Wall clock time and date at job start Mon Mar 30 2020 06:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46570 * 2 1 4 4 N 1.46901 * 109.47067 * 240.00074 * 2 1 3 5 5 C 1.46903 * 110.99805 * 84.99993 * 4 2 1 6 6 C 1.50703 * 109.46521 * 179.97438 * 5 4 2 7 7 H 1.07993 * 120.00371 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99670 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99959 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99979 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46894 * 60.00265 * 10 8 6 12 12 H 1.48507 * 109.47107 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47280 * 300.00155 * 10 8 6 14 14 C 1.50697 * 109.46904 * 119.99604 * 2 1 3 15 15 C 1.38255 * 119.93758 * 80.00419 * 14 2 1 16 16 C 1.38196 * 120.10911 * 180.02562 * 15 14 2 17 17 C 1.38698 * 120.06686 * 0.02562 * 16 15 14 18 18 C 1.38974 * 119.82328 * 359.90196 * 17 16 15 19 19 C 1.38188 * 119.94526 * 260.02278 * 14 2 1 20 20 O 1.36105 * 120.77904 * 180.39575 * 18 17 16 21 21 C 1.43182 * 116.71925 * 342.74879 * 20 18 17 22 22 C 1.53467 * 108.24953 * 46.16852 * 21 20 18 23 23 O 1.36113 * 119.39354 * 179.82771 * 17 16 15 24 24 H 1.08994 * 109.46937 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47360 * 300.00345 * 1 2 3 26 26 H 1.09005 * 109.46886 * 60.00569 * 1 2 3 27 27 H 1.00907 * 110.99347 * 208.94969 * 4 2 1 28 28 H 1.08993 * 109.47333 * 299.99548 * 5 4 2 29 29 H 1.09003 * 109.47188 * 60.00195 * 5 4 2 30 30 H 0.96998 * 120.00224 * 179.97438 * 9 8 6 31 31 H 1.07995 * 119.94678 * 359.78139 * 15 14 2 32 32 H 1.08005 * 119.96528 * 179.97438 * 16 15 14 33 33 H 1.07999 * 119.96967 * 0.02562 * 19 14 2 34 34 H 1.08992 * 109.71275 * 286.47571 * 21 20 18 35 35 H 1.09000 * 109.73377 * 165.87848 * 21 20 18 36 36 H 1.09003 * 109.70687 * 180.58278 * 22 21 20 37 37 H 1.09007 * 109.74605 * 59.98105 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5885 -0.5215 -3.5557 7 1 2.8381 -1.5694 -3.4793 8 6 2.7319 0.1354 -4.7595 9 7 2.4275 1.4114 -4.8526 10 14 3.3585 -0.7872 -6.2580 11 1 2.4372 -1.9095 -6.5693 12 1 3.4221 0.1380 -7.4180 13 1 4.7147 -1.3231 -5.9781 14 6 2.0323 -0.7103 1.2305 15 6 2.0662 -2.0920 1.2640 16 6 2.5256 -2.7471 2.3908 17 6 2.9535 -2.0197 3.4915 18 6 2.9209 -0.6307 3.4572 19 6 2.4578 0.0205 2.3234 20 8 3.3436 0.1024 4.5232 21 6 3.4515 -0.5845 5.7748 22 6 4.1715 -1.9176 5.5309 23 8 3.4001 -2.6789 4.5954 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 2.9174 -1.1204 -1.0287 28 1 1.0871 0.6163 -2.5526 29 1 2.7589 1.0463 -2.1182 30 1 2.5287 1.8737 -5.6993 31 1 1.7294 -2.6605 0.4098 32 1 2.5507 -3.8266 2.4147 33 1 2.4296 1.0997 2.2949 34 1 2.4564 -0.7725 6.1779 35 1 4.0247 0.0197 6.4780 36 1 4.2575 -2.4660 6.4690 37 1 5.1646 -1.7304 5.1224 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199700.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:22 Heat of formation + Delta-G solvation = -72.306417 kcal Electronic energy + Delta-G solvation = -19358.415484 eV Core-core repulsion = 16293.199320 eV Total energy + Delta-G solvation = -3065.216164 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.22008 -39.62190 -38.22439 -37.03786 -34.82510 -32.43824 -31.86887 -30.71600 -28.97190 -28.06036 -25.86039 -24.53663 -23.43193 -22.69634 -20.93095 -19.61411 -18.68204 -18.21356 -17.89542 -16.82448 -16.43598 -16.23905 -16.10134 -15.72297 -15.38604 -15.04342 -14.83784 -14.69380 -14.38094 -14.15087 -13.59526 -13.39917 -13.10477 -13.03331 -12.80800 -12.67336 -12.40509 -12.05556 -11.97679 -11.90526 -11.73213 -11.39789 -11.25634 -10.63241 -9.61631 -9.14301 -9.01361 -8.20205 -6.31127 0.24304 0.31739 1.42882 1.46502 1.54339 2.05328 2.28360 2.42036 2.67742 3.13271 3.30558 3.55658 3.67972 3.76362 3.96637 4.09001 4.17168 4.36176 4.42392 4.45181 4.54288 4.59862 4.63998 4.84352 4.88662 5.00384 5.12250 5.14387 5.16389 5.31980 5.36888 5.56938 5.65490 5.70297 5.91110 6.05729 6.41715 6.46944 6.72702 6.90651 7.39560 8.91280 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.034768 B = 0.003811 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.153469 B = 7345.084102 C = 7562.472028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.123 3.877 3 H 0.030 0.970 4 N -0.674 5.674 5 C 0.209 3.791 6 C -0.535 4.535 7 H 0.066 0.934 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.973 3.027 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.267 1.267 14 C -0.080 4.080 15 C -0.096 4.096 16 C -0.114 4.114 17 C 0.039 3.961 18 C 0.042 3.958 19 C -0.120 4.120 20 O -0.326 6.326 21 C 0.014 3.986 22 C 0.014 3.986 23 O -0.320 6.320 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.334 0.666 28 H 0.005 0.995 29 H -0.043 1.043 30 H 0.265 0.735 31 H 0.143 0.857 32 H 0.152 0.848 33 H 0.132 0.868 34 H 0.081 0.919 35 H 0.153 0.847 36 H 0.157 0.843 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.860 -6.514 22.612 23.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.013 3.987 3 H 0.048 0.952 4 N -0.305 5.305 5 C 0.082 3.918 6 C -0.573 4.573 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.797 3.203 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.192 1.192 14 C -0.080 4.080 15 C -0.114 4.114 16 C -0.133 4.133 17 C -0.006 4.006 18 C -0.003 4.003 19 C -0.139 4.139 20 O -0.241 6.241 21 C -0.061 4.061 22 C -0.061 4.061 23 O -0.235 6.235 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.152 0.848 28 H 0.023 0.977 29 H -0.025 1.025 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.170 0.830 33 H 0.150 0.850 34 H 0.099 0.901 35 H 0.171 0.829 36 H 0.174 0.826 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.251 -6.604 22.392 23.379 hybrid contribution 1.058 0.731 -0.605 1.421 sum 2.308 -5.874 21.786 22.682 Atomic orbital electron populations 1.21689 0.93114 1.02449 1.00968 1.20403 0.96651 0.94472 0.87179 0.95211 1.60735 1.32678 1.33564 1.03489 1.19244 0.94177 0.89955 0.88446 1.21529 1.43624 0.97123 0.95060 0.91565 1.25950 0.95631 0.95746 1.02375 1.70089 1.49730 1.10720 1.26972 0.85385 0.79104 0.78185 0.77615 1.19195 1.20910 1.19185 1.19666 0.99660 0.94263 0.94446 1.20938 0.99102 0.93410 0.97953 1.20654 1.01388 1.01121 0.90102 1.18996 1.02393 0.89586 0.89666 1.18820 1.02241 0.89320 0.89934 1.20357 1.01244 1.00557 0.91763 1.86277 1.82718 1.37979 1.17135 1.23974 1.03122 0.95112 0.83885 1.23956 0.93945 0.93571 0.94593 1.86275 1.68258 1.38428 1.30563 0.91660 0.91162 0.94064 0.84813 0.97658 1.02500 0.92661 0.83945 0.82985 0.84978 0.90084 0.82911 0.82561 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.18 9.39 71.98 0.68 -3.51 16 2 C 0.12 4.53 2.81 44.17 0.12 4.66 16 3 H 0.03 1.19 7.66 -2.39 -0.02 1.17 16 4 N -0.67 -29.30 5.68 -499.45 -2.84 -32.13 16 5 C 0.21 11.38 5.24 85.56 0.45 11.83 16 6 C -0.54 -30.79 9.32 25.60 0.24 -30.55 16 7 H 0.07 3.67 7.81 -2.91 -0.02 3.65 16 8 C 0.00 0.06 5.46 84.66 0.46 0.53 16 9 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 10 Si 0.97 44.62 29.54 68.60 2.03 46.64 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 14 C -0.08 -2.53 4.71 -19.87 -0.09 -2.63 16 15 C -0.10 -2.78 9.00 22.26 0.20 -2.58 16 16 C -0.11 -2.99 9.96 22.37 0.22 -2.77 16 17 C 0.04 1.03 6.49 22.56 0.15 1.18 16 18 C 0.04 1.18 6.49 22.56 0.15 1.32 16 19 C -0.12 -3.64 9.58 22.37 0.21 -3.42 16 20 O -0.33 -8.01 10.42 -82.52 -0.86 -8.87 16 21 C 0.01 0.20 7.26 72.14 0.52 0.72 16 22 C 0.01 0.20 7.26 72.14 0.52 0.72 16 23 O -0.32 -7.24 10.42 -82.61 -0.86 -8.10 16 24 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.04 1.53 7.45 -2.38 -0.02 1.51 16 27 H 0.33 14.11 7.98 -89.69 -0.72 13.40 16 28 H 0.01 0.31 7.43 -2.39 -0.02 0.30 16 29 H -0.04 -2.52 8.06 -2.39 -0.02 -2.54 16 30 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.14 4.14 7.71 -2.91 -0.02 4.12 16 32 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 33 H 0.13 3.85 8.03 -2.91 -0.02 3.83 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.16 0.94 8.14 -2.39 -0.02 0.93 16 37 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -68.60 311.00 1.94 -66.66 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.35 Total: 17.16 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 3.83 Total: -24.51 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -2.55 Total: -88.98 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -1.72 Total: -16.98 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.60 1.94 -66.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199700.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.643 kcal (2) G-P(sol) polarization free energy of solvation -68.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds