25817 -9.99699 -9.86129 -9.44870 -8.84288 -8.54788 -7.58027 -6.10418 -4.27244 2.41623 3.26776 3.33049 3.37126 4.29328 4.43341 4.73726 4.89391 4.94227 5.01543 5.21714 5.43499 5.48969 5.56333 5.69342 5.73405 5.76671 5.81394 5.95784 6.04637 6.11767 6.16776 6.20764 6.30687 6.35533 6.51948 6.68967 6.80048 6.83424 7.10809 7.60734 7.80548 8.10618 8.17659 8.79051 9.37822 10.82146 Molecular weight = 263.12amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.005904 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.739721 B = 4741.215128 C = 5444.069093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.055 3.945 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.514 4.514 8 H 0.078 0.922 9 C 0.192 3.808 10 H 0.070 0.930 11 N -0.669 5.669 12 C 0.049 3.951 13 C -0.081 4.081 14 H 0.068 0.932 15 C -0.079 4.079 16 C -0.145 4.145 17 C -0.172 4.172 18 C -0.087 4.087 19 C -0.115 4.115 20 C 0.394 3.606 21 F -0.232 7.232 22 F -0.137 7.137 23 F -0.209 7.209 24 H 0.263 0.737 25 H 0.334 0.666 26 H 0.037 0.963 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.847 -11.517 1.601 12.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.151 4.151 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.552 4.552 8 H 0.096 0.904 9 C 0.081 3.919 10 H 0.088 0.912 11 N -0.298 5.298 12 C -0.080 4.080 13 C -0.100 4.100 14 H 0.086 0.914 15 C -0.116 4.116 16 C -0.163 4.163 17 C -0.190 4.190 18 C -0.124 4.124 19 C -0.154 4.154 20 C 0.337 3.663 21 F -0.215 7.215 22 F -0.118 7.118 23 F -0.191 7.191 24 H 0.074 0.926 25 H 0.152 0.848 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.962 -11.192 2.189 12.073 hybrid contribution -0.370 0.519 -1.045 1.224 sum 3.592 -10.673 1.144 11.319 Atomic orbital electron populations 1.70374 1.05838 1.26840 1.45806 1.25159 0.95113 1.00125 0.94688 0.86279 0.79686 0.81997 0.78246 1.20503 1.21110 1.19486 1.20839 0.94099 0.87600 1.52618 0.90365 1.20434 0.89763 0.91967 0.89780 0.91197 1.60633 1.37246 1.04845 1.27062 1.22254 0.95386 0.90021 1.00354 1.21209 0.95691 0.93827 0.99292 0.91395 1.20451 0.95738 0.95675 0.99747 1.22264 0.99483 0.94953 0.99589 1.21972 0.97829 0.96840 1.02365 1.20400 0.93284 0.98199 1.00515 1.21636 0.97783 0.94400 1.01535 1.24328 0.81201 0.72309 0.88487 1.92978 1.82059 1.49352 1.97076 1.93419 1.68580 1.53577 1.96254 1.92984 1.74301 1.96116 1.55669 0.92610 0.84837 0.94447 0.91286 0.90835 0.89816 0.88458 0.88687 0.91319 0.91621 0.91843 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.68 9.50 55.43 0.53 -23.16 16 2 C 0.06 1.48 5.20 -17.82 -0.09 1.38 16 3 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.51 -13.58 8.58 -34.44 -0.30 -13.88 16 8 H 0.08 2.06 7.81 -52.49 -0.41 1.65 16 9 C 0.19 4.64 2.26 -68.86 -0.16 4.48 16 10 H 0.07 1.81 7.80 -51.93 -0.41 1.40 16 11 N -0.67 -13.55 5.94 -107.95 -0.64 -14.19 16 12 C 0.05 0.85 4.78 -3.83 -0.02 0.83 16 13 C -0.08 -1.16 2.39 -90.32 -0.22 -1.38 16 14 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 15 C -0.08 -1.11 5.23 -28.10 -0.15 -1.25 16 16 C -0.14 -1.78 9.80 -35.90 -0.35 -2.13 16 17 C -0.17 -1.96 9.80 -35.91 -0.35 -2.31 16 18 C -0.09 -0.95 6.12 -28.18 -0.17 -1.12 16 19 C -0.12 -1.42 5.30 -26.51 -0.14 -1.56 16 20 C 0.39 9.71 2.74 37.16 0.10 9.82 16 21 F -0.23 -5.30 15.04 2.25 0.03 -5.26 16 22 F -0.14 -3.75 12.91 2.25 0.03 -3.72 16 23 F -0.21 -5.11 16.31 2.25 0.04 -5.08 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.33 6.67 7.88 -39.30 -0.31 6.36 16 26 H 0.04 0.68 6.03 -51.93 -0.31 0.36 16 27 H 0.07 1.21 8.01 -51.93 -0.42 0.79 16 28 H 0.07 1.05 8.07 -51.92 -0.42 0.63 16 29 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 30 H 0.10 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 LS Contribution 291.54 15.07 4.39 4.39 Total: -1.00 -27.13 291.54 -7.27 -34.40 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -4.78 Total: 3.88 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.84 Total: -7.11 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.11 Total: -37.35 kcal Atomic # 9 Polarization: -14.16 SS G_CDS: 0.10 Total: -14.06 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.13 -7.27 -34.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922648962.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.539 kcal (2) G-P(sol) polarization free energy of solvation -27.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds