Wall clock time and date at job start Mon Mar 30 2020 06:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48499 * 109.47258 * 269.99944 * 3 2 1 5 5 H 1.48499 * 109.46889 * 29.99811 * 3 2 1 6 6 H 1.48498 * 109.47327 * 149.99739 * 3 2 1 7 7 C 1.37877 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00475 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99751 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.46921 * 299.99591 * 9 7 2 11 11 N 1.46903 * 109.47178 * 179.97438 * 9 7 2 12 12 C 1.46895 * 111.00133 * 154.99680 * 11 9 7 13 13 C 1.53001 * 109.47193 * 180.02562 * 12 11 9 14 14 H 1.08996 * 109.63851 * 305.41785 * 13 12 11 15 15 C 1.53175 * 109.58285 * 66.25967 * 13 12 11 16 16 C 1.50070 * 110.06164 * 169.34577 * 15 13 12 17 17 C 1.29452 * 124.07339 * 342.43433 * 16 15 13 18 18 C 1.50060 * 124.07388 * 0.72572 * 17 16 15 19 19 C 1.53020 * 110.15249 * 342.87128 * 18 17 16 20 20 C 1.53001 * 109.47560 * 59.99619 * 9 7 2 21 21 F 1.39902 * 109.47117 * 180.02562 * 20 9 7 22 22 F 1.39904 * 109.46757 * 300.00318 * 20 9 7 23 23 F 1.39902 * 109.47029 * 60.00006 * 20 9 7 24 24 H 0.97002 * 120.00365 * 0.02562 * 1 2 3 25 25 H 1.00893 * 110.99753 * 278.95386 * 11 9 7 26 26 H 1.09000 * 109.47503 * 59.99882 * 12 11 9 27 27 H 1.08998 * 109.47108 * 300.00184 * 12 11 9 28 28 H 1.09008 * 109.54198 * 49.07734 * 15 13 12 29 29 H 1.08999 * 109.26088 * 289.43669 * 15 13 12 30 30 H 1.08002 * 117.96604 * 162.72071 * 16 15 13 31 31 H 1.07994 * 117.95989 * 180.70886 * 17 16 15 32 32 H 1.09006 * 109.35518 * 103.07868 * 18 17 16 33 33 H 1.09004 * 109.36035 * 222.65984 * 18 17 16 34 34 H 1.09004 * 109.64792 * 169.11546 * 19 18 17 35 35 H 1.09002 * 109.64426 * 289.54189 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8904 11 7 2.2056 -3.6157 0.0005 12 6 1.6031 -4.8235 0.5802 13 6 2.6253 -5.9618 0.5635 14 1 3.0010 -6.1020 -0.4500 15 6 3.7822 -5.6268 1.5098 16 6 4.6547 -6.8324 1.7032 17 6 4.2907 -8.0432 1.4253 18 6 2.9511 -8.4087 0.8563 19 6 1.9632 -7.2566 1.0516 20 6 0.3718 -2.5805 -1.2490 21 9 -0.3281 -3.7919 -1.2486 22 9 -0.5373 -1.5171 -1.2494 23 9 1.1765 -2.5067 -2.3910 24 1 -0.4851 0.8400 -0.0004 25 1 2.5520 -3.7952 -0.9299 26 1 0.7295 -5.1106 -0.0051 27 1 1.3014 -4.6216 1.6079 28 1 3.3845 -5.3101 2.4741 29 1 4.3739 -4.8175 1.0819 30 1 5.6464 -6.6810 2.1033 31 1 4.9950 -8.8397 1.6144 32 1 3.0558 -8.6183 -0.2083 33 1 2.5741 -9.2977 1.3621 34 1 1.0594 -7.4467 0.4728 35 1 1.7097 -7.1664 2.1079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922648962.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:47 Heat of formation + Delta-G solvation = -153.542319 kcal Electronic energy + Delta-G solvation = -20897.755138 eV Core-core repulsion = 17287.159580 eV Total energy + Delta-G solvation = -3610.595558 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.49194 -48.14115 -47.72282 -39.73093 -37.20374 -34.75666 -32.57148 -31.54580 -29.31737 -26.47436 -25.57749 -23.78190 -22.76831 -21.86782 -19.24377 -18.92741 -18.72177 -18.54078 -17.83236 -16.78296 -16.62333 -15.74991 -15.56414 -15.13336 -14.95048 -14.69481 -14.55061 -14.42161 -14.23252 -14.11512 -13.95415 -13.83908 -13.52510 -13.14191 -13.01018 -12.84986 -12.64145 -12.50385 -12.37520 -12.05030 -11.56632 -11.51892 -11.14583 -10.91110 -10.58421 -9.77305 -9.27843 -8.13639 -6.37114 1.45546 1.46591 1.50509 1.58005 2.39131 2.44469 2.98207 3.25666 3.75144 3.80318 3.85372 3.91195 4.04227 4.18090 4.39617 4.47000 4.54378 4.63463 4.71092 4.84900 4.92312 4.93168 4.97374 5.08722 5.18053 5.30178 5.40965 5.55145 5.65629 5.80780 5.87133 6.16994 6.26168 6.50690 6.72056 7.31797 8.78447 Molecular weight = 263.12amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.005904 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.739721 B = 4741.215128 C = 5444.069093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.010 3.990 3 Si 0.972 3.028 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.531 4.531 8 H 0.074 0.926 9 C 0.197 3.803 10 H 0.050 0.950 11 N -0.664 5.664 12 C 0.052 3.948 13 C -0.075 4.075 14 H 0.066 0.934 15 C -0.076 4.076 16 C -0.162 4.162 17 C -0.163 4.163 18 C -0.088 4.088 19 C -0.113 4.113 20 C 0.394 3.606 21 F -0.221 7.221 22 F -0.154 7.154 23 F -0.207 7.207 24 H 0.264 0.736 25 H 0.336 0.664 26 H 0.031 0.969 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.810 -12.640 1.705 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.204 1.204 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.568 4.568 8 H 0.093 0.907 9 C 0.085 3.915 10 H 0.067 0.933 11 N -0.294 5.294 12 C -0.077 4.077 13 C -0.094 4.094 14 H 0.085 0.915 15 C -0.113 4.113 16 C -0.180 4.180 17 C -0.181 4.181 18 C -0.124 4.124 19 C -0.151 4.151 20 C 0.337 3.663 21 F -0.203 7.203 22 F -0.135 7.135 23 F -0.189 7.189 24 H 0.074 0.926 25 H 0.154 0.846 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.933 -12.339 2.295 13.485 hybrid contribution -0.696 0.789 -1.082 1.509 sum 4.237 -11.550 1.213 12.362 Atomic orbital electron populations 1.70490 1.07060 1.27527 1.46512 1.25929 0.95881 1.03270 0.94234 0.85328 0.78709 0.78116 0.78167 1.20407 1.20610 1.18726 1.21088 0.94098 0.88781 1.52816 0.90740 1.20213 0.89742 0.92872 0.88631 0.93256 1.60596 1.36303 1.05244 1.27213 1.22308 0.96091 0.89800 0.99504 1.21148 0.95090 0.93628 0.99507 0.91533 1.20348 0.95651 0.96268 0.99008 1.22226 0.99889 0.94574 1.01349 1.22226 0.98254 0.96951 1.00684 1.20456 0.92601 0.98126 1.01265 1.21624 0.98268 0.93754 1.01504 1.24291 0.81057 0.72251 0.88700 1.92991 1.81841 1.48455 1.97052 1.93382 1.69153 1.54614 1.96351 1.92978 1.74230 1.96135 1.55597 0.92632 0.84557 0.95096 0.91817 0.91692 0.91543 0.87392 0.86625 0.90601 0.89575 0.91475 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.20 9.50 21.45 0.20 -49.00 16 2 C 0.01 0.55 5.20 84.66 0.44 0.99 16 3 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 4 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 7 C -0.53 -28.16 8.58 25.60 0.22 -27.94 16 8 H 0.07 3.93 7.81 -2.91 -0.02 3.91 16 9 C 0.20 9.66 2.26 44.17 0.10 9.76 16 10 H 0.05 2.62 7.80 -2.38 -0.02 2.60 16 11 N -0.66 -27.03 5.94 -495.45 -2.94 -29.97 16 12 C 0.05 1.79 4.78 86.30 0.41 2.20 16 13 C -0.07 -2.07 2.39 -10.60 -0.03 -2.10 16 14 H 0.07 1.87 8.13 -2.39 -0.02 1.85 16 15 C -0.08 -2.07 5.23 29.71 0.16 -1.91 16 16 C -0.16 -3.70 9.80 27.03 0.26 -3.43 16 17 C -0.16 -3.25 9.80 27.03 0.26 -2.99 16 18 C -0.09 -1.65 6.12 29.65 0.18 -1.47 16 19 C -0.11 -2.58 5.30 30.73 0.16 -2.41 16 20 C 0.39 19.52 2.74 71.98 0.20 19.72 16 21 F -0.22 -10.03 15.04 44.97 0.68 -9.35 16 22 F -0.15 -8.50 12.91 44.97 0.58 -7.92 16 23 F -0.21 -10.11 16.31 44.97 0.73 -9.38 16 24 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 25 H 0.34 13.38 7.88 -89.70 -0.71 12.67 16 26 H 0.03 1.11 6.03 -2.39 -0.01 1.09 16 27 H 0.06 2.25 8.01 -2.39 -0.02 2.23 16 28 H 0.06 1.85 8.07 -2.38 -0.02 1.83 16 29 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 30 H 0.11 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.12 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.06 1.46 8.13 -2.39 -0.02 1.45 16 Total: -1.00 -56.66 291.54 4.04 -52.62 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.39 Total: 17.95 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 2.37 Total: -9.57 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -2.74 Total: -78.97 kcal Atomic # 9 Polarization: -28.64 SS G_CDS: 1.99 Total: -26.65 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -56.66 4.04 -52.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922648962.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.922 kcal (2) G-P(sol) polarization free energy of solvation -56.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds