Wall clock time and date at job start Mon Mar 30 2020 06:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99747 * 2 1 4 4 H 1.48499 * 109.47270 * 269.99667 * 3 2 1 5 5 H 1.48505 * 109.47171 * 29.99786 * 3 2 1 6 6 H 1.48504 * 109.47462 * 150.00044 * 3 2 1 7 7 C 1.37874 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00225 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00039 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46729 * 300.00214 * 9 7 2 11 11 N 1.46898 * 109.47371 * 179.97438 * 9 7 2 12 12 C 1.46896 * 110.99915 * 155.00062 * 11 9 7 13 13 C 1.53004 * 109.46908 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.64241 * 54.99937 * 13 12 11 15 15 C 1.53021 * 109.81414 * 294.46726 * 13 12 11 16 16 C 1.50070 * 110.14806 * 190.77626 * 15 13 12 17 17 C 1.29444 * 124.07244 * 17.13408 * 16 15 13 18 18 C 1.50059 * 124.07672 * 359.52988 * 17 16 15 19 19 C 1.53022 * 110.14941 * 17.13343 * 18 17 16 20 20 C 1.53002 * 109.46883 * 59.99850 * 9 7 2 21 21 F 1.39902 * 109.46721 * 180.02562 * 20 9 7 22 22 F 1.39901 * 109.47339 * 300.00176 * 20 9 7 23 23 F 1.39903 * 109.47010 * 60.00179 * 20 9 7 24 24 H 0.96998 * 120.00561 * 0.02562 * 1 2 3 25 25 H 1.00897 * 111.00116 * 278.95773 * 11 9 7 26 26 H 1.08999 * 109.47500 * 60.00241 * 12 11 9 27 27 H 1.08999 * 109.47182 * 299.99521 * 12 11 9 28 28 H 1.08995 * 109.36363 * 310.98587 * 15 13 12 29 29 H 1.09003 * 109.35624 * 70.57188 * 15 13 12 30 30 H 1.08000 * 117.96558 * 197.10971 * 16 15 13 31 31 H 1.08000 * 117.96235 * 179.50534 * 17 16 15 32 32 H 1.09007 * 109.36247 * 256.92389 * 18 17 16 33 33 H 1.09005 * 109.24862 * 137.26952 * 18 17 16 34 34 H 1.09007 * 109.64518 * 190.88479 * 19 18 17 35 35 H 1.08990 * 109.64616 * 70.24590 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 2.2058 -3.6157 0.0005 12 6 1.6031 -4.8235 0.5801 13 6 2.6254 -5.9618 0.5634 14 1 3.5353 -5.6446 1.0729 15 6 2.9519 -6.3447 -0.8817 16 6 3.7427 -7.6197 -0.9126 17 6 3.8219 -8.4481 0.0788 18 6 3.1422 -8.2444 1.4011 19 6 2.0402 -7.1909 1.2705 20 6 0.3720 -2.5805 -1.2490 21 9 -0.3279 -3.7919 -1.2487 22 9 -0.5372 -1.5172 -1.2496 23 9 1.1768 -2.5066 -2.3910 24 1 -0.4851 0.8400 -0.0004 25 1 2.5522 -3.7952 -0.9299 26 1 0.7297 -5.1106 -0.0053 27 1 1.3015 -4.6217 1.6079 28 1 2.0244 -6.4813 -1.4377 29 1 3.5338 -5.5473 -1.3441 30 1 4.2788 -7.8613 -1.8185 31 1 4.4137 -9.3418 -0.0540 32 1 3.8748 -7.9118 2.1365 33 1 2.7038 -9.1871 1.7288 34 1 1.6839 -6.9084 2.2612 35 1 1.2158 -7.5939 0.6824 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922648964.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:51 Heat of formation + Delta-G solvation = -153.812900 kcal Electronic energy + Delta-G solvation = -20989.147511 eV Core-core repulsion = 17378.540220 eV Total energy + Delta-G solvation = -3610.607291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.50283 -48.15157 -47.73254 -39.80814 -37.20410 -34.77112 -32.58224 -31.60526 -29.29057 -26.49782 -25.73732 -23.82806 -22.71578 -21.80425 -19.26545 -18.96165 -18.73460 -18.54834 -17.92499 -16.85627 -16.63130 -15.82061 -15.33394 -15.26163 -14.95940 -14.63020 -14.56391 -14.49655 -14.34569 -14.04146 -14.00179 -13.88492 -13.73780 -13.16994 -12.95681 -12.88910 -12.64329 -12.47045 -12.37216 -12.01960 -11.64383 -11.51695 -11.13630 -10.93537 -10.58934 -9.81903 -9.31272 -8.14295 -6.38112 1.45463 1.46395 1.46807 1.58028 2.38859 2.43426 2.97378 3.25521 3.73815 3.78718 3.82570 3.87258 4.04872 4.17317 4.30594 4.44886 4.52196 4.60463 4.73277 4.79387 4.81510 4.92425 4.97804 5.10090 5.10830 5.21045 5.36140 5.53444 5.65348 5.79756 5.84325 6.11978 6.25150 6.49915 6.70942 7.30919 8.77860 Molecular weight = 263.12amu Principal moments of inertia in cm(-1) A = 0.029681 B = 0.005692 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.141807 B = 4918.010202 C = 5252.479024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.011 3.989 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.533 4.533 8 H 0.074 0.926 9 C 0.196 3.804 10 H 0.051 0.949 11 N -0.668 5.668 12 C 0.051 3.949 13 C -0.076 4.076 14 H 0.074 0.926 15 C -0.091 4.091 16 C -0.164 4.164 17 C -0.158 4.158 18 C -0.089 4.089 19 C -0.113 4.113 20 C 0.394 3.606 21 F -0.221 7.221 22 F -0.153 7.153 23 F -0.208 7.208 24 H 0.264 0.736 25 H 0.337 0.663 26 H 0.030 0.970 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.509 -13.024 0.848 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.193 4.193 3 Si 0.798 3.202 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.570 4.570 8 H 0.092 0.908 9 C 0.084 3.916 10 H 0.068 0.932 11 N -0.298 5.298 12 C -0.078 4.078 13 C -0.095 4.095 14 H 0.092 0.908 15 C -0.128 4.128 16 C -0.182 4.182 17 C -0.176 4.176 18 C -0.125 4.125 19 C -0.151 4.151 20 C 0.337 3.663 21 F -0.203 7.203 22 F -0.135 7.135 23 F -0.189 7.189 24 H 0.074 0.926 25 H 0.156 0.844 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.136 0.864 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.629 -12.724 1.428 13.615 hybrid contribution -0.753 0.743 -1.268 1.652 sum 3.876 -11.981 0.160 12.593 Atomic orbital electron populations 1.70489 1.07063 1.27577 1.46418 1.25936 0.95900 1.03295 0.94167 0.85313 0.78696 0.78028 0.78196 1.20372 1.20525 1.18733 1.21094 0.94095 0.88821 1.52985 0.90793 1.20228 0.89782 0.92867 0.88713 0.93173 1.60638 1.36404 1.05315 1.27470 1.22311 0.96175 0.89718 0.99566 1.21133 0.98264 0.93723 0.96344 0.90755 1.20494 0.99386 0.96233 0.96673 1.22096 1.00526 0.95874 0.99681 1.22271 1.00471 0.99465 0.95392 1.20478 0.97221 0.99309 0.95524 1.21617 0.98197 0.94590 1.00658 1.24271 0.81051 0.72267 0.88672 1.92992 1.81833 1.48446 1.97051 1.93381 1.69126 1.54597 1.96348 1.92977 1.74235 1.96137 1.55597 0.92587 0.84402 0.95194 0.91550 0.91972 0.91661 0.87185 0.86390 0.90303 0.89479 0.90946 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.28 9.50 21.45 0.20 -49.07 16 2 C 0.01 0.56 5.20 84.65 0.44 1.00 16 3 Si 0.97 42.68 29.54 68.60 2.03 44.71 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 7 C -0.53 -28.50 8.58 25.60 0.22 -28.28 16 8 H 0.07 3.94 7.81 -2.91 -0.02 3.92 16 9 C 0.20 9.69 2.26 44.17 0.10 9.79 16 10 H 0.05 2.68 7.80 -2.39 -0.02 2.66 16 11 N -0.67 -27.68 6.23 -495.44 -3.09 -30.77 16 12 C 0.05 1.79 4.86 86.31 0.42 2.21 16 13 C -0.08 -2.11 2.44 -10.65 -0.03 -2.14 16 14 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 15 C -0.09 -2.44 4.97 29.66 0.15 -2.29 16 16 C -0.16 -3.68 9.80 27.04 0.27 -3.41 16 17 C -0.16 -3.10 9.80 27.03 0.27 -2.84 16 18 C -0.09 -1.64 6.11 29.65 0.18 -1.46 16 19 C -0.11 -2.55 5.31 30.73 0.16 -2.39 16 20 C 0.39 19.67 2.74 71.98 0.20 19.87 16 21 F -0.22 -10.10 15.04 44.97 0.68 -9.42 16 22 F -0.15 -8.50 12.91 44.97 0.58 -7.92 16 23 F -0.21 -10.18 16.31 44.97 0.73 -9.44 16 24 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 25 H 0.34 13.59 6.44 -89.70 -0.58 13.01 16 26 H 0.03 1.09 5.99 -2.39 -0.01 1.08 16 27 H 0.07 2.34 8.06 -2.39 -0.02 2.32 16 28 H 0.06 1.75 8.08 -2.39 -0.02 1.73 16 29 H 0.06 1.85 7.21 -2.39 -0.02 1.84 16 30 H 0.11 2.18 8.06 -2.91 -0.02 2.16 16 31 H 0.12 1.85 8.06 -2.91 -0.02 1.82 16 32 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.06 1.40 8.12 -2.39 -0.02 1.38 16 Total: -1.00 -57.35 289.42 4.02 -53.33 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.52 Total: 18.53 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 2.37 Total: -9.94 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -2.88 Total: -79.84 kcal Atomic # 9 Polarization: -28.78 SS G_CDS: 1.99 Total: -26.79 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -57.35 4.02 -53.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922648964.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.487 kcal (2) G-P(sol) polarization free energy of solvation -57.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds