Wall clock time and date at job start Mon Mar 30 2020 06:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46763 * 2 1 4 4 C 1.46505 * 120.00069 * 270.00250 * 3 2 1 5 5 C 1.53003 * 109.46900 * 270.00067 * 4 3 2 6 6 C 1.38932 * 120.00084 * 90.00284 * 3 2 1 7 7 C 1.39518 * 119.84568 * 359.97438 * 6 3 2 8 8 C 1.36376 * 120.40977 * 179.97438 * 7 6 3 9 9 C 1.40198 * 120.08808 * 0.02562 * 8 7 6 10 10 C 1.46385 * 120.14873 * 179.97438 * 9 8 7 11 11 O 1.21357 * 120.00269 * 0.02562 * 10 9 8 12 12 C 1.40834 * 119.70018 * 359.97438 * 9 8 7 13 13 O 1.35471 * 120.20305 * 179.72515 * 12 9 8 14 14 C 1.34801 * 117.00313 * 174.68777 * 13 12 9 15 15 H 1.08003 * 119.99972 * 5.07140 * 14 13 12 16 16 C 1.38710 * 120.00440 * 185.07044 * 14 13 12 17 17 N 1.31510 * 119.99920 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00059 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47202 * 60.00219 * 18 16 14 20 20 H 1.48502 * 109.46846 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47134 * 299.99854 * 18 16 14 22 22 C 1.38453 * 119.59610 * 359.97438 * 12 9 8 23 23 H 1.08999 * 109.47080 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46812 * 299.99337 * 1 2 3 25 25 H 1.08994 * 109.47666 * 59.99894 * 1 2 3 26 26 H 1.08999 * 109.46812 * 240.00663 * 2 1 3 27 27 H 1.08994 * 109.47666 * 120.00106 * 2 1 3 28 28 H 1.08994 * 109.47088 * 29.99997 * 4 3 2 29 29 H 1.09007 * 109.47165 * 150.00320 * 4 3 2 30 30 H 1.08994 * 109.47193 * 299.99866 * 5 4 3 31 31 H 1.08991 * 109.46961 * 60.00504 * 5 4 3 32 32 H 1.09004 * 109.46738 * 179.97438 * 5 4 3 33 33 H 1.07999 * 119.79568 * 359.95810 * 7 6 3 34 34 H 1.07998 * 119.95422 * 180.02562 * 8 7 6 35 35 H 1.08008 * 119.99742 * 180.02562 * 10 9 8 36 36 H 0.96994 * 119.99889 * 180.02562 * 17 16 14 37 37 H 1.07992 * 120.05483 * 180.02562 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.7074 1.8315 -1.7105 6 6 2.2498 2.0362 1.2032 7 6 2.0158 1.3756 2.4096 8 6 2.2397 2.0073 3.5973 9 6 2.7075 3.3289 3.6132 10 6 2.9477 4.0084 4.8873 11 8 2.7425 3.4277 5.9329 12 6 2.9451 3.9996 2.3979 13 8 3.3918 5.2786 2.4014 14 6 3.7025 5.8216 1.2074 15 1 3.5140 5.2704 0.2980 16 6 4.2644 7.0884 1.1466 17 7 4.4945 7.7594 2.2540 18 14 4.6957 7.8405 -0.5080 19 1 3.4680 7.9527 -1.3359 20 1 5.2788 9.1905 -0.3012 21 1 5.6837 6.9762 -1.2023 22 6 2.7145 3.3458 1.1995 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.5816 1.6878 -2.0283 29 1 2.0954 3.1412 -1.1384 30 1 4.3882 2.2157 -0.9509 31 1 3.8743 0.7624 -1.8409 32 1 3.8888 2.3451 -2.6547 33 1 1.6549 0.3577 2.4028 34 1 2.0565 1.4888 4.5268 35 1 3.3077 5.0267 4.8967 36 1 4.8871 8.6454 2.2115 37 1 2.8946 3.8529 0.2632 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006869616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:36 Heat of formation + Delta-G solvation = -51.623370 kcal Electronic energy + Delta-G solvation = -19888.920317 eV Core-core repulsion = 16824.601037 eV Total energy + Delta-G solvation = -3064.319280 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26341 -39.51449 -39.36244 -36.85133 -34.32753 -33.30549 -32.00894 -30.63003 -29.22441 -27.35139 -25.36197 -24.72705 -22.87303 -22.57780 -20.99997 -19.85327 -19.05275 -17.39710 -17.15896 -16.93737 -16.33974 -16.06703 -15.78295 -15.43035 -15.19081 -15.01679 -14.72138 -14.39951 -14.25623 -14.04776 -13.68975 -13.44859 -13.15065 -12.94218 -12.79056 -12.70286 -12.55100 -12.26553 -12.14132 -11.84279 -11.80866 -11.36739 -10.89018 -10.56797 -10.48737 -9.23187 -8.48839 -8.24630 -6.17443 0.05354 0.80479 1.37454 1.48388 1.53273 1.71290 2.14760 2.18354 2.87561 3.21848 3.37001 3.74128 3.92879 4.02928 4.22211 4.26490 4.34438 4.44172 4.51354 4.54387 4.62308 4.70652 4.78644 4.88083 4.98603 5.00125 5.02442 5.08069 5.13961 5.32214 5.33767 5.42433 5.53505 5.66913 5.91448 5.99393 6.41631 6.56684 6.68445 6.95618 7.70045 8.72486 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.007855 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.898679 B = 3563.529605 C = 5334.383471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.111 3.889 3 N -0.614 5.614 4 C 0.110 3.890 5 C -0.166 4.166 6 C 0.295 3.705 7 C -0.267 4.267 8 C 0.025 3.975 9 C -0.342 4.342 10 C 0.399 3.601 11 O -0.531 6.531 12 C 0.211 3.789 13 O -0.206 6.206 14 C -0.414 4.414 15 H 0.105 0.895 16 C -0.013 4.013 17 N -0.910 5.910 18 Si 1.014 2.986 19 H -0.255 1.255 20 H -0.274 1.274 21 H -0.256 1.256 22 C -0.333 4.333 23 H 0.085 0.915 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.150 0.850 34 H 0.136 0.864 35 H 0.085 0.915 36 H 0.275 0.725 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.989 -13.849 -11.437 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.011 4.011 3 N -0.321 5.321 4 C -0.013 4.013 5 C -0.225 4.225 6 C 0.188 3.812 7 C -0.289 4.289 8 C 0.006 3.994 9 C -0.346 4.346 10 C 0.267 3.733 11 O -0.412 6.412 12 C 0.156 3.844 13 O -0.109 6.109 14 C -0.489 4.489 15 H 0.123 0.877 16 C -0.213 4.213 17 N -0.546 5.546 18 Si 0.833 3.167 19 H -0.179 1.179 20 H -0.199 1.199 21 H -0.181 1.181 22 C -0.357 4.357 23 H 0.103 0.897 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.115 0.885 27 H 0.100 0.900 28 H 0.120 0.880 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.167 0.833 34 H 0.154 0.846 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.005 -13.872 -10.856 18.312 hybrid contribution 0.376 0.965 -0.391 1.107 sum -4.629 -12.907 -11.247 17.735 Atomic orbital electron populations 1.22182 0.95626 1.02947 1.01766 1.21682 0.94547 0.80843 1.04034 1.46866 1.68737 1.14027 1.02492 1.21580 0.97331 0.97497 0.84853 1.22155 0.96326 1.02590 1.01388 1.17833 0.86870 0.89521 0.86996 1.20334 1.16269 1.02291 0.89965 1.20675 0.89205 0.90926 0.98596 1.19774 1.23919 0.98504 0.92451 1.23407 0.71312 0.91788 0.86796 1.90367 1.45138 1.69867 1.35873 1.19612 0.87573 0.83628 0.93587 1.83837 1.71268 1.21708 1.34105 1.21797 1.42762 1.00964 0.83408 0.87738 1.26551 0.95481 0.95742 1.03490 1.70137 1.41459 1.13229 1.29789 0.84711 0.79461 0.77514 0.75012 1.17946 1.19867 1.18053 1.20597 1.20566 0.96716 0.97831 0.89654 0.93894 0.92615 0.88536 0.90043 0.88020 0.92106 0.94775 0.91324 0.90324 0.83275 0.84642 0.89816 0.91590 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 10.24 71.98 0.74 -1.87 16 2 C 0.11 1.89 5.86 86.38 0.51 2.40 16 3 N -0.61 -15.26 2.59 -697.38 -1.80 -17.06 16 4 C 0.11 2.44 5.86 86.38 0.51 2.95 16 5 C -0.17 -3.53 10.24 71.98 0.74 -2.79 16 6 C 0.30 9.91 6.55 38.50 0.25 10.16 16 7 C -0.27 -8.53 9.12 22.14 0.20 -8.33 16 8 C 0.03 0.94 9.53 22.31 0.21 1.15 16 9 C -0.34 -15.40 5.89 -20.05 -0.12 -15.52 16 10 C 0.40 18.60 11.18 69.94 0.78 19.38 16 11 O -0.53 -25.30 17.15 -3.27 -0.06 -25.35 16 12 C 0.21 10.24 6.66 22.96 0.15 10.39 16 13 O -0.21 -11.66 8.94 -19.39 -0.17 -11.84 16 14 C -0.41 -22.57 9.49 67.93 0.64 -21.93 16 15 H 0.11 5.19 5.21 -2.91 -0.02 5.17 16 16 C -0.01 -0.71 5.49 84.85 0.47 -0.24 16 17 N -0.91 -53.11 13.67 21.62 0.30 -52.82 16 18 Si 1.01 40.25 29.55 68.60 2.03 42.27 16 19 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 21 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 22 C -0.33 -13.84 8.31 22.49 0.19 -13.65 16 23 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.10 1.21 8.07 -2.39 -0.02 1.19 16 27 H 0.08 1.36 6.16 -2.39 -0.01 1.35 16 28 H 0.10 1.62 8.07 -2.39 -0.02 1.61 16 29 H 0.06 1.62 6.17 -2.38 -0.01 1.60 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.15 3.67 6.09 -2.91 -0.02 3.66 16 34 H 0.14 4.65 7.63 -2.91 -0.02 4.62 16 35 H 0.09 4.09 7.63 -2.91 -0.02 4.06 16 36 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 37 H 0.13 5.43 3.68 -2.91 -0.01 5.42 16 Total: -1.00 -67.96 313.50 6.63 -61.33 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 1.08 Total: 21.37 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 5.27 Total: -17.90 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -1.51 Total: -69.88 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.23 Total: -37.19 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.27 kcal Total: -67.96 6.63 -61.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006869616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.707 kcal (2) G-P(sol) polarization free energy of solvation -67.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds