Wall clock time and date at job start Mon Mar 30 2020 06:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47035 * 2 1 4 4 C 1.52994 * 109.46739 * 120.00572 * 2 1 3 5 5 N 1.46502 * 109.46886 * 182.19639 * 4 2 1 6 6 C 1.46496 * 120.00480 * 78.94100 * 5 4 2 7 7 C 1.50704 * 109.47428 * 90.00076 * 6 5 4 8 8 H 1.08001 * 119.99394 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00146 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00277 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00050 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46931 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47286 * 119.99832 * 11 9 7 14 14 H 1.48501 * 109.47115 * 240.00019 * 11 9 7 15 15 C 1.39683 * 119.99686 * 258.94429 * 5 4 2 16 16 C 1.38908 * 120.07232 * 352.31748 * 15 5 4 17 17 C 1.38108 * 119.92381 * 179.76739 * 16 15 5 18 18 C 1.38287 * 120.07155 * 0.51795 * 17 16 15 19 19 C 1.38290 * 120.15260 * 359.73537 * 18 17 16 20 20 C 1.38108 * 120.07154 * 0.02562 * 19 18 17 21 21 C 1.50696 * 109.46862 * 240.00193 * 2 1 3 22 22 O 1.20823 * 120.00354 * 238.25436 * 21 2 1 23 23 O 1.34232 * 119.99922 * 58.25739 * 21 2 1 24 24 H 1.09004 * 109.47021 * 300.00015 * 1 2 3 25 25 H 1.09003 * 109.47098 * 59.99381 * 1 2 3 26 26 H 1.08997 * 109.47368 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47043 * 302.18684 * 4 2 1 28 28 H 1.08996 * 109.47839 * 62.19593 * 4 2 1 29 29 H 1.09000 * 109.47554 * 210.00362 * 6 5 4 30 30 H 1.09006 * 109.47058 * 329.99947 * 6 5 4 31 31 H 0.96993 * 120.00564 * 180.02562 * 10 9 7 32 32 H 1.08002 * 120.04210 * 0.02562 * 16 15 5 33 33 H 1.08000 * 119.96462 * 180.25678 * 17 16 15 34 34 H 1.08000 * 119.92655 * 179.72085 * 18 17 16 35 35 H 1.07994 * 119.96735 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.03661 * 179.97438 * 20 19 18 37 37 H 0.96708 * 117.00044 * 179.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5040 -0.6757 1.2759 6 6 4.1911 0.5410 1.7161 7 6 4.4172 0.4796 3.2049 8 1 4.0829 -0.3800 3.7668 9 6 5.0508 1.5208 3.8494 10 7 5.4574 2.5677 3.1652 11 14 5.3316 1.4444 5.6946 12 1 4.7852 0.1699 6.2261 13 1 6.7878 1.5139 5.9770 14 1 4.6456 2.5882 6.3475 15 6 4.2449 -1.7923 0.8817 16 6 3.6030 -2.9955 0.6172 17 6 4.3380 -4.0963 0.2230 18 6 5.7125 -4.0045 0.1017 19 6 6.3552 -2.8097 0.3693 20 6 5.6257 -1.7037 0.7592 21 6 2.0323 -0.7104 -1.2305 22 8 2.7527 -1.6740 -1.1200 23 8 1.6794 -0.2725 -2.4493 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6449 -0.2307 2.1388 28 1 1.7092 -1.7597 1.2297 29 1 5.1509 0.6211 1.2059 30 1 3.5789 1.4106 1.4771 31 1 5.9034 3.3000 3.6186 32 1 2.5300 -3.0690 0.7158 33 1 3.8392 -5.0310 0.0132 34 1 6.2854 -4.8681 -0.2024 35 1 7.4288 -2.7415 0.2740 36 1 6.1282 -0.7710 0.9684 37 1 2.0267 -0.7603 -3.2087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035759427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:31 Heat of formation + Delta-G solvation = -54.257566 kcal Electronic energy + Delta-G solvation = -20424.094200 eV Core-core repulsion = 17359.660693 eV Total energy + Delta-G solvation = -3064.433507 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.20459 -38.54269 -36.23890 -35.47255 -33.57198 -32.40265 -30.15474 -28.89468 -27.40010 -25.05224 -24.31779 -22.78785 -21.30736 -20.49044 -19.37075 -17.77750 -17.13332 -16.40702 -16.19379 -15.50945 -14.85185 -14.74243 -14.09037 -13.74704 -13.65375 -13.29668 -13.16670 -12.70501 -12.49986 -12.18920 -11.83265 -11.73227 -11.55328 -11.21361 -11.18493 -11.00839 -10.84018 -10.61996 -10.58734 -10.21588 -9.97743 -9.77757 -9.66875 -8.70603 -8.48991 -7.97658 -6.38403 -5.97273 -4.15422 2.34676 2.45143 2.66787 3.25932 3.31354 3.34359 3.39305 4.12591 4.41799 4.78683 5.00781 5.14094 5.21921 5.24856 5.53897 5.70502 5.71024 5.77236 5.81435 5.94637 6.08118 6.12991 6.23388 6.33943 6.48462 6.58740 6.79074 6.81133 7.07664 7.22229 7.34407 7.38292 7.49363 7.78265 7.84343 8.18961 8.23403 8.36442 8.60612 8.95001 9.51576 10.97007 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015848 B = 0.007809 C = 0.005911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.325800 B = 3584.661493 C = 4735.988436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.111 0.889 4 C 0.139 3.861 5 N -0.617 5.617 6 C 0.251 3.749 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.061 3.939 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.254 3.746 16 C -0.157 4.157 17 C -0.092 4.092 18 C -0.201 4.201 19 C -0.087 4.087 20 C -0.192 4.192 21 C 0.470 3.530 22 O -0.482 6.482 23 O -0.526 6.526 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.027 0.973 31 H 0.263 0.737 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.954 -6.376 -8.087 13.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 H 0.128 0.872 4 C 0.014 3.986 5 N -0.324 5.324 6 C 0.131 3.869 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.150 3.850 16 C -0.180 4.180 17 C -0.111 4.111 18 C -0.221 4.221 19 C -0.106 4.106 20 C -0.214 4.214 21 C 0.312 3.688 22 O -0.368 6.368 23 O -0.338 6.338 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.142 0.858 37 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -7.907 -6.073 -7.608 12.542 hybrid contribution 0.520 -0.105 0.453 0.697 sum -7.388 -6.178 -7.155 11.998 Atomic orbital electron populations 1.21694 0.92227 1.02515 1.03305 1.21682 0.97498 1.02251 0.91058 0.87156 1.21206 0.82701 1.00234 0.94452 1.46940 1.02909 1.13535 1.69015 1.19224 0.92703 0.80513 0.94462 1.21635 1.37902 1.03974 0.93176 0.92160 1.24956 0.95410 0.95240 0.98500 1.69933 1.39921 1.07821 1.35825 0.86486 0.77986 0.77975 0.85286 1.19726 1.20923 1.21008 1.17676 0.90648 0.86658 0.90034 1.20347 0.98455 0.91978 1.07172 1.20586 0.93892 0.97098 0.99522 1.20572 0.94518 0.97593 1.09443 1.20700 0.98452 0.92882 0.98562 1.20798 0.92844 0.99781 1.07978 1.23718 0.77781 0.82972 0.84337 1.90936 1.33176 1.26258 1.86415 1.84533 1.71662 1.60502 1.17126 0.90878 0.91478 0.92348 0.89696 0.90627 0.94776 0.95549 0.92773 0.87562 0.88006 0.88125 0.87598 0.85833 0.74021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.11 37.16 0.34 -1.17 16 2 C -0.10 -1.51 2.99 -91.77 -0.27 -1.78 16 3 H 0.11 1.71 7.67 -51.93 -0.40 1.31 16 4 C 0.14 2.36 4.84 -4.04 -0.02 2.34 16 5 N -0.62 -13.04 2.33 -173.12 -0.40 -13.44 16 6 C 0.25 6.20 5.05 -5.19 -0.03 6.17 16 7 C -0.53 -14.29 9.39 -34.44 -0.32 -14.62 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.90 -25.54 13.29 55.43 0.74 -24.81 16 11 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 15 C 0.25 5.42 5.04 -83.78 -0.42 5.00 16 16 C -0.16 -3.03 6.55 -39.38 -0.26 -3.29 16 17 C -0.09 -1.65 10.04 -39.61 -0.40 -2.05 16 18 C -0.20 -3.59 10.04 -39.54 -0.40 -3.99 16 19 C -0.09 -1.67 10.04 -39.61 -0.40 -2.07 16 20 C -0.19 -4.18 9.27 -39.38 -0.36 -4.55 16 21 C 0.47 7.17 7.50 36.00 0.27 7.44 16 22 O -0.48 -8.67 11.27 -18.75 -0.21 -8.88 16 23 O -0.53 -6.52 13.27 -39.26 -0.52 -7.04 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 28 H 0.08 1.21 5.47 -51.93 -0.28 0.92 16 29 H 0.03 0.92 5.95 -51.93 -0.31 0.61 16 30 H 0.03 0.67 7.59 -51.93 -0.39 0.28 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.11 1.91 5.51 -52.49 -0.29 1.62 16 33 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.10 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.12 2.90 6.01 -52.49 -0.32 2.58 16 37 H 0.40 3.42 9.10 45.56 0.41 3.84 16 LS Contribution 306.43 15.07 4.62 4.62 Total: -1.00 -31.17 306.43 -7.25 -38.42 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.08 Total: 5.85 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.37 Total: -10.99 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.33 Total: -38.25 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.73 Total: -15.92 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.17 -7.25 -38.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035759427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.841 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds