Wall clock time and date at job start Mon Mar 30 2020 06:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46570 * 2 1 4 4 N 1.46901 * 109.47067 * 240.00074 * 2 1 3 5 5 C 1.46903 * 110.99805 * 84.99993 * 4 2 1 6 6 C 1.50703 * 109.46521 * 179.97438 * 5 4 2 7 7 H 1.07993 * 120.00371 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99670 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99959 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99979 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46894 * 60.00265 * 10 8 6 12 12 H 1.48507 * 109.47107 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47280 * 300.00155 * 10 8 6 14 14 C 1.50697 * 109.46904 * 119.99604 * 2 1 3 15 15 C 1.38255 * 119.93758 * 80.00419 * 14 2 1 16 16 C 1.38196 * 120.10911 * 180.02562 * 15 14 2 17 17 C 1.38698 * 120.06686 * 0.02562 * 16 15 14 18 18 C 1.38974 * 119.82328 * 359.90196 * 17 16 15 19 19 C 1.38188 * 119.94526 * 260.02278 * 14 2 1 20 20 O 1.36105 * 120.77904 * 180.39575 * 18 17 16 21 21 C 1.43182 * 116.71925 * 342.74879 * 20 18 17 22 22 C 1.53467 * 108.24953 * 46.16852 * 21 20 18 23 23 O 1.36113 * 119.39354 * 179.82771 * 17 16 15 24 24 H 1.08994 * 109.46937 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47360 * 300.00345 * 1 2 3 26 26 H 1.09005 * 109.46886 * 60.00569 * 1 2 3 27 27 H 1.00907 * 110.99347 * 208.94969 * 4 2 1 28 28 H 1.08993 * 109.47333 * 299.99548 * 5 4 2 29 29 H 1.09003 * 109.47188 * 60.00195 * 5 4 2 30 30 H 0.96998 * 120.00224 * 179.97438 * 9 8 6 31 31 H 1.07995 * 119.94678 * 359.78139 * 15 14 2 32 32 H 1.08005 * 119.96528 * 179.97438 * 16 15 14 33 33 H 1.07999 * 119.96967 * 0.02562 * 19 14 2 34 34 H 1.08992 * 109.71275 * 286.47571 * 21 20 18 35 35 H 1.09000 * 109.73377 * 165.87848 * 21 20 18 36 36 H 1.09003 * 109.70687 * 180.58278 * 22 21 20 37 37 H 1.09007 * 109.74605 * 59.98105 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5885 -0.5215 -3.5557 7 1 2.8381 -1.5694 -3.4793 8 6 2.7319 0.1354 -4.7595 9 7 2.4275 1.4114 -4.8526 10 14 3.3585 -0.7872 -6.2580 11 1 2.4372 -1.9095 -6.5693 12 1 3.4221 0.1380 -7.4180 13 1 4.7147 -1.3231 -5.9781 14 6 2.0323 -0.7103 1.2305 15 6 2.0662 -2.0920 1.2640 16 6 2.5256 -2.7471 2.3908 17 6 2.9535 -2.0197 3.4915 18 6 2.9209 -0.6307 3.4572 19 6 2.4578 0.0205 2.3234 20 8 3.3436 0.1024 4.5232 21 6 3.4515 -0.5845 5.7748 22 6 4.1715 -1.9176 5.5309 23 8 3.4001 -2.6789 4.5954 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 2.9174 -1.1204 -1.0287 28 1 1.0871 0.6163 -2.5526 29 1 2.7589 1.0463 -2.1182 30 1 2.5287 1.8737 -5.6993 31 1 1.7294 -2.6605 0.4098 32 1 2.5507 -3.8266 2.4147 33 1 2.4296 1.0997 2.2949 34 1 2.4564 -0.7725 6.1779 35 1 4.0247 0.0197 6.4780 36 1 4.2575 -2.4660 6.4690 37 1 5.1646 -1.7304 5.1224 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199700.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:22 Heat of formation + Delta-G solvation = -51.574730 kcal Electronic energy + Delta-G solvation = -19357.516491 eV Core-core repulsion = 16293.199320 eV Total energy + Delta-G solvation = -3064.317171 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.25370 -38.41106 -37.28531 -35.50112 -32.82247 -31.11097 -30.77044 -29.42651 -27.86195 -26.08314 -24.90425 -23.03360 -22.11418 -21.20353 -19.73348 -18.59987 -17.27870 -17.12752 -16.33670 -15.45641 -15.22090 -14.86964 -14.72312 -14.48279 -14.31955 -13.82449 -13.66118 -13.40587 -12.94714 -12.56912 -12.21720 -11.79533 -11.65968 -11.52211 -11.38677 -11.22216 -10.90198 -10.68228 -10.64457 -10.58488 -10.24629 -9.84494 -9.17493 -8.51160 -8.45916 -7.92154 -7.31056 -6.01145 -4.02949 1.38154 1.43138 2.94590 3.13728 3.35471 3.39128 3.42315 3.81108 4.06733 4.44917 4.58142 4.62715 4.67877 4.96241 5.08683 5.17576 5.22614 5.34900 5.39746 5.45583 5.61036 5.87790 5.92687 6.01293 6.18533 6.22859 6.34987 6.47930 6.71402 6.77082 6.83430 6.88552 7.29482 7.41493 7.44345 7.80576 8.14993 8.41123 8.61952 9.06032 9.61744 11.09963 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.034768 B = 0.003811 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.153469 B = 7345.084102 C = 7562.472028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.122 3.878 3 H 0.045 0.955 4 N -0.681 5.681 5 C 0.194 3.806 6 C -0.514 4.514 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.899 3.101 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C -0.069 4.069 15 C -0.092 4.092 16 C -0.115 4.115 17 C 0.038 3.962 18 C 0.045 3.955 19 C -0.110 4.110 20 O -0.309 6.309 21 C 0.021 3.979 22 C 0.021 3.979 23 O -0.310 6.310 24 H 0.059 0.941 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.331 0.669 28 H 0.030 0.970 29 H -0.013 1.013 30 H 0.262 0.738 31 H 0.145 0.855 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.109 -4.948 21.141 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.011 3.989 3 H 0.062 0.938 4 N -0.313 5.313 5 C 0.067 3.933 6 C -0.553 4.553 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.727 3.273 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.070 4.070 15 C -0.111 4.111 16 C -0.134 4.134 17 C -0.006 4.006 18 C 0.001 3.999 19 C -0.129 4.129 20 O -0.224 6.224 21 C -0.054 4.054 22 C -0.055 4.055 23 O -0.225 6.225 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.148 0.852 28 H 0.048 0.952 29 H 0.004 0.996 30 H 0.071 0.929 31 H 0.162 0.838 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.498 -5.026 20.882 21.484 hybrid contribution 1.258 0.228 -0.354 1.327 sum 1.756 -4.798 20.528 21.154 Atomic orbital electron populations 1.21741 0.94182 1.02058 1.00844 1.20413 0.95824 0.95243 0.87378 0.93752 1.60847 1.32588 1.34548 1.03293 1.19609 0.96595 0.90220 0.86844 1.21148 1.43359 0.96741 0.94025 0.91984 1.24983 0.95672 0.94895 0.98993 1.69952 1.48822 1.09010 1.25994 0.86546 0.79349 0.79487 0.81922 1.20147 1.21386 1.20292 1.19951 0.98043 0.93856 0.95155 1.20961 0.98733 0.93953 0.97411 1.20465 1.02175 1.00110 0.90612 1.18874 1.03015 0.89701 0.89030 1.18790 1.02599 0.88965 0.89581 1.20332 1.00785 1.00415 0.91392 1.86303 1.83048 1.36977 1.16094 1.23569 1.02001 0.94573 0.85297 1.23572 0.94613 0.93321 0.93987 1.86289 1.67968 1.37577 1.30700 0.92238 0.93566 0.91977 0.85167 0.95177 0.99562 0.92875 0.83761 0.84985 0.85048 0.90721 0.86385 0.86405 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.39 37.16 0.35 -1.81 16 2 C 0.12 2.18 2.81 -68.86 -0.19 1.99 16 3 H 0.04 0.84 7.66 -51.93 -0.40 0.44 16 4 N -0.68 -14.41 5.68 -109.22 -0.62 -15.03 16 5 C 0.19 5.06 5.24 -4.97 -0.03 5.03 16 6 C -0.51 -14.55 9.32 -34.44 -0.32 -14.87 16 7 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 10 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C -0.07 -1.10 4.71 -104.64 -0.49 -1.59 16 15 C -0.09 -1.37 9.00 -39.59 -0.36 -1.73 16 16 C -0.12 -1.59 9.96 -39.43 -0.39 -1.98 16 17 C 0.04 0.54 6.49 -39.14 -0.25 0.29 16 18 C 0.05 0.66 6.49 -39.14 -0.25 0.41 16 19 C -0.11 -1.67 9.58 -39.43 -0.38 -2.05 16 20 O -0.31 -4.05 10.42 -32.86 -0.34 -4.40 16 21 C 0.02 0.18 7.26 37.40 0.27 0.46 16 22 C 0.02 0.18 7.26 37.40 0.27 0.45 16 23 O -0.31 -3.90 10.42 -32.89 -0.34 -4.24 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.11 7.45 -51.93 -0.39 0.73 16 27 H 0.33 6.85 7.98 -39.29 -0.31 6.54 16 28 H 0.03 0.84 7.43 -51.93 -0.39 0.45 16 29 H -0.01 -0.37 8.06 -51.93 -0.42 -0.79 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.14 2.13 7.71 -52.49 -0.40 1.73 16 32 H 0.13 1.57 8.06 -52.48 -0.42 1.14 16 33 H 0.13 1.88 8.03 -52.49 -0.42 1.46 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 311.00 15.07 4.69 4.69 Total: -1.00 -31.54 311.00 -8.01 -39.55 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.23 Total: 2.78 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -1.87 Total: -13.91 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.12 Total: -41.21 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.69 Total: -8.64 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.54 -8.01 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199700.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.025 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds