Wall clock time and date at job start Mon Mar 30 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47017 * 2 1 4 4 N 1.29392 * 120.00056 * 89.89132 * 3 2 1 5 5 O 1.41603 * 120.00139 * 5.33022 * 4 3 2 6 6 C 1.47532 * 119.99947 * 269.89266 * 3 2 1 7 7 C 1.39687 * 120.09168 * 180.02562 * 6 3 2 8 8 C 1.37791 * 119.90545 * 180.02562 * 7 6 3 9 9 C 1.38911 * 120.09155 * 0.02562 * 8 7 6 10 10 O 1.35812 * 119.90912 * 179.97438 * 9 8 7 11 11 C 1.42894 * 117.00236 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47302 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47519 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99823 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00000 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00012 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99746 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47159 * 89.99769 * 17 15 13 19 19 H 1.48490 * 109.46986 * 209.99460 * 17 15 13 20 20 H 1.48499 * 109.47095 * 329.99831 * 17 15 13 21 21 C 1.38924 * 120.18935 * 0.25826 * 9 8 7 22 22 C 1.37785 * 120.08956 * 359.44929 * 21 9 8 23 23 H 1.09001 * 109.46995 * 304.77257 * 1 2 3 24 24 H 1.09001 * 109.47237 * 64.77537 * 1 2 3 25 25 H 1.09000 * 109.46731 * 184.77574 * 1 2 3 26 26 H 1.09000 * 109.46975 * 239.99927 * 2 1 3 27 27 H 1.09000 * 109.47187 * 120.00049 * 2 1 3 28 28 H 0.96697 * 114.00013 * 179.97438 * 5 4 3 29 29 H 1.08003 * 120.05172 * 0.04051 * 7 6 3 30 30 H 1.07998 * 119.95566 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.46926 * 299.99508 * 11 10 9 32 32 H 1.08994 * 109.47483 * 59.99672 * 11 10 9 33 33 H 1.09001 * 109.46524 * 299.99504 * 12 11 10 34 34 H 1.08999 * 109.47342 * 59.98839 * 12 11 10 35 35 H 0.96999 * 120.00200 * 180.02562 * 16 15 13 36 36 H 1.07993 * 119.95408 * 179.69650 * 21 9 8 37 37 H 1.07997 * 120.04811 * 180.25005 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2460 2.0315 1.1206 5 8 2.1168 1.3312 2.3445 6 6 2.2805 2.1155 -1.2777 7 6 2.7466 3.4323 -1.2799 8 6 2.9766 4.0776 -2.4755 9 6 2.7450 3.4207 -3.6773 10 8 2.9724 4.0605 -4.8535 11 6 2.7130 3.3267 -6.0519 12 6 3.0255 4.2047 -7.2653 13 6 2.7526 3.4306 -8.5292 14 1 2.3926 2.4139 -8.4727 15 6 2.9634 4.0200 -9.7577 16 7 3.4022 5.2578 -9.8265 17 14 2.6257 3.0602 -11.3244 18 1 1.2166 3.2735 -11.7416 19 1 3.5366 3.5302 -12.3988 20 1 2.8555 1.6139 -11.0780 21 6 2.2758 2.1131 -3.6796 22 6 2.0490 1.4585 -2.4886 23 1 -0.3633 0.5861 0.8442 24 1 -0.3634 0.4380 -0.9297 25 1 -0.3633 -1.0241 0.0856 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.2962 1.8702 3.1269 29 1 2.9267 3.9439 -0.3459 30 1 3.3373 5.0956 -2.4781 31 1 3.3419 2.4367 -6.0763 32 1 1.6642 3.0312 -6.0772 33 1 2.3969 5.0948 -7.2412 34 1 4.0745 4.4999 -7.2398 35 1 3.5502 5.6726 -10.6908 36 1 2.0924 1.6077 -4.6162 37 1 1.6881 0.4406 -2.4912 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019489232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:32 Heat of formation + Delta-G solvation = -44.734624 kcal Electronic energy + Delta-G solvation = -18575.728641 eV Core-core repulsion = 15511.708080 eV Total energy + Delta-G solvation = -3064.020562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.16737 -39.34624 -37.77899 -35.64286 -35.24726 -32.55797 -32.50173 -31.48537 -30.09784 -27.10071 -25.28477 -24.05846 -23.75549 -22.19896 -20.66544 -19.44050 -18.23170 -17.90906 -17.32220 -16.95223 -16.69615 -16.39466 -15.94586 -15.58295 -15.03086 -14.79118 -14.47226 -14.29332 -14.28675 -14.11677 -13.47801 -13.21027 -13.09792 -13.06730 -12.76060 -12.66833 -12.48469 -11.99252 -11.89795 -11.70781 -11.57157 -11.36923 -10.84055 -10.71346 -10.59407 -10.04384 -8.96382 -8.25168 -6.38584 -0.16794 0.36561 1.35900 1.43037 1.44843 1.55932 2.12708 2.25502 2.50354 2.82692 3.09847 3.41823 3.82436 3.94552 4.02318 4.20555 4.30676 4.31377 4.34666 4.39432 4.50501 4.62360 4.73990 4.78013 4.93700 5.00406 5.06856 5.22923 5.29872 5.35481 5.38606 5.42889 5.49378 5.66532 5.78716 5.93183 6.08466 6.50653 6.76893 6.82975 7.31817 8.87979 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.041747 B = 0.003132 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.545268 B = 8939.150423 C = 9505.441325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 C 0.182 3.818 4 N -0.363 5.363 5 O -0.415 6.415 6 C -0.111 4.111 7 C -0.040 4.040 8 C -0.173 4.173 9 C 0.134 3.866 10 O -0.336 6.336 11 C 0.081 3.919 12 C 0.026 3.974 13 C -0.544 4.544 14 H 0.073 0.927 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.975 3.025 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.257 1.257 21 C -0.219 4.219 22 C -0.035 4.035 23 H 0.041 0.959 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.417 0.583 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.066 0.934 32 H 0.067 0.933 33 H -0.002 1.002 34 H -0.002 1.002 35 H 0.266 0.734 36 H 0.143 0.857 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 -10.877 20.125 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C -0.006 4.006 4 N -0.105 5.105 5 O -0.327 6.327 6 C -0.113 4.113 7 C -0.060 4.060 8 C -0.192 4.192 9 C 0.087 3.913 10 O -0.250 6.250 11 C 0.007 3.993 12 C -0.011 4.011 13 C -0.582 4.582 14 H 0.092 0.908 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.798 3.202 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.181 1.181 21 C -0.238 4.238 22 C -0.055 4.055 23 H 0.061 0.939 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.119 0.881 27 H 0.098 0.902 28 H 0.268 0.732 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.016 0.984 34 H 0.017 0.983 35 H 0.075 0.925 36 H 0.161 0.839 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.198 -10.198 20.079 22.909 hybrid contribution -0.061 -0.227 -0.602 0.647 sum -4.259 -10.425 19.477 22.498 Atomic orbital electron populations 1.21628 0.92868 1.03161 1.02004 1.21089 0.97817 0.91955 1.04775 1.23264 0.91979 0.95033 0.90316 1.76433 1.18320 1.23274 0.92473 1.88360 1.91845 1.38898 1.13565 1.18229 1.07928 0.94751 0.90350 1.21206 0.93993 0.93375 0.97388 1.20557 1.07254 1.01863 0.89504 1.19737 0.93304 0.92035 0.86256 1.86096 1.81867 1.43553 1.13473 1.22959 1.00352 0.95131 0.80888 1.18978 0.95914 0.95121 0.91070 1.21419 1.45433 1.00377 0.90992 0.90837 1.26033 0.94433 0.95942 1.03330 1.70117 1.46178 1.14534 1.26339 0.85303 0.78203 0.79091 0.77591 1.19621 1.20908 1.18132 1.21435 1.07312 0.94435 1.00575 1.21275 0.94457 1.00396 0.89359 0.93938 0.91795 0.90043 0.88124 0.90222 0.73194 0.83745 0.84514 0.91566 0.91523 0.98354 0.98350 0.92501 0.83886 0.81996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.90 71.98 0.71 -1.32 16 2 C -0.12 -1.93 5.38 29.85 0.16 -1.77 16 3 C 0.18 3.94 6.36 45.37 0.29 4.23 16 4 N -0.36 -8.30 11.23 -42.94 -0.48 -8.78 16 5 O -0.42 -7.82 13.70 -38.79 -0.53 -8.35 16 6 C -0.11 -2.58 5.87 -20.12 -0.12 -2.70 16 7 C -0.04 -1.00 9.57 22.51 0.22 -0.78 16 8 C -0.17 -4.97 9.97 22.32 0.22 -4.75 16 9 C 0.13 4.36 6.69 22.60 0.15 4.51 16 10 O -0.34 -13.49 10.13 -91.44 -0.93 -14.42 16 11 C 0.08 3.33 4.67 71.98 0.34 3.66 16 12 C 0.03 1.40 5.34 29.85 0.16 1.56 16 13 C -0.54 -29.89 9.11 25.60 0.23 -29.66 16 14 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 15 C 0.00 0.06 5.46 84.66 0.46 0.52 16 16 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 17 Si 0.97 42.64 29.54 68.60 2.03 44.66 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 21 C -0.22 -5.92 9.02 22.33 0.20 -5.72 16 22 C -0.04 -0.76 9.35 22.52 0.21 -0.55 16 23 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.10 1.29 6.47 -2.39 -0.02 1.27 16 27 H 0.08 1.39 7.27 -2.39 -0.02 1.37 16 28 H 0.42 4.04 9.28 -74.06 -0.69 3.36 16 29 H 0.14 3.24 7.55 -2.91 -0.02 3.22 16 30 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 31 H 0.07 2.52 7.66 -2.39 -0.02 2.50 16 32 H 0.07 2.53 7.64 -2.39 -0.02 2.51 16 33 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 36 H 0.14 3.65 6.27 -2.91 -0.02 3.63 16 37 H 0.16 2.39 6.35 -2.91 -0.02 2.38 16 Total: -1.00 -67.54 319.21 4.00 -63.55 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.39 Total: 11.95 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 3.24 Total: -32.76 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -0.20 Total: -64.63 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -1.46 Total: -22.77 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -67.54 4.00 -63.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019489232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.811 kcal (2) G-P(sol) polarization free energy of solvation -67.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds