Wall clock time and date at job start Mon Mar 30 2020 06:58:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.08998 * 109.47035 * 2 1
4 4 C 1.52994 * 109.46739 * 120.00572 * 2 1 3
5 5 N 1.46502 * 109.46886 * 182.19639 * 4 2 1
6 6 C 1.46496 * 120.00480 * 78.94100 * 5 4 2
7 7 C 1.50704 * 109.47428 * 90.00076 * 6 5 4
8 8 H 1.08001 * 119.99394 * 0.02562 * 7 6 5
9 9 C 1.37872 * 120.00146 * 180.02562 * 7 6 5
10 10 N 1.31510 * 120.00277 * 0.02562 * 9 7 6
11 11 Si 1.86802 * 120.00050 * 180.02562 * 9 7 6
12 12 H 1.48504 * 109.46931 * 0.02562 * 11 9 7
13 13 H 1.48493 * 109.47286 * 119.99832 * 11 9 7
14 14 H 1.48501 * 109.47115 * 240.00019 * 11 9 7
15 15 C 1.39683 * 119.99686 * 258.94429 * 5 4 2
16 16 C 1.38908 * 120.07232 * 352.31748 * 15 5 4
17 17 C 1.38108 * 119.92381 * 179.76739 * 16 15 5
18 18 C 1.38287 * 120.07155 * 0.51795 * 17 16 15
19 19 C 1.38290 * 120.15260 * 359.73537 * 18 17 16
20 20 C 1.38108 * 120.07154 * 0.02562 * 19 18 17
21 21 C 1.50696 * 109.46862 * 240.00193 * 2 1 3
22 22 O 1.20823 * 120.00354 * 238.25436 * 21 2 1
23 23 O 1.34232 * 119.99922 * 58.25739 * 21 2 1
24 24 H 1.09004 * 109.47021 * 300.00015 * 1 2 3
25 25 H 1.09003 * 109.47098 * 59.99381 * 1 2 3
26 26 H 1.08997 * 109.47368 * 179.97438 * 1 2 3
27 27 H 1.09006 * 109.47043 * 302.18684 * 4 2 1
28 28 H 1.08996 * 109.47839 * 62.19593 * 4 2 1
29 29 H 1.09000 * 109.47554 * 210.00362 * 6 5 4
30 30 H 1.09006 * 109.47058 * 329.99947 * 6 5 4
31 31 H 0.96993 * 120.00564 * 180.02562 * 10 9 7
32 32 H 1.08002 * 120.04210 * 0.02562 * 16 15 5
33 33 H 1.08000 * 119.96462 * 180.25678 * 17 16 15
34 34 H 1.08000 * 119.92655 * 179.72085 * 18 17 16
35 35 H 1.07994 * 119.96735 * 179.97438 * 19 18 17
36 36 H 1.07996 * 120.03661 * 179.97438 * 20 19 18
37 37 H 0.96708 * 117.00044 * 179.97438 * 23 21 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7214 1.2491
5 7 3.5040 -0.6757 1.2759
6 6 4.1911 0.5410 1.7161
7 6 4.4172 0.4796 3.2049
8 1 4.0829 -0.3800 3.7668
9 6 5.0508 1.5208 3.8494
10 7 5.4574 2.5677 3.1652
11 14 5.3316 1.4444 5.6946
12 1 4.7852 0.1699 6.2261
13 1 6.7878 1.5139 5.9770
14 1 4.6456 2.5882 6.3475
15 6 4.2449 -1.7923 0.8817
16 6 3.6030 -2.9955 0.6172
17 6 4.3380 -4.0963 0.2230
18 6 5.7125 -4.0045 0.1017
19 6 6.3552 -2.8097 0.3693
20 6 5.6257 -1.7037 0.7592
21 6 2.0323 -0.7104 -1.2305
22 8 2.7527 -1.6740 -1.1200
23 8 1.6794 -0.2725 -2.4493
24 1 -0.3633 0.5139 0.8900
25 1 -0.3633 0.5139 -0.8899
26 1 -0.3634 -1.0276 -0.0005
27 1 1.6449 -0.2307 2.1388
28 1 1.7092 -1.7597 1.2297
29 1 5.1509 0.6211 1.2059
30 1 3.5789 1.4106 1.4771
31 1 5.9034 3.3000 3.6186
32 1 2.5300 -3.0690 0.7158
33 1 3.8392 -5.0310 0.0132
34 1 6.2854 -4.8681 -0.2024
35 1 7.4288 -2.7415 0.2740
36 1 6.1282 -0.7710 0.9684
37 1 2.0267 -0.7603 -3.2087
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000035759427.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:58:31
Heat of formation + Delta-G solvation = -54.257566 kcal
Electronic energy + Delta-G solvation = -20424.094200 eV
Core-core repulsion = 17359.660693 eV
Total energy + Delta-G solvation = -3064.433507 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.131 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.20459 -38.54269 -36.23890 -35.47255 -33.57198 -32.40265 -30.15474 -28.89468
-27.40010 -25.05224 -24.31779 -22.78785 -21.30736 -20.49044 -19.37075 -17.77750
-17.13332 -16.40702 -16.19379 -15.50945 -14.85185 -14.74243 -14.09037 -13.74704
-13.65375 -13.29668 -13.16670 -12.70501 -12.49986 -12.18920 -11.83265 -11.73227
-11.55328 -11.21361 -11.18493 -11.00839 -10.84018 -10.61996 -10.58734 -10.21588
-9.97743 -9.77757 -9.66875 -8.70603 -8.48991 -7.97658 -6.38403 -5.97273
-4.15422 2.34676 2.45143 2.66787 3.25932 3.31354 3.34359 3.39305
4.12591 4.41799 4.78683 5.00781 5.14094 5.21921 5.24856 5.53897
5.70502 5.71024 5.77236 5.81435 5.94637 6.08118 6.12991 6.23388
6.33943 6.48462 6.58740 6.79074 6.81133 7.07664 7.22229 7.34407
7.38292 7.49363 7.78265 7.84343 8.18961 8.23403 8.36442 8.60612
8.95001 9.51576 10.97007
Molecular weight = 263.13amu
Principal moments of inertia in cm(-1)
A = 0.015848 B = 0.007809 C = 0.005911
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1766.325800 B = 3584.661493 C = 4735.988436
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.104 4.104
3 H 0.111 0.889
4 C 0.139 3.861
5 N -0.617 5.617
6 C 0.251 3.749
7 C -0.528 4.528
8 H 0.060 0.940
9 C 0.061 3.939
10 N -0.896 5.896
11 Si 0.895 3.105
12 H -0.273 1.273
13 H -0.283 1.283
14 H -0.284 1.284
15 C 0.254 3.746
16 C -0.157 4.157
17 C -0.092 4.092
18 C -0.201 4.201
19 C -0.087 4.087
20 C -0.192 4.192
21 C 0.470 3.530
22 O -0.482 6.482
23 O -0.526 6.526
24 H 0.072 0.928
25 H 0.066 0.934
26 H 0.057 0.943
27 H 0.085 0.915
28 H 0.076 0.924
29 H 0.034 0.966
30 H 0.027 0.973
31 H 0.263 0.737
32 H 0.107 0.893
33 H 0.102 0.898
34 H 0.101 0.899
35 H 0.106 0.894
36 H 0.124 0.876
37 H 0.402 0.598
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.954 -6.376 -8.087 13.012
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.125 4.125
3 H 0.128 0.872
4 C 0.014 3.986
5 N -0.324 5.324
6 C 0.131 3.869
7 C -0.567 4.567
8 H 0.078 0.922
9 C -0.141 4.141
10 N -0.535 5.535
11 Si 0.723 3.277
12 H -0.197 1.197
13 H -0.209 1.209
14 H -0.210 1.210
15 C 0.150 3.850
16 C -0.180 4.180
17 C -0.111 4.111
18 C -0.221 4.221
19 C -0.106 4.106
20 C -0.214 4.214
21 C 0.312 3.688
22 O -0.368 6.368
23 O -0.338 6.338
24 H 0.091 0.909
25 H 0.085 0.915
26 H 0.077 0.923
27 H 0.103 0.897
28 H 0.094 0.906
29 H 0.052 0.948
30 H 0.045 0.955
31 H 0.072 0.928
32 H 0.124 0.876
33 H 0.120 0.880
34 H 0.119 0.881
35 H 0.124 0.876
36 H 0.142 0.858
37 H 0.260 0.740
Dipole moment (debyes) X Y Z Total
from point charges -7.907 -6.073 -7.608 12.542
hybrid contribution 0.520 -0.105 0.453 0.697
sum -7.388 -6.178 -7.155 11.998
Atomic orbital electron populations
1.21694 0.92227 1.02515 1.03305 1.21682 0.97498 1.02251 0.91058
0.87156 1.21206 0.82701 1.00234 0.94452 1.46940 1.02909 1.13535
1.69015 1.19224 0.92703 0.80513 0.94462 1.21635 1.37902 1.03974
0.93176 0.92160 1.24956 0.95410 0.95240 0.98500 1.69933 1.39921
1.07821 1.35825 0.86486 0.77986 0.77975 0.85286 1.19726 1.20923
1.21008 1.17676 0.90648 0.86658 0.90034 1.20347 0.98455 0.91978
1.07172 1.20586 0.93892 0.97098 0.99522 1.20572 0.94518 0.97593
1.09443 1.20700 0.98452 0.92882 0.98562 1.20798 0.92844 0.99781
1.07978 1.23718 0.77781 0.82972 0.84337 1.90936 1.33176 1.26258
1.86415 1.84533 1.71662 1.60502 1.17126 0.90878 0.91478 0.92348
0.89696 0.90627 0.94776 0.95549 0.92773 0.87562 0.88006 0.88125
0.87598 0.85833 0.74021
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.51 9.11 37.16 0.34 -1.17 16
2 C -0.10 -1.51 2.99 -91.77 -0.27 -1.78 16
3 H 0.11 1.71 7.67 -51.93 -0.40 1.31 16
4 C 0.14 2.36 4.84 -4.04 -0.02 2.34 16
5 N -0.62 -13.04 2.33 -173.12 -0.40 -13.44 16
6 C 0.25 6.20 5.05 -5.19 -0.03 6.17 16
7 C -0.53 -14.29 9.39 -34.44 -0.32 -14.62 16
8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16
9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
10 N -0.90 -25.54 13.29 55.43 0.74 -24.81 16
11 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16
12 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16
13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
14 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16
15 C 0.25 5.42 5.04 -83.78 -0.42 5.00 16
16 C -0.16 -3.03 6.55 -39.38 -0.26 -3.29 16
17 C -0.09 -1.65 10.04 -39.61 -0.40 -2.05 16
18 C -0.20 -3.59 10.04 -39.54 -0.40 -3.99 16
19 C -0.09 -1.67 10.04 -39.61 -0.40 -2.07 16
20 C -0.19 -4.18 9.27 -39.38 -0.36 -4.55 16
21 C 0.47 7.17 7.50 36.00 0.27 7.44 16
22 O -0.48 -8.67 11.27 -18.75 -0.21 -8.88 16
23 O -0.53 -6.52 13.27 -39.26 -0.52 -7.04 16
24 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16
25 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16
26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
27 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16
28 H 0.08 1.21 5.47 -51.93 -0.28 0.92 16
29 H 0.03 0.92 5.95 -51.93 -0.31 0.61 16
30 H 0.03 0.67 7.59 -51.93 -0.39 0.28 16
31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16
32 H 0.11 1.91 5.51 -52.49 -0.29 1.62 16
33 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16
34 H 0.10 1.54 8.06 -52.49 -0.42 1.11 16
35 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16
36 H 0.12 2.90 6.01 -52.49 -0.32 2.58 16
37 H 0.40 3.42 9.10 45.56 0.41 3.84 16
LS Contribution 306.43 15.07 4.62 4.62
Total: -1.00 -31.17 306.43 -7.25 -38.42
By element:
Atomic # 1 Polarization: 9.93 SS G_CDS: -4.08 Total: 5.85 kcal
Atomic # 6 Polarization: -8.62 SS G_CDS: -2.37 Total: -10.99 kcal
Atomic # 7 Polarization: -38.58 SS G_CDS: 0.33 Total: -38.25 kcal
Atomic # 8 Polarization: -15.18 SS G_CDS: -0.73 Total: -15.92 kcal
Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal
Total LS contribution 4.62 Total: 4.62 kcal
Total: -31.17 -7.25 -38.42 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000035759427.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.841 kcal
(2) G-P(sol) polarization free energy of solvation -31.168 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.010 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.258 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds