Wall clock time and date at job start Mon Mar 30 2020 07:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45203 * 109.47175 * 2 1 4 4 C 1.34760 * 116.99852 * 180.02562 * 3 2 1 5 5 O 1.21513 * 120.00371 * 0.02562 * 4 3 2 6 6 C 1.47382 * 119.99756 * 180.02562 * 4 3 2 7 7 C 1.39855 * 120.07617 * 179.97438 * 6 4 3 8 8 C 1.37108 * 119.92640 * 180.02562 * 7 6 4 9 9 C 1.39237 * 120.07451 * 0.02562 * 8 7 6 10 10 N 1.39009 * 119.92230 * 179.97438 * 9 8 7 11 11 C 1.46506 * 119.99585 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47035 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47300 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99822 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00339 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00355 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99771 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47174 * 89.99890 * 17 15 13 19 19 H 1.48501 * 109.47062 * 209.99841 * 17 15 13 20 20 H 1.48504 * 109.46913 * 329.99640 * 17 15 13 21 21 C 1.39239 * 120.14671 * 0.26964 * 9 8 7 22 22 C 1.37107 * 120.07624 * 359.45097 * 21 9 8 23 23 H 1.09006 * 109.46856 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47032 * 299.99894 * 1 2 3 25 25 H 1.08994 * 109.47024 * 60.00014 * 1 2 3 26 26 H 1.09004 * 109.46886 * 240.00385 * 2 1 3 27 27 H 1.09000 * 109.47698 * 120.00080 * 2 1 3 28 28 H 1.08004 * 120.03303 * 359.97438 * 7 6 4 29 29 H 1.07998 * 119.96032 * 179.97438 * 8 7 6 30 30 H 0.96999 * 120.00335 * 359.97438 * 10 9 8 31 31 H 1.09004 * 109.47073 * 299.99720 * 11 10 9 32 32 H 1.09000 * 109.47212 * 59.99802 * 11 10 9 33 33 H 1.09004 * 109.46930 * 299.99770 * 12 11 10 34 34 H 1.09004 * 109.47059 * 59.99372 * 12 11 10 35 35 H 0.96991 * 119.99886 * 180.02562 * 16 15 13 36 36 H 1.08002 * 119.96113 * 179.72582 * 21 9 8 37 37 H 1.08000 * 120.04101 * 180.27540 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3500 1.5455 -0.0005 5 8 4.0902 0.5819 -0.0015 6 6 3.9133 2.9074 0.0000 7 6 5.2995 3.0925 0.0000 8 6 5.8203 4.3609 0.0010 9 6 4.9706 5.4640 0.0026 10 7 5.5020 6.7485 0.0042 11 6 4.6095 7.9103 0.0064 12 6 5.4428 9.1935 0.0072 13 6 4.5248 10.3886 0.0089 14 1 3.4541 10.2471 0.0089 15 6 5.0517 11.6627 0.0103 16 7 4.2506 12.7057 0.0113 17 14 6.9037 11.9075 0.0095 18 1 7.3935 11.9743 -1.3908 19 1 7.2360 13.1734 0.7111 20 1 7.5537 10.7693 0.7076 21 6 3.5900 5.2832 0.0088 22 6 3.0627 4.0177 0.0020 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 5.9591 2.2373 0.0000 29 1 6.8907 4.5044 0.0014 30 1 6.4636 6.8756 0.0046 31 1 3.9802 7.8868 -0.8833 32 1 3.9812 7.8841 0.8967 33 1 6.0724 9.2173 0.8967 34 1 6.0709 9.2194 -0.8833 35 1 4.6214 13.6020 0.0119 36 1 2.9338 6.1410 0.0145 37 1 1.9917 3.8782 0.0024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029216995.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:51 Heat of formation + Delta-G solvation = -92.399917 kcal Electronic energy + Delta-G solvation = -18436.061851 eV Core-core repulsion = 15369.974367 eV Total energy + Delta-G solvation = -3066.087484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.52038 -40.20465 -37.69052 -37.06372 -35.02997 -33.00793 -32.36272 -31.95729 -29.99422 -26.81505 -24.81621 -24.05345 -23.37815 -22.24125 -21.56345 -19.16726 -18.94852 -18.37289 -17.57690 -17.50418 -16.50702 -16.26465 -15.95992 -15.50485 -15.12040 -14.99879 -14.59363 -14.51918 -14.34622 -14.02292 -13.58488 -13.45268 -13.29877 -13.08339 -12.86547 -12.49170 -12.26369 -12.00812 -11.91947 -11.78112 -11.55036 -11.49672 -11.45121 -11.04740 -10.77594 -10.02964 -8.46966 -8.30961 -6.37024 -0.08311 0.51325 1.37676 1.39308 1.49884 1.62185 1.74825 2.34930 2.45789 2.92050 3.04728 3.80206 3.88690 4.02551 4.03796 4.11758 4.28487 4.37223 4.39844 4.46368 4.50049 4.65159 4.78932 4.84491 4.95016 5.06359 5.12736 5.17408 5.28470 5.34541 5.41398 5.44976 5.51664 5.56960 5.77086 6.19479 6.28269 6.68380 6.78549 6.80527 7.27959 8.85264 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.041843 B = 0.003060 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.006086 B = 9149.026558 C = 9786.980431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.519 3.481 5 O -0.551 6.551 6 C -0.224 4.224 7 C -0.004 4.004 8 C -0.213 4.213 9 C 0.254 3.746 10 N -0.724 5.724 11 C 0.143 3.857 12 C -0.017 4.017 13 C -0.534 4.534 14 H 0.038 0.962 15 C 0.006 3.994 16 N -0.948 5.948 17 Si 0.952 3.048 18 H -0.268 1.268 19 H -0.288 1.288 20 H -0.242 1.242 21 C -0.228 4.228 22 C -0.002 4.002 23 H 0.101 0.899 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.140 0.860 29 H 0.150 0.850 30 H 0.409 0.591 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.030 0.970 34 H 0.028 0.972 35 H 0.267 0.733 36 H 0.130 0.870 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.159 -22.904 0.006 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.019 4.019 3 O -0.277 6.277 4 C 0.367 3.633 5 O -0.444 6.444 6 C -0.227 4.227 7 C -0.023 4.023 8 C -0.236 4.236 9 C 0.144 3.856 10 N -0.349 5.349 11 C 0.019 3.981 12 C -0.055 4.055 13 C -0.572 4.572 14 H 0.057 0.943 15 C -0.191 4.191 16 N -0.589 5.589 17 Si 0.775 3.225 18 H -0.193 1.193 19 H -0.214 1.214 20 H -0.165 1.165 21 C -0.251 4.251 22 C -0.021 4.021 23 H 0.119 0.881 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.157 0.843 29 H 0.168 0.832 30 H 0.245 0.755 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.148 0.852 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.133 -22.820 0.009 22.848 hybrid contribution 0.776 0.634 -0.023 1.003 sum -0.357 -22.186 -0.014 22.188 Atomic orbital electron populations 1.21827 0.90431 1.04390 1.03688 1.23285 0.97008 0.79116 1.02535 1.86560 1.23351 1.33701 1.84094 1.21255 0.80578 0.89927 0.71505 1.90774 1.61005 1.43488 1.49108 1.18850 0.94400 0.89455 1.20033 1.20896 0.93061 0.97391 0.90998 1.20582 1.00395 0.90295 1.12280 1.18417 0.93163 0.85423 0.88611 1.45020 1.09641 1.02434 1.77758 1.21216 0.92708 0.83695 1.00510 1.19644 0.96093 0.92192 0.97553 1.21255 0.93932 0.90986 1.51061 0.94347 1.25992 1.03589 0.95581 0.93973 1.70052 1.37598 0.99088 1.52115 0.85635 0.79366 0.78337 0.79120 1.19277 1.21375 1.16531 1.20703 0.93500 0.98266 1.12587 1.21121 1.00371 0.90423 0.90220 0.88059 0.91345 0.91340 0.91333 0.91331 0.84250 0.83211 0.75497 0.92630 0.92627 0.95196 0.95333 0.92394 0.85178 0.83536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.29 71.98 0.74 -0.91 16 2 C 0.05 0.94 6.20 71.98 0.45 1.39 16 3 O -0.36 -8.40 9.46 -56.71 -0.54 -8.94 16 4 C 0.52 14.04 7.89 70.23 0.55 14.59 16 5 O -0.55 -17.11 16.13 19.79 0.32 -16.79 16 6 C -0.22 -5.80 5.88 -20.09 -0.12 -5.91 16 7 C 0.00 -0.10 9.56 22.40 0.21 0.11 16 8 C -0.21 -4.91 9.85 22.24 0.22 -4.69 16 9 C 0.25 6.72 6.65 38.49 0.26 6.98 16 10 N -0.72 -20.22 5.71 -339.41 -1.94 -22.16 16 11 C 0.14 4.95 4.83 86.38 0.42 5.37 16 12 C -0.02 -0.71 4.16 29.85 0.12 -0.59 16 13 C -0.53 -28.85 9.66 25.60 0.25 -28.60 16 14 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 15 C 0.01 0.34 5.47 84.65 0.46 0.80 16 16 N -0.95 -57.53 13.96 21.45 0.30 -57.23 16 17 Si 0.95 41.73 27.47 68.60 1.88 43.62 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 19 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.24 -9.57 6.54 99.48 0.65 -8.92 16 21 C -0.23 -6.05 9.26 22.24 0.21 -5.84 16 22 C 0.00 -0.06 9.58 22.40 0.21 0.16 16 23 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.14 3.10 7.64 -2.91 -0.02 3.08 16 29 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.41 9.93 8.47 -92.71 -0.79 9.14 16 31 H 0.06 1.98 7.94 -2.38 -0.02 1.96 16 32 H 0.06 1.98 7.92 -2.39 -0.02 1.96 16 33 H 0.03 1.22 7.20 -2.38 -0.02 1.20 16 34 H 0.03 1.14 7.57 -2.39 -0.02 1.13 16 35 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 36 H 0.13 3.49 6.69 -2.91 -0.02 3.47 16 37 H 0.15 3.07 7.60 -2.91 -0.02 3.05 16 Total: -1.00 -65.51 318.84 4.24 -61.27 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.23 Total: 17.38 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 3.98 Total: -17.15 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -1.64 Total: -79.38 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.22 Total: -25.73 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.88 Total: 43.62 kcal Total: -65.51 4.24 -61.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029216995.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.131 kcal (2) G-P(sol) polarization free energy of solvation -65.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds