Wall clock time and date at job start Mon Mar 30 2020 07:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45203 * 109.47175 * 2 1 4 4 C 1.34760 * 116.99852 * 180.02562 * 3 2 1 5 5 O 1.21513 * 120.00371 * 0.02562 * 4 3 2 6 6 C 1.47382 * 119.99756 * 180.02562 * 4 3 2 7 7 C 1.39855 * 120.07617 * 179.97438 * 6 4 3 8 8 C 1.37108 * 119.92640 * 180.02562 * 7 6 4 9 9 C 1.39237 * 120.07451 * 0.02562 * 8 7 6 10 10 N 1.39009 * 119.92230 * 179.97438 * 9 8 7 11 11 C 1.46506 * 119.99585 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47035 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47300 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99822 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00339 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00355 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99771 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47174 * 89.99890 * 17 15 13 19 19 H 1.48501 * 109.47062 * 209.99841 * 17 15 13 20 20 H 1.48504 * 109.46913 * 329.99640 * 17 15 13 21 21 C 1.39239 * 120.14671 * 0.26964 * 9 8 7 22 22 C 1.37107 * 120.07624 * 359.45097 * 21 9 8 23 23 H 1.09006 * 109.46856 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47032 * 299.99894 * 1 2 3 25 25 H 1.08994 * 109.47024 * 60.00014 * 1 2 3 26 26 H 1.09004 * 109.46886 * 240.00385 * 2 1 3 27 27 H 1.09000 * 109.47698 * 120.00080 * 2 1 3 28 28 H 1.08004 * 120.03303 * 359.97438 * 7 6 4 29 29 H 1.07998 * 119.96032 * 179.97438 * 8 7 6 30 30 H 0.96999 * 120.00335 * 359.97438 * 10 9 8 31 31 H 1.09004 * 109.47073 * 299.99720 * 11 10 9 32 32 H 1.09000 * 109.47212 * 59.99802 * 11 10 9 33 33 H 1.09004 * 109.46930 * 299.99770 * 12 11 10 34 34 H 1.09004 * 109.47059 * 59.99372 * 12 11 10 35 35 H 0.96991 * 119.99886 * 180.02562 * 16 15 13 36 36 H 1.08002 * 119.96113 * 179.72582 * 21 9 8 37 37 H 1.08000 * 120.04101 * 180.27540 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3500 1.5455 -0.0005 5 8 4.0902 0.5819 -0.0015 6 6 3.9133 2.9074 0.0000 7 6 5.2995 3.0925 0.0000 8 6 5.8203 4.3609 0.0010 9 6 4.9706 5.4640 0.0026 10 7 5.5020 6.7485 0.0042 11 6 4.6095 7.9103 0.0064 12 6 5.4428 9.1935 0.0072 13 6 4.5248 10.3886 0.0089 14 1 3.4541 10.2471 0.0089 15 6 5.0517 11.6627 0.0103 16 7 4.2506 12.7057 0.0113 17 14 6.9037 11.9075 0.0095 18 1 7.3935 11.9743 -1.3908 19 1 7.2360 13.1734 0.7111 20 1 7.5537 10.7693 0.7076 21 6 3.5900 5.2832 0.0088 22 6 3.0627 4.0177 0.0020 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 5.9591 2.2373 0.0000 29 1 6.8907 4.5044 0.0014 30 1 6.4636 6.8756 0.0046 31 1 3.9802 7.8868 -0.8833 32 1 3.9812 7.8841 0.8967 33 1 6.0724 9.2173 0.8967 34 1 6.0709 9.2194 -0.8833 35 1 4.6214 13.6020 0.0119 36 1 2.9338 6.1410 0.0145 37 1 1.9917 3.8782 0.0024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029216995.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:52 Heat of formation + Delta-G solvation = -74.913998 kcal Electronic energy + Delta-G solvation = -18435.303604 eV Core-core repulsion = 15369.974367 eV Total energy + Delta-G solvation = -3065.329237 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.48085 -39.13189 -36.63875 -35.78047 -33.17654 -32.02671 -31.12523 -30.80074 -28.68229 -25.27025 -23.80879 -22.93836 -22.31277 -20.87067 -20.36337 -18.01546 -17.44265 -16.94186 -16.57883 -16.46115 -15.26121 -14.57405 -14.54448 -14.27103 -14.23451 -13.81873 -13.45318 -13.37419 -12.99472 -12.81402 -12.68818 -12.34424 -12.11157 -11.78951 -11.63382 -11.39930 -10.86225 -10.65928 -10.65670 -10.44837 -10.21323 -10.02510 -9.75010 -9.44707 -9.00654 -8.69981 -7.32852 -6.19852 -4.20875 0.99439 1.53782 2.66245 2.70252 3.19670 3.28141 3.28581 3.66512 3.97155 4.30427 4.69957 4.70754 4.82623 4.88552 5.02660 5.03909 5.13373 5.39629 5.41012 5.53305 5.56271 5.63341 5.72711 5.89899 5.98785 6.07339 6.22143 6.33051 6.38439 6.46723 6.52292 6.75551 6.94673 7.10230 7.41428 7.59578 7.83180 7.86415 8.33553 8.82555 9.40267 10.92940 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.041843 B = 0.003060 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.006086 B = 9149.026558 C = 9786.980431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.357 6.357 4 C 0.518 3.482 5 O -0.527 6.527 6 C -0.215 4.215 7 C 0.000 4.000 8 C -0.223 4.223 9 C 0.266 3.734 10 N -0.726 5.726 11 C 0.126 3.874 12 C -0.022 4.022 13 C -0.526 4.526 14 H 0.076 0.924 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.882 3.118 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.267 1.267 21 C -0.218 4.218 22 C -0.006 4.006 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.130 0.870 29 H 0.127 0.873 30 H 0.400 0.600 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.022 0.978 34 H 0.018 0.982 35 H 0.266 0.734 36 H 0.133 0.867 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.500 -21.304 0.002 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.275 6.275 4 C 0.366 3.634 5 O -0.418 6.418 6 C -0.219 4.219 7 C -0.020 4.020 8 C -0.246 4.246 9 C 0.154 3.846 10 N -0.348 5.348 11 C 0.003 3.997 12 C -0.060 4.060 13 C -0.564 4.564 14 H 0.094 0.906 15 C -0.132 4.132 16 N -0.535 5.535 17 Si 0.709 3.291 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.240 4.240 22 C -0.025 4.025 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.235 0.765 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.151 0.849 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.463 -21.173 0.005 21.316 hybrid contribution 1.341 0.245 -0.020 1.363 sum -1.122 -20.929 -0.015 20.959 Atomic orbital electron populations 1.21806 0.92717 1.02825 1.03631 1.22967 0.95222 0.80467 1.02421 1.86562 1.24395 1.31890 1.84626 1.21164 0.80102 0.90077 0.72071 1.90791 1.60366 1.42801 1.47833 1.18657 0.93825 0.89361 1.20066 1.20720 0.93088 0.96889 0.91254 1.20390 0.99343 0.91107 1.13717 1.18280 0.92833 0.85513 0.87942 1.45356 1.09676 1.03067 1.76695 1.21658 0.93100 0.83977 1.00941 1.19766 0.96568 0.92635 0.96995 1.20874 0.94591 0.88812 1.52151 0.90624 1.24993 0.98052 0.95918 0.94225 1.69891 1.35053 0.98436 1.50075 0.86757 0.85935 0.77850 0.78569 1.20178 1.21179 1.19121 1.20604 0.93297 0.97948 1.12185 1.21009 0.99599 0.91004 0.90931 0.90384 0.91425 0.91420 0.91405 0.91405 0.85167 0.85534 0.76543 0.92045 0.92023 0.95938 0.96374 0.92441 0.84903 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.29 37.16 0.38 -0.62 16 2 C 0.06 0.59 6.20 37.16 0.23 0.82 16 3 O -0.36 -4.37 9.46 -40.66 -0.38 -4.76 16 4 C 0.52 7.27 7.89 34.45 0.27 7.55 16 5 O -0.53 -8.40 16.13 -19.28 -0.31 -8.71 16 6 C -0.22 -2.94 5.88 -104.96 -0.62 -3.55 16 7 C 0.00 0.00 9.56 -39.39 -0.38 -0.38 16 8 C -0.22 -2.84 9.85 -39.62 -0.39 -3.23 16 9 C 0.27 3.77 6.65 -83.86 -0.56 3.21 16 10 N -0.73 -10.87 5.71 -58.63 -0.33 -11.21 16 11 C 0.13 2.24 4.83 -4.04 -0.02 2.22 16 12 C -0.02 -0.47 4.16 -27.88 -0.12 -0.59 16 13 C -0.53 -14.05 9.66 -34.44 -0.33 -14.38 16 14 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 17 Si 0.88 20.60 27.47 -169.99 -4.67 15.93 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 21 C -0.22 -3.01 9.26 -39.62 -0.37 -3.38 16 22 C -0.01 -0.08 9.58 -39.38 -0.38 -0.46 16 23 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.13 1.57 7.64 -52.48 -0.40 1.17 16 29 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.40 5.42 8.47 -40.82 -0.35 5.08 16 31 H 0.06 1.10 7.94 -51.93 -0.41 0.69 16 32 H 0.06 1.11 7.92 -51.93 -0.41 0.70 16 33 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 34 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.13 1.81 6.69 -52.49 -0.35 1.46 16 37 H 0.13 1.47 7.60 -52.49 -0.40 1.07 16 LS Contribution 318.84 15.07 4.80 4.80 Total: -1.00 -30.38 318.84 -7.70 -38.08 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.21 Total: 2.56 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -2.37 Total: -10.93 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.44 Total: -36.98 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.70 Total: -13.47 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.38 -7.70 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029216995.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.834 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds