Wall clock time and date at job start Mon Mar 30 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47017 * 2 1 4 4 N 1.29392 * 120.00056 * 89.89132 * 3 2 1 5 5 O 1.41603 * 120.00139 * 5.33022 * 4 3 2 6 6 C 1.47532 * 119.99947 * 269.89266 * 3 2 1 7 7 C 1.39687 * 120.09168 * 180.02562 * 6 3 2 8 8 C 1.37791 * 119.90545 * 180.02562 * 7 6 3 9 9 C 1.38911 * 120.09155 * 0.02562 * 8 7 6 10 10 O 1.35812 * 119.90912 * 179.97438 * 9 8 7 11 11 C 1.42894 * 117.00236 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47302 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47519 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99823 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00000 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00012 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99746 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47159 * 89.99769 * 17 15 13 19 19 H 1.48490 * 109.46986 * 209.99460 * 17 15 13 20 20 H 1.48499 * 109.47095 * 329.99831 * 17 15 13 21 21 C 1.38924 * 120.18935 * 0.25826 * 9 8 7 22 22 C 1.37785 * 120.08956 * 359.44929 * 21 9 8 23 23 H 1.09001 * 109.46995 * 304.77257 * 1 2 3 24 24 H 1.09001 * 109.47237 * 64.77537 * 1 2 3 25 25 H 1.09000 * 109.46731 * 184.77574 * 1 2 3 26 26 H 1.09000 * 109.46975 * 239.99927 * 2 1 3 27 27 H 1.09000 * 109.47187 * 120.00049 * 2 1 3 28 28 H 0.96697 * 114.00013 * 179.97438 * 5 4 3 29 29 H 1.08003 * 120.05172 * 0.04051 * 7 6 3 30 30 H 1.07998 * 119.95566 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.46926 * 299.99508 * 11 10 9 32 32 H 1.08994 * 109.47483 * 59.99672 * 11 10 9 33 33 H 1.09001 * 109.46524 * 299.99504 * 12 11 10 34 34 H 1.08999 * 109.47342 * 59.98839 * 12 11 10 35 35 H 0.96999 * 120.00200 * 180.02562 * 16 15 13 36 36 H 1.07993 * 119.95408 * 179.69650 * 21 9 8 37 37 H 1.07997 * 120.04811 * 180.25005 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2460 2.0315 1.1206 5 8 2.1168 1.3312 2.3445 6 6 2.2805 2.1155 -1.2777 7 6 2.7466 3.4323 -1.2799 8 6 2.9766 4.0776 -2.4755 9 6 2.7450 3.4207 -3.6773 10 8 2.9724 4.0605 -4.8535 11 6 2.7130 3.3267 -6.0519 12 6 3.0255 4.2047 -7.2653 13 6 2.7526 3.4306 -8.5292 14 1 2.3926 2.4139 -8.4727 15 6 2.9634 4.0200 -9.7577 16 7 3.4022 5.2578 -9.8265 17 14 2.6257 3.0602 -11.3244 18 1 1.2166 3.2735 -11.7416 19 1 3.5366 3.5302 -12.3988 20 1 2.8555 1.6139 -11.0780 21 6 2.2758 2.1131 -3.6796 22 6 2.0490 1.4585 -2.4886 23 1 -0.3633 0.5861 0.8442 24 1 -0.3634 0.4380 -0.9297 25 1 -0.3633 -1.0241 0.0856 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.2962 1.8702 3.1269 29 1 2.9267 3.9439 -0.3459 30 1 3.3373 5.0956 -2.4781 31 1 3.3419 2.4367 -6.0763 32 1 1.6642 3.0312 -6.0772 33 1 2.3969 5.0948 -7.2412 34 1 4.0745 4.4999 -7.2398 35 1 3.5502 5.6726 -10.6908 36 1 2.0924 1.6077 -4.6162 37 1 1.6881 0.4406 -2.4912 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019489232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:32 Heat of formation + Delta-G solvation = -25.284909 kcal Electronic energy + Delta-G solvation = -18574.885238 eV Core-core repulsion = 15511.708080 eV Total energy + Delta-G solvation = -3063.177159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.97658 -38.24059 -36.73714 -34.61017 -33.38857 -31.62259 -31.02017 -30.17607 -28.92075 -25.33712 -24.31846 -22.90699 -22.46149 -20.66412 -19.68964 -18.05185 -17.05172 -16.51324 -16.05104 -15.47476 -15.43380 -15.04042 -14.71975 -14.44752 -14.10692 -13.83643 -13.33450 -13.00086 -12.83654 -12.64569 -12.39512 -12.24975 -11.88578 -11.64324 -11.39586 -11.20789 -10.96108 -10.77912 -10.56083 -10.17988 -9.90876 -9.71463 -9.67251 -9.34755 -8.99220 -8.48635 -7.81321 -6.13999 -4.19053 0.86459 1.42115 2.34793 2.93281 3.25083 3.31204 3.33685 3.71238 3.89225 4.27620 4.37728 4.75848 4.82468 5.00230 5.04537 5.12981 5.22625 5.32652 5.46447 5.51501 5.61875 5.67343 5.79278 5.93730 5.94726 5.95353 6.05732 6.28717 6.41147 6.43521 6.61278 6.70515 6.80396 7.44026 7.56563 7.58521 7.74004 7.95928 8.18751 8.86508 9.45649 10.97553 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.041747 B = 0.003132 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.545268 B = 8939.150423 C = 9505.441325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C 0.192 3.808 4 N -0.348 5.348 5 O -0.415 6.415 6 C -0.116 4.116 7 C -0.038 4.038 8 C -0.169 4.169 9 C 0.168 3.832 10 O -0.311 6.311 11 C 0.062 3.938 12 C 0.025 3.975 13 C -0.528 4.528 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.889 5.889 17 Si 0.899 3.101 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.218 4.218 22 C -0.044 4.044 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.400 0.600 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.264 0.736 36 H 0.137 0.863 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.524 -8.324 19.383 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C 0.004 3.996 4 N -0.091 5.091 5 O -0.322 6.322 6 C -0.118 4.118 7 C -0.058 4.058 8 C -0.188 4.188 9 C 0.120 3.880 10 O -0.223 6.223 11 C -0.012 4.012 12 C -0.012 4.012 13 C -0.566 4.566 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.527 5.527 17 Si 0.726 3.274 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.237 4.237 22 C -0.064 4.064 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.247 0.753 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.155 0.845 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.300 -7.644 19.299 21.019 hybrid contribution -0.347 -1.039 -0.619 1.258 sum -3.647 -8.683 18.680 20.920 Atomic orbital electron populations 1.21635 0.93595 1.02217 1.02504 1.21046 0.97319 0.93457 1.04066 1.23163 0.91687 0.93901 0.90835 1.76544 1.18556 1.22363 0.91631 1.88383 1.91960 1.38342 1.13485 1.17997 1.09311 0.94991 0.89489 1.21069 0.94176 0.92927 0.97620 1.20441 1.07252 1.01524 0.89545 1.19469 0.90718 0.90674 0.87184 1.86185 1.80549 1.42767 1.12781 1.23418 0.99472 0.96343 0.81924 1.19135 0.98493 0.95252 0.88342 1.20959 1.45799 0.99628 0.90227 0.92320 1.24989 0.94848 0.94987 0.99327 1.69968 1.44874 1.12554 1.25310 0.86482 0.78229 0.80107 0.82549 1.20473 1.21032 1.19733 1.21307 1.07694 0.95264 0.99389 1.20997 0.95663 0.99199 0.90560 0.92626 0.91959 0.91839 0.89870 0.89900 0.75293 0.84811 0.84769 0.92821 0.92819 0.95342 0.95331 0.92649 0.84480 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.90 37.16 0.37 -0.87 16 2 C -0.12 -1.17 5.38 -27.88 -0.15 -1.32 16 3 C 0.19 2.30 6.36 -79.83 -0.51 1.80 16 4 N -0.35 -4.32 11.23 35.08 0.39 -3.93 16 5 O -0.41 -4.35 13.70 -11.47 -0.16 -4.51 16 6 C -0.12 -1.47 5.87 -105.02 -0.62 -2.09 16 7 C -0.04 -0.50 9.57 -39.20 -0.38 -0.87 16 8 C -0.17 -2.43 9.97 -39.50 -0.39 -2.82 16 9 C 0.17 2.75 6.69 -39.08 -0.26 2.49 16 10 O -0.31 -6.07 10.13 -19.15 -0.19 -6.26 16 11 C 0.06 1.27 4.67 37.16 0.17 1.44 16 12 C 0.02 0.63 5.34 -27.88 -0.15 0.49 16 13 C -0.53 -14.38 9.11 -34.44 -0.31 -14.69 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 17 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 21 C -0.22 -3.11 9.02 -39.49 -0.36 -3.47 16 22 C -0.04 -0.54 9.35 -39.20 -0.37 -0.90 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.69 6.47 -51.93 -0.34 0.36 16 27 H 0.08 0.84 7.27 -51.93 -0.38 0.46 16 28 H 0.40 2.35 9.28 45.56 0.42 2.77 16 29 H 0.13 1.58 7.55 -52.48 -0.40 1.18 16 30 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 31 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 32 H 0.05 1.03 7.64 -51.93 -0.40 0.63 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.14 1.88 6.27 -52.49 -0.33 1.55 16 37 H 0.13 1.22 6.35 -52.49 -0.33 0.89 16 LS Contribution 319.21 15.07 4.81 4.81 Total: -1.00 -30.98 319.21 -6.70 -37.68 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.22 Total: 0.90 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -3.05 Total: -19.22 kcal Atomic # 7 Polarization: -30.41 SS G_CDS: 1.13 Total: -29.28 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.35 Total: -10.77 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.98 -6.70 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019489232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.394 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds