Wall clock time and date at job start Mon Mar 30 2020 06:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47035 * 2 1 4 4 C 1.52994 * 109.46739 * 120.00572 * 2 1 3 5 5 N 1.46502 * 109.46886 * 182.19639 * 4 2 1 6 6 C 1.46496 * 120.00480 * 78.94100 * 5 4 2 7 7 C 1.50704 * 109.47428 * 90.00076 * 6 5 4 8 8 H 1.08001 * 119.99394 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00146 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00277 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00050 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46931 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47286 * 119.99832 * 11 9 7 14 14 H 1.48501 * 109.47115 * 240.00019 * 11 9 7 15 15 C 1.39683 * 119.99686 * 258.94429 * 5 4 2 16 16 C 1.38908 * 120.07232 * 352.31748 * 15 5 4 17 17 C 1.38108 * 119.92381 * 179.76739 * 16 15 5 18 18 C 1.38287 * 120.07155 * 0.51795 * 17 16 15 19 19 C 1.38290 * 120.15260 * 359.73537 * 18 17 16 20 20 C 1.38108 * 120.07154 * 0.02562 * 19 18 17 21 21 C 1.50696 * 109.46862 * 240.00193 * 2 1 3 22 22 O 1.20823 * 120.00354 * 238.25436 * 21 2 1 23 23 O 1.34232 * 119.99922 * 58.25739 * 21 2 1 24 24 H 1.09004 * 109.47021 * 300.00015 * 1 2 3 25 25 H 1.09003 * 109.47098 * 59.99381 * 1 2 3 26 26 H 1.08997 * 109.47368 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47043 * 302.18684 * 4 2 1 28 28 H 1.08996 * 109.47839 * 62.19593 * 4 2 1 29 29 H 1.09000 * 109.47554 * 210.00362 * 6 5 4 30 30 H 1.09006 * 109.47058 * 329.99947 * 6 5 4 31 31 H 0.96993 * 120.00564 * 180.02562 * 10 9 7 32 32 H 1.08002 * 120.04210 * 0.02562 * 16 15 5 33 33 H 1.08000 * 119.96462 * 180.25678 * 17 16 15 34 34 H 1.08000 * 119.92655 * 179.72085 * 18 17 16 35 35 H 1.07994 * 119.96735 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.03661 * 179.97438 * 20 19 18 37 37 H 0.96708 * 117.00044 * 179.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5040 -0.6757 1.2759 6 6 4.1911 0.5410 1.7161 7 6 4.4172 0.4796 3.2049 8 1 4.0829 -0.3800 3.7668 9 6 5.0508 1.5208 3.8494 10 7 5.4574 2.5677 3.1652 11 14 5.3316 1.4444 5.6946 12 1 4.7852 0.1699 6.2261 13 1 6.7878 1.5139 5.9770 14 1 4.6456 2.5882 6.3475 15 6 4.2449 -1.7923 0.8817 16 6 3.6030 -2.9955 0.6172 17 6 4.3380 -4.0963 0.2230 18 6 5.7125 -4.0045 0.1017 19 6 6.3552 -2.8097 0.3693 20 6 5.6257 -1.7037 0.7592 21 6 2.0323 -0.7104 -1.2305 22 8 2.7527 -1.6740 -1.1200 23 8 1.6794 -0.2725 -2.4493 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6449 -0.2307 2.1388 28 1 1.7092 -1.7597 1.2297 29 1 5.1509 0.6211 1.2059 30 1 3.5789 1.4106 1.4771 31 1 5.9034 3.3000 3.6186 32 1 2.5300 -3.0690 0.7158 33 1 3.8392 -5.0310 0.0132 34 1 6.2854 -4.8681 -0.2024 35 1 7.4288 -2.7415 0.2740 36 1 6.1282 -0.7710 0.9684 37 1 2.0267 -0.7603 -3.2087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035759427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:30 Heat of formation + Delta-G solvation = -72.810053 kcal Electronic energy + Delta-G solvation = -20424.898696 eV Core-core repulsion = 17359.660693 eV Total energy + Delta-G solvation = -3065.238003 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.44283 -40.00261 -37.58560 -36.76073 -35.17778 -34.13227 -31.68217 -30.53419 -29.03487 -26.54924 -25.56471 -24.55148 -22.82339 -21.83738 -20.79914 -18.98317 -18.59038 -18.47697 -17.46805 -16.93651 -16.55700 -16.09679 -15.77690 -15.17918 -15.08325 -14.56775 -14.51474 -14.26225 -14.14760 -13.59928 -13.21445 -13.05102 -12.89278 -12.85079 -12.72099 -12.52672 -12.33752 -12.26350 -12.07754 -11.93518 -11.68481 -11.33009 -11.16010 -10.61779 -10.34601 -9.48107 -8.33239 -7.73610 -6.34294 0.82683 1.01534 1.36770 1.39158 1.42412 1.51022 2.23723 2.35964 2.63627 3.08698 3.30239 3.79914 3.95442 4.15922 4.25497 4.33117 4.43856 4.56211 4.61878 4.81326 4.86753 4.91352 4.92620 4.99751 5.03651 5.18722 5.24006 5.31120 5.41775 5.64776 5.75596 5.77667 5.85492 5.95913 6.11518 6.30432 6.58128 6.89084 7.01700 7.15694 7.37985 8.85618 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015848 B = 0.007809 C = 0.005911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.325800 B = 3584.661493 C = 4735.988436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 H 0.095 0.905 4 C 0.136 3.864 5 N -0.624 5.624 6 C 0.270 3.730 7 C -0.538 4.538 8 H 0.050 0.950 9 C 0.013 3.987 10 N -0.927 5.927 11 Si 0.960 3.040 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.273 1.273 15 C 0.234 3.766 16 C -0.157 4.157 17 C -0.091 4.091 18 C -0.196 4.196 19 C -0.093 4.093 20 C -0.227 4.227 21 C 0.473 3.527 22 O -0.512 6.512 23 O -0.518 6.518 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.003 0.997 30 H 0.013 0.987 31 H 0.266 0.734 32 H 0.119 0.881 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.144 -8.087 -8.191 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.122 4.122 3 H 0.113 0.887 4 C 0.012 3.988 5 N -0.332 5.332 6 C 0.149 3.851 7 C -0.577 4.577 8 H 0.068 0.932 9 C -0.186 4.186 10 N -0.567 5.567 11 Si 0.785 3.215 12 H -0.195 1.195 13 H -0.207 1.207 14 H -0.198 1.198 15 C 0.131 3.869 16 C -0.179 4.179 17 C -0.110 4.110 18 C -0.216 4.216 19 C -0.112 4.112 20 C -0.250 4.250 21 C 0.316 3.684 22 O -0.400 6.400 23 O -0.331 6.331 24 H 0.102 0.898 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.021 0.979 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.137 0.863 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.141 0.859 36 H 0.109 0.891 37 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -9.125 -7.796 -7.747 14.285 hybrid contribution 0.903 0.379 0.376 1.049 sum -8.222 -7.417 -7.371 13.302 Atomic orbital electron populations 1.21677 0.88984 1.03707 1.04422 1.21585 1.00026 1.00671 0.89889 0.88720 1.21390 0.80291 1.01376 0.95706 1.46822 1.04451 1.12457 1.69519 1.18705 0.91401 0.81889 0.93135 1.21831 1.37926 1.03612 0.94299 0.93164 1.25749 0.95073 0.94864 1.02935 1.70037 1.40548 1.08468 1.37616 0.85478 0.77841 0.78207 0.79960 1.19477 1.20698 1.19847 1.17906 0.90606 0.87461 0.90923 1.20522 0.99200 0.91447 1.06736 1.21034 0.94091 0.97898 0.97947 1.20964 0.94952 0.97820 1.07893 1.20954 0.99430 0.92751 0.98068 1.20776 0.93722 0.99658 1.10830 1.23759 0.77079 0.82426 0.85162 1.90909 1.34432 1.27722 1.86965 1.84481 1.71247 1.60423 1.16993 0.89816 0.90341 0.91075 0.90000 0.89284 0.97878 0.96903 0.92507 0.86324 0.84544 0.84769 0.85886 0.89139 0.71895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.11 71.98 0.66 -1.89 16 2 C -0.10 -2.87 2.99 -11.54 -0.03 -2.91 16 3 H 0.09 3.00 7.67 -2.39 -0.02 2.99 16 4 C 0.14 4.62 4.84 86.38 0.42 5.04 16 5 N -0.62 -27.25 2.33 -701.63 -1.63 -28.89 16 6 C 0.27 14.09 5.05 85.64 0.43 14.52 16 7 C -0.54 -30.11 9.39 25.60 0.24 -29.87 16 8 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 9 C 0.01 0.72 5.46 84.65 0.46 1.18 16 10 N -0.93 -54.28 13.29 21.44 0.28 -53.99 16 11 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 15 C 0.23 10.19 5.04 38.21 0.19 10.38 16 16 C -0.16 -5.86 6.55 22.40 0.15 -5.71 16 17 C -0.09 -3.01 10.04 22.25 0.22 -2.79 16 18 C -0.20 -6.52 10.04 22.29 0.22 -6.30 16 19 C -0.09 -3.56 10.04 22.25 0.22 -3.33 16 20 C -0.23 -10.31 9.27 22.40 0.21 -10.11 16 21 C 0.47 14.01 7.50 71.23 0.53 14.54 16 22 O -0.51 -18.03 11.27 21.97 0.25 -17.78 16 23 O -0.52 -11.98 13.27 -51.44 -0.68 -12.66 16 24 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16 28 H 0.09 2.75 5.47 -2.39 -0.01 2.74 16 29 H 0.00 0.19 5.95 -2.39 -0.01 0.18 16 30 H 0.01 0.70 7.59 -2.38 -0.02 0.68 16 31 H 0.27 14.66 8.31 -92.71 -0.77 13.88 16 32 H 0.12 4.05 5.51 -2.91 -0.02 4.03 16 33 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 34 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 35 H 0.12 4.10 8.06 -2.91 -0.02 4.07 16 36 H 0.09 4.61 6.01 -2.91 -0.02 4.59 16 37 H 0.42 6.36 9.10 -74.05 -0.67 5.69 16 Total: -1.00 -68.36 306.43 4.58 -63.79 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.41 Total: 20.59 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 3.93 Total: -17.24 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -1.35 Total: -82.88 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.43 Total: -30.45 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -68.36 4.58 -63.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035759427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.024 kcal (2) G-P(sol) polarization free energy of solvation -68.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds