Wall clock time and date at job start Mon Mar 30 2020 06:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99747 * 2 1 4 4 H 1.48499 * 109.47270 * 269.99667 * 3 2 1 5 5 H 1.48505 * 109.47171 * 29.99786 * 3 2 1 6 6 H 1.48504 * 109.47462 * 150.00044 * 3 2 1 7 7 C 1.37874 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00225 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00039 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46729 * 300.00214 * 9 7 2 11 11 N 1.46898 * 109.47371 * 179.97438 * 9 7 2 12 12 C 1.46896 * 110.99915 * 155.00062 * 11 9 7 13 13 C 1.53004 * 109.46908 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.64241 * 54.99937 * 13 12 11 15 15 C 1.53021 * 109.81414 * 294.46726 * 13 12 11 16 16 C 1.50070 * 110.14806 * 190.77626 * 15 13 12 17 17 C 1.29444 * 124.07244 * 17.13408 * 16 15 13 18 18 C 1.50059 * 124.07672 * 359.52988 * 17 16 15 19 19 C 1.53022 * 110.14941 * 17.13343 * 18 17 16 20 20 C 1.53002 * 109.46883 * 59.99850 * 9 7 2 21 21 F 1.39902 * 109.46721 * 180.02562 * 20 9 7 22 22 F 1.39901 * 109.47339 * 300.00176 * 20 9 7 23 23 F 1.39903 * 109.47010 * 60.00179 * 20 9 7 24 24 H 0.96998 * 120.00561 * 0.02562 * 1 2 3 25 25 H 1.00897 * 111.00116 * 278.95773 * 11 9 7 26 26 H 1.08999 * 109.47500 * 60.00241 * 12 11 9 27 27 H 1.08999 * 109.47182 * 299.99521 * 12 11 9 28 28 H 1.08995 * 109.36363 * 310.98587 * 15 13 12 29 29 H 1.09003 * 109.35624 * 70.57188 * 15 13 12 30 30 H 1.08000 * 117.96558 * 197.10971 * 16 15 13 31 31 H 1.08000 * 117.96235 * 179.50534 * 17 16 15 32 32 H 1.09007 * 109.36247 * 256.92389 * 18 17 16 33 33 H 1.09005 * 109.24862 * 137.26952 * 18 17 16 34 34 H 1.09007 * 109.64518 * 190.88479 * 19 18 17 35 35 H 1.08990 * 109.64616 * 70.24590 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 2.2058 -3.6157 0.0005 12 6 1.6031 -4.8235 0.5801 13 6 2.6254 -5.9618 0.5634 14 1 3.5353 -5.6446 1.0729 15 6 2.9519 -6.3447 -0.8817 16 6 3.7427 -7.6197 -0.9126 17 6 3.8219 -8.4481 0.0788 18 6 3.1422 -8.2444 1.4011 19 6 2.0402 -7.1909 1.2705 20 6 0.3720 -2.5805 -1.2490 21 9 -0.3279 -3.7919 -1.2487 22 9 -0.5372 -1.5172 -1.2496 23 9 1.1768 -2.5066 -2.3910 24 1 -0.4851 0.8400 -0.0004 25 1 2.5522 -3.7952 -0.9299 26 1 0.7297 -5.1106 -0.0053 27 1 1.3015 -4.6217 1.6079 28 1 2.0244 -6.4813 -1.4377 29 1 3.5338 -5.5473 -1.3441 30 1 4.2788 -7.8613 -1.8185 31 1 4.4137 -9.3418 -0.0540 32 1 3.8748 -7.9118 2.1365 33 1 2.7038 -9.1871 1.7288 34 1 1.6839 -6.9084 2.2612 35 1 1.2158 -7.5939 0.6824 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922648964.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:51 Heat of formation + Delta-G solvation = -138.844312 kcal Electronic energy + Delta-G solvation = -20988.498425 eV Core-core repulsion = 17378.540220 eV Total energy + Delta-G solvation = -3609.958204 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.119 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.50182 -46.17999 -45.65469 -38.70489 -35.57929 -32.95021 -31.19645 -30.58734 -27.61284 -24.61615 -24.22637 -22.71359 -20.85500 -20.58481 -17.82286 -17.27934 -16.74200 -16.69961 -16.24634 -15.61185 -14.75031 -14.34417 -14.10455 -13.61185 -13.37795 -13.09949 -13.01140 -12.68970 -12.59820 -12.42084 -12.27638 -12.19540 -11.99952 -11.88185 -11.73592 -11.23072 -10.99192 -10.81054 -10.60575 -10.37758 -10.31095 -10.03610 -9.83296 -9.45661 -8.90809 -8.54653 -7.59097 -6.10324 -4.27207 2.36233 3.26960 3.33155 3.37440 4.29563 4.43089 4.73213 4.85969 4.88451 5.01477 5.24187 5.36079 5.41045 5.53177 5.67770 5.71434 5.75795 5.80374 5.93603 5.97138 6.07102 6.15084 6.16848 6.25823 6.29150 6.44670 6.67973 6.74812 6.85396 7.02725 7.61051 7.80628 8.10867 8.18067 8.79159 9.37880 10.82270 Molecular weight = 263.12amu Principal moments of inertia in cm(-1) A = 0.029681 B = 0.005692 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.141807 B = 4918.010202 C = 5252.479024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.055 3.945 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.515 4.515 8 H 0.078 0.922 9 C 0.191 3.809 10 H 0.071 0.929 11 N -0.671 5.671 12 C 0.050 3.950 13 C -0.083 4.083 14 H 0.080 0.920 15 C -0.092 4.092 16 C -0.145 4.145 17 C -0.166 4.166 18 C -0.088 4.088 19 C -0.114 4.114 20 C 0.394 3.606 21 F -0.232 7.232 22 F -0.137 7.137 23 F -0.209 7.209 24 H 0.263 0.737 25 H 0.334 0.666 26 H 0.037 0.963 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.456 -12.017 0.512 12.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.151 4.151 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.552 4.552 8 H 0.096 0.904 9 C 0.080 3.920 10 H 0.088 0.912 11 N -0.300 5.300 12 C -0.080 4.080 13 C -0.102 4.102 14 H 0.098 0.902 15 C -0.129 4.129 16 C -0.163 4.163 17 C -0.184 4.184 18 C -0.125 4.125 19 C -0.153 4.153 20 C 0.337 3.663 21 F -0.214 7.214 22 F -0.118 7.118 23 F -0.191 7.191 24 H 0.074 0.926 25 H 0.153 0.847 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.569 -11.694 1.089 12.275 hybrid contribution -0.404 0.502 -1.178 1.342 sum 3.165 -11.192 -0.089 11.631 Atomic orbital electron populations 1.70375 1.05834 1.26852 1.45800 1.25160 0.95121 1.00130 0.94670 0.86273 0.79688 0.81961 0.78253 1.20492 1.21094 1.19479 1.20847 0.94113 0.87615 1.52647 0.90369 1.20441 0.89785 0.91974 0.89817 0.91166 1.60664 1.37289 1.04850 1.27229 1.22240 0.95468 0.89932 1.00329 1.21213 0.99513 0.93998 0.95465 0.90179 1.20561 0.99560 0.95325 0.97481 1.22101 0.99543 0.96282 0.98406 1.22004 1.01299 0.99311 0.95771 1.20423 0.97623 0.98994 0.95462 1.21624 0.97654 0.95227 1.00748 1.24319 0.81199 0.72322 0.88467 1.92978 1.82052 1.49333 1.97075 1.93418 1.68563 1.53576 1.96251 1.92983 1.74303 1.96118 1.55674 0.92601 0.84737 0.94451 0.91225 0.91069 0.90591 0.88355 0.88510 0.91039 0.91556 0.91547 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.75 9.50 55.43 0.53 -23.22 16 2 C 0.06 1.48 5.20 -17.82 -0.09 1.39 16 3 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.51 -13.72 8.58 -34.44 -0.30 -14.01 16 8 H 0.08 2.08 7.81 -52.48 -0.41 1.67 16 9 C 0.19 4.67 2.26 -68.86 -0.16 4.51 16 10 H 0.07 1.83 7.80 -51.93 -0.41 1.42 16 11 N -0.67 -13.83 6.23 -107.95 -0.67 -14.50 16 12 C 0.05 0.87 4.86 -3.82 -0.02 0.85 16 13 C -0.08 -1.19 2.44 -90.40 -0.22 -1.41 16 14 H 0.08 1.21 8.12 -51.93 -0.42 0.79 16 15 C -0.09 -1.27 4.97 -28.18 -0.14 -1.41 16 16 C -0.15 -1.76 9.80 -35.90 -0.35 -2.12 16 17 C -0.17 -1.86 9.80 -35.90 -0.35 -2.22 16 18 C -0.09 -0.94 6.11 -28.18 -0.17 -1.12 16 19 C -0.11 -1.40 5.31 -26.51 -0.14 -1.54 16 20 C 0.39 9.75 2.74 37.16 0.10 9.85 16 21 F -0.23 -5.30 15.04 2.25 0.03 -5.26 16 22 F -0.14 -3.75 12.91 2.25 0.03 -3.72 16 23 F -0.21 -5.12 16.31 2.25 0.04 -5.08 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.33 6.71 6.44 -39.29 -0.25 6.46 16 26 H 0.04 0.68 5.99 -51.93 -0.31 0.37 16 27 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16 28 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 29 H 0.08 1.08 7.21 -51.93 -0.37 0.71 16 30 H 0.10 1.07 8.06 -52.49 -0.42 0.64 16 31 H 0.10 0.94 8.06 -52.49 -0.42 0.51 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 LS Contribution 289.42 15.07 4.36 4.36 Total: -1.00 -27.45 289.42 -7.23 -34.68 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.68 Total: 4.05 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.84 Total: -7.22 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: -0.15 Total: -37.72 kcal Atomic # 9 Polarization: -14.17 SS G_CDS: 0.10 Total: -14.07 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.45 -7.23 -34.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922648964.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.163 kcal (2) G-P(sol) polarization free energy of solvation -27.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds