Wall clock time and date at job start Mon Mar 30 2020 06:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46763 * 2 1 4 4 C 1.46505 * 120.00069 * 270.00250 * 3 2 1 5 5 C 1.53003 * 109.46900 * 270.00067 * 4 3 2 6 6 C 1.38932 * 120.00084 * 90.00284 * 3 2 1 7 7 C 1.39518 * 119.84568 * 359.97438 * 6 3 2 8 8 C 1.36376 * 120.40977 * 179.97438 * 7 6 3 9 9 C 1.40198 * 120.08808 * 0.02562 * 8 7 6 10 10 C 1.46385 * 120.14873 * 179.97438 * 9 8 7 11 11 O 1.21357 * 120.00269 * 0.02562 * 10 9 8 12 12 C 1.40834 * 119.70018 * 359.97438 * 9 8 7 13 13 O 1.35471 * 120.20305 * 179.72515 * 12 9 8 14 14 C 1.34801 * 117.00313 * 174.68777 * 13 12 9 15 15 H 1.08003 * 119.99972 * 5.07140 * 14 13 12 16 16 C 1.38710 * 120.00440 * 185.07044 * 14 13 12 17 17 N 1.31510 * 119.99920 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00059 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47202 * 60.00219 * 18 16 14 20 20 H 1.48502 * 109.46846 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47134 * 299.99854 * 18 16 14 22 22 C 1.38453 * 119.59610 * 359.97438 * 12 9 8 23 23 H 1.08999 * 109.47080 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46812 * 299.99337 * 1 2 3 25 25 H 1.08994 * 109.47666 * 59.99894 * 1 2 3 26 26 H 1.08999 * 109.46812 * 240.00663 * 2 1 3 27 27 H 1.08994 * 109.47666 * 120.00106 * 2 1 3 28 28 H 1.08994 * 109.47088 * 29.99997 * 4 3 2 29 29 H 1.09007 * 109.47165 * 150.00320 * 4 3 2 30 30 H 1.08994 * 109.47193 * 299.99866 * 5 4 3 31 31 H 1.08991 * 109.46961 * 60.00504 * 5 4 3 32 32 H 1.09004 * 109.46738 * 179.97438 * 5 4 3 33 33 H 1.07999 * 119.79568 * 359.95810 * 7 6 3 34 34 H 1.07998 * 119.95422 * 180.02562 * 8 7 6 35 35 H 1.08008 * 119.99742 * 180.02562 * 10 9 8 36 36 H 0.96994 * 119.99889 * 180.02562 * 17 16 14 37 37 H 1.07992 * 120.05483 * 180.02562 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.7074 1.8315 -1.7105 6 6 2.2498 2.0362 1.2032 7 6 2.0158 1.3756 2.4096 8 6 2.2397 2.0073 3.5973 9 6 2.7075 3.3289 3.6132 10 6 2.9477 4.0084 4.8873 11 8 2.7425 3.4277 5.9329 12 6 2.9451 3.9996 2.3979 13 8 3.3918 5.2786 2.4014 14 6 3.7025 5.8216 1.2074 15 1 3.5140 5.2704 0.2980 16 6 4.2644 7.0884 1.1466 17 7 4.4945 7.7594 2.2540 18 14 4.6957 7.8405 -0.5080 19 1 3.4680 7.9527 -1.3359 20 1 5.2788 9.1905 -0.3012 21 1 5.6837 6.9762 -1.2023 22 6 2.7145 3.3458 1.1995 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.5816 1.6878 -2.0283 29 1 2.0954 3.1412 -1.1384 30 1 4.3882 2.2157 -0.9509 31 1 3.8743 0.7624 -1.8409 32 1 3.8888 2.3451 -2.6547 33 1 1.6549 0.3577 2.4028 34 1 2.0565 1.4888 4.5268 35 1 3.3077 5.0267 4.8967 36 1 4.8871 8.6454 2.2115 37 1 2.8946 3.8529 0.2632 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006869616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:37 Heat of formation + Delta-G solvation = -34.628686 kcal Electronic energy + Delta-G solvation = -19888.183372 eV Core-core repulsion = 16824.601037 eV Total energy + Delta-G solvation = -3063.582335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.66782 -38.00841 -37.58526 -35.36446 -32.47852 -32.28894 -30.60891 -29.04288 -27.94806 -25.47895 -23.92241 -23.64885 -21.41817 -21.06525 -19.51165 -18.12141 -17.52450 -15.92990 -15.59892 -15.41774 -14.90103 -14.47676 -14.14811 -13.92143 -13.75895 -13.61438 -13.27993 -12.96463 -12.86931 -12.57804 -12.45128 -12.05176 -11.89976 -11.69615 -11.46557 -11.42162 -11.14674 -10.99806 -10.85522 -10.62126 -10.37866 -9.68605 -9.29015 -8.90438 -8.69557 -7.53692 -6.86226 -6.58478 -4.18115 1.71400 2.41552 3.05493 3.07519 3.09988 3.32486 3.41595 3.85476 4.62293 4.89960 4.99858 5.03265 5.13038 5.17525 5.33842 5.45208 5.45949 5.49120 5.59483 5.68009 5.74137 5.85733 5.88946 6.01106 6.12248 6.18375 6.34073 6.42812 6.46933 6.56778 6.85581 6.92126 7.21003 7.26476 7.48412 7.67047 7.85644 7.96912 8.47507 8.86745 9.53047 10.58388 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.007855 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.898679 B = 3563.529605 C = 5334.383471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.120 3.880 3 N -0.623 5.623 4 C 0.117 3.883 5 C -0.172 4.172 6 C 0.283 3.717 7 C -0.285 4.285 8 C 0.026 3.974 9 C -0.319 4.319 10 C 0.396 3.604 11 O -0.516 6.516 12 C 0.231 3.769 13 O -0.161 6.161 14 C -0.394 4.394 15 H 0.094 0.906 16 C 0.044 3.956 17 N -0.854 5.854 18 Si 0.941 3.059 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.319 4.319 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.274 0.726 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.030 -10.889 -8.630 14.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.004 4.004 3 N -0.333 5.333 4 C -0.006 4.006 5 C -0.231 4.231 6 C 0.180 3.820 7 C -0.307 4.307 8 C 0.007 3.993 9 C -0.323 4.323 10 C 0.262 3.738 11 O -0.397 6.397 12 C 0.173 3.827 13 O -0.062 6.062 14 C -0.470 4.470 15 H 0.111 0.889 16 C -0.162 4.162 17 N -0.487 5.487 18 Si 0.765 3.235 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.194 1.194 22 C -0.343 4.343 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.016 -10.837 -8.004 14.058 hybrid contribution 0.209 0.383 -1.197 1.274 sum -3.806 -10.454 -9.200 14.437 Atomic orbital electron populations 1.22231 0.96679 1.01499 1.02630 1.21334 0.93800 0.82943 1.02298 1.46502 1.70678 1.12856 1.03289 1.21380 0.95996 0.98357 0.84870 1.22216 0.97765 1.01461 1.01624 1.17736 0.88728 0.90482 0.85062 1.19952 1.18641 1.01043 0.91060 1.20453 0.89727 0.92068 0.97021 1.19670 1.22190 0.97134 0.93319 1.23510 0.71710 0.92131 0.86469 1.90393 1.44063 1.69697 1.35526 1.19187 0.87457 0.84028 0.92031 1.83851 1.68959 1.19857 1.33513 1.21307 1.42434 1.00348 0.82916 0.88891 1.25320 0.95915 0.95561 0.99371 1.69989 1.39065 1.12559 1.27081 0.85783 0.79173 0.78531 0.80015 1.19390 1.20133 1.19375 1.20562 1.19539 0.95319 0.98901 0.92204 0.91962 0.92786 0.91422 0.90532 0.91451 0.90184 0.91656 0.92998 0.92023 0.87015 0.86109 0.88638 0.91626 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 10.24 37.16 0.38 -1.36 16 2 C 0.12 1.33 5.86 -4.04 -0.02 1.30 16 3 N -0.62 -8.83 2.59 -171.78 -0.44 -9.28 16 4 C 0.12 1.49 5.86 -4.04 -0.02 1.47 16 5 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 6 C 0.28 5.04 6.55 -83.90 -0.55 4.49 16 7 C -0.29 -4.96 9.12 -39.78 -0.36 -5.32 16 8 C 0.03 0.51 9.53 -39.52 -0.38 0.13 16 9 C -0.32 -7.00 5.89 -104.90 -0.62 -7.62 16 10 C 0.40 8.79 11.18 34.01 0.38 9.17 16 11 O -0.52 -12.02 17.15 5.49 0.09 -11.92 16 12 C 0.23 5.39 6.66 -38.52 -0.26 5.13 16 13 O -0.16 -4.30 8.94 0.98 0.01 -4.29 16 14 C -0.39 -10.29 9.49 30.91 0.29 -10.00 16 15 H 0.09 2.23 5.21 -52.48 -0.27 1.96 16 16 C 0.04 1.15 5.49 -17.51 -0.10 1.05 16 17 N -0.85 -23.64 13.67 55.48 0.76 -22.88 16 18 Si 0.94 19.33 29.55 -169.99 -5.02 14.31 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 C -0.32 -6.60 8.31 -39.24 -0.33 -6.92 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 27 H 0.08 0.85 6.16 -51.93 -0.32 0.53 16 28 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 29 H 0.08 1.13 6.17 -51.92 -0.32 0.81 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 1.65 6.09 -52.49 -0.32 1.33 16 34 H 0.12 2.18 7.63 -52.49 -0.40 1.78 16 35 H 0.10 2.14 7.63 -52.48 -0.40 1.74 16 36 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.13 2.73 3.68 -52.49 -0.19 2.53 16 LS Contribution 313.50 15.07 4.72 4.72 Total: -1.00 -29.57 313.50 -5.82 -35.39 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.74 Total: 4.14 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -1.20 Total: -10.19 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.31 Total: -32.16 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.10 Total: -16.22 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.57 -5.82 -35.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006869616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.763 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds