Wall clock time and date at job start Mon Mar 30 2020 06:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47024 * 2 1 4 4 C 1.52995 * 109.47370 * 239.99525 * 2 1 3 5 5 N 1.46501 * 109.46933 * 62.86061 * 4 2 1 6 6 C 1.46497 * 120.00149 * 84.06946 * 5 4 2 7 7 C 1.50696 * 109.47431 * 89.81559 * 6 5 4 8 8 H 1.07996 * 120.00237 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00176 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99863 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99944 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47147 * 60.00602 * 11 9 7 13 13 H 1.48506 * 109.46891 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47149 * 300.00007 * 11 9 7 15 15 C 1.39679 * 119.99920 * 264.06172 * 5 4 2 16 16 C 1.38912 * 120.07454 * 359.72865 * 15 5 4 17 17 C 1.38101 * 119.92218 * 179.76485 * 16 15 5 18 18 C 1.38280 * 120.07660 * 0.50636 * 17 16 15 19 19 C 1.38286 * 120.15259 * 359.74736 * 18 17 16 20 20 C 1.38103 * 120.07218 * 359.97438 * 19 18 17 21 21 C 1.50699 * 109.46903 * 119.99499 * 2 1 3 22 22 O 1.20826 * 119.99952 * 35.63916 * 21 2 1 23 23 O 1.34230 * 120.00101 * 215.64098 * 21 2 1 24 24 H 1.08998 * 109.47444 * 300.00715 * 1 2 3 25 25 H 1.09001 * 109.47024 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46971 * 60.01034 * 1 2 3 27 27 H 1.09001 * 109.47407 * 182.85905 * 4 2 1 28 28 H 1.09001 * 109.47583 * 302.85824 * 4 2 1 29 29 H 1.09004 * 109.47300 * 209.82133 * 6 5 4 30 30 H 1.09000 * 109.47067 * 329.81775 * 6 5 4 31 31 H 0.97002 * 120.00027 * 179.97438 * 10 9 7 32 32 H 1.08003 * 120.03484 * 359.97438 * 16 15 5 33 33 H 1.08004 * 119.96044 * 180.25294 * 17 16 15 34 34 H 1.08007 * 119.92901 * 179.72361 * 18 17 16 35 35 H 1.07999 * 119.96752 * 179.97438 * 19 18 17 36 36 H 1.07998 * 120.04231 * 179.97438 * 20 19 18 37 37 H 0.96697 * 116.99733 * 180.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6089 0.0079 -2.4443 6 6 2.3920 1.1468 -2.9299 7 6 3.4334 0.6612 -3.9049 8 1 3.5046 -0.3905 -4.1398 9 6 4.2947 1.5598 -4.4980 10 7 4.2077 2.8406 -4.2124 11 14 5.5851 0.9579 -5.7072 12 1 4.9167 0.2917 -6.8537 13 1 6.3790 2.1125 -6.1993 14 1 6.4860 -0.0086 -5.0294 15 6 0.4511 -0.3829 -3.1210 16 6 -0.2895 -1.4662 -2.6653 17 6 -1.4363 -1.8468 -3.3340 18 6 -1.8419 -1.1575 -4.4620 19 6 -1.1042 -0.0819 -4.9214 20 6 0.0405 0.3077 -4.2543 21 6 2.0323 -0.7103 1.2305 22 8 1.4319 -1.6648 1.6645 23 8 3.1467 -0.2826 1.8445 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 -0.8901 27 1 3.1289 -0.7659 -1.2239 28 1 1.6356 -1.7332 -1.2751 29 1 1.7310 1.8564 -3.4276 30 1 2.8823 1.6358 -2.0882 31 1 4.8139 3.4727 -4.6294 32 1 0.0295 -2.0080 -1.7872 33 1 -2.0148 -2.6865 -2.9778 34 1 -2.7368 -1.4600 -4.9856 35 1 -1.4235 0.4542 -5.8030 36 1 0.6165 1.1476 -4.6138 37 1 3.4299 -0.7704 2.6299 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035759429.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:33 Heat of formation + Delta-G solvation = -65.931646 kcal Electronic energy + Delta-G solvation = -20004.643230 eV Core-core repulsion = 16939.703497 eV Total energy + Delta-G solvation = -3064.939733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.34848 -38.97732 -36.38833 -35.91068 -33.48739 -32.28173 -30.29694 -29.16698 -27.44337 -25.67303 -24.24910 -22.82219 -21.53029 -20.40364 -19.43577 -18.20064 -17.17866 -16.60804 -16.22276 -15.62483 -15.09531 -14.73809 -14.37355 -14.18299 -13.74803 -13.25606 -13.12066 -12.77200 -12.73240 -12.38937 -11.97836 -11.74339 -11.51621 -11.34715 -11.24780 -10.99731 -10.85374 -10.78938 -10.62447 -10.43803 -10.28029 -9.94878 -9.78340 -8.96025 -8.53186 -8.30076 -6.58040 -6.07533 -4.20469 2.06119 2.18626 2.32877 3.10357 3.26442 3.31068 3.34432 4.04851 4.37700 4.53586 4.91497 5.13105 5.18911 5.23342 5.49165 5.52953 5.60372 5.70659 5.80462 5.91593 6.02961 6.06928 6.21992 6.29386 6.33798 6.35759 6.56225 6.60472 6.90943 7.04094 7.14442 7.21451 7.32007 7.56428 7.77623 7.97254 8.10397 8.18104 8.39018 8.87741 9.46513 10.92470 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.008095 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.009631 B = 3458.054732 C = 5218.877424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 H 0.106 0.894 4 C 0.139 3.861 5 N -0.606 5.606 6 C 0.250 3.750 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.236 3.764 16 C -0.216 4.216 17 C -0.080 4.080 18 C -0.200 4.200 19 C -0.078 4.078 20 C -0.184 4.184 21 C 0.489 3.511 22 O -0.521 6.521 23 O -0.513 6.513 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.032 0.968 31 H 0.265 0.735 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.689 -5.055 6.765 10.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 H 0.125 0.875 4 C 0.014 3.986 5 N -0.312 5.312 6 C 0.131 3.869 7 C -0.572 4.572 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.131 3.869 16 C -0.239 4.239 17 C -0.099 4.099 18 C -0.221 4.221 19 C -0.097 4.097 20 C -0.207 4.207 21 C 0.331 3.669 22 O -0.409 6.409 23 O -0.324 6.324 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.150 0.850 37 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -6.690 -4.824 6.580 10.551 hybrid contribution 1.088 -0.547 -0.122 1.224 sum -5.601 -5.371 6.458 10.096 Atomic orbital electron populations 1.21791 0.91550 1.03238 1.02575 1.21641 0.98238 1.02207 0.90448 0.87538 1.21096 1.00182 0.94714 0.82648 1.47017 1.24044 1.34416 1.25754 1.19302 0.90066 0.82820 0.94761 1.21525 1.16050 0.94324 1.25311 0.92254 1.24941 0.97489 0.94760 0.96743 1.69911 1.38357 1.01469 1.43532 0.86593 0.81413 0.78209 0.81459 1.20140 1.21201 1.20245 1.17899 0.86032 0.91967 0.90989 1.20692 0.98815 1.00456 1.03953 1.20691 0.95682 0.98400 0.95095 1.20688 1.01959 0.99811 0.99615 1.20832 0.94361 0.96148 0.98385 1.20921 0.99031 1.03557 0.97150 1.23637 0.77042 0.81774 0.84456 1.90677 1.57208 1.27666 1.65366 1.84638 1.43045 1.60135 1.44568 0.92971 0.91368 0.90260 0.89971 0.90613 0.94452 0.95041 0.92567 0.86648 0.87356 0.87632 0.87080 0.84997 0.73735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 7.48 37.16 0.28 -1.63 16 2 C -0.10 -1.56 3.03 -91.77 -0.28 -1.84 16 3 H 0.11 1.65 8.10 -51.93 -0.42 1.23 16 4 C 0.14 2.36 4.89 -4.04 -0.02 2.34 16 5 N -0.61 -11.94 2.30 -173.12 -0.40 -12.34 16 6 C 0.25 5.87 4.94 -5.20 -0.03 5.85 16 7 C -0.53 -13.99 9.39 -34.44 -0.32 -14.31 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 11 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 C 0.24 4.49 5.37 -83.78 -0.45 4.04 16 16 C -0.22 -3.63 7.72 -39.38 -0.30 -3.93 16 17 C -0.08 -1.23 10.04 -39.62 -0.40 -1.63 16 18 C -0.20 -3.09 10.04 -39.55 -0.40 -3.49 16 19 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 20 C -0.18 -3.57 9.21 -39.38 -0.36 -3.94 16 21 C 0.49 7.01 7.32 36.01 0.26 7.27 16 22 O -0.52 -8.46 17.04 -18.75 -0.32 -8.78 16 23 O -0.51 -6.22 13.42 -39.26 -0.53 -6.75 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.97 6.76 -51.93 -0.35 0.62 16 26 H 0.08 1.22 6.42 -51.93 -0.33 0.89 16 27 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 28 H 0.08 1.22 5.88 -51.93 -0.31 0.91 16 29 H 0.04 0.93 6.19 -51.93 -0.32 0.61 16 30 H 0.03 0.78 8.03 -51.93 -0.42 0.36 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.12 1.82 4.92 -52.48 -0.26 1.56 16 33 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 34 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.13 2.81 6.14 -52.49 -0.32 2.49 16 37 H 0.40 2.95 9.10 45.56 0.41 3.36 16 LS Contribution 309.93 15.07 4.67 4.67 Total: -1.00 -29.47 309.93 -7.34 -36.81 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -3.97 Total: 6.04 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -2.51 Total: -11.39 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.34 Total: -36.50 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.85 Total: -15.53 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.47 -7.34 -36.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035759429.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.122 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds