Wall clock time and date at job start Mon Mar 30 2020 06:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47024 * 2 1 4 4 C 1.52995 * 109.47370 * 239.99525 * 2 1 3 5 5 N 1.46501 * 109.46933 * 62.86061 * 4 2 1 6 6 C 1.46497 * 120.00149 * 84.06946 * 5 4 2 7 7 C 1.50696 * 109.47431 * 89.81559 * 6 5 4 8 8 H 1.07996 * 120.00237 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00176 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99863 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99944 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47147 * 60.00602 * 11 9 7 13 13 H 1.48506 * 109.46891 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47149 * 300.00007 * 11 9 7 15 15 C 1.39679 * 119.99920 * 264.06172 * 5 4 2 16 16 C 1.38912 * 120.07454 * 359.72865 * 15 5 4 17 17 C 1.38101 * 119.92218 * 179.76485 * 16 15 5 18 18 C 1.38280 * 120.07660 * 0.50636 * 17 16 15 19 19 C 1.38286 * 120.15259 * 359.74736 * 18 17 16 20 20 C 1.38103 * 120.07218 * 359.97438 * 19 18 17 21 21 C 1.50699 * 109.46903 * 119.99499 * 2 1 3 22 22 O 1.20826 * 119.99952 * 35.63916 * 21 2 1 23 23 O 1.34230 * 120.00101 * 215.64098 * 21 2 1 24 24 H 1.08998 * 109.47444 * 300.00715 * 1 2 3 25 25 H 1.09001 * 109.47024 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46971 * 60.01034 * 1 2 3 27 27 H 1.09001 * 109.47407 * 182.85905 * 4 2 1 28 28 H 1.09001 * 109.47583 * 302.85824 * 4 2 1 29 29 H 1.09004 * 109.47300 * 209.82133 * 6 5 4 30 30 H 1.09000 * 109.47067 * 329.81775 * 6 5 4 31 31 H 0.97002 * 120.00027 * 179.97438 * 10 9 7 32 32 H 1.08003 * 120.03484 * 359.97438 * 16 15 5 33 33 H 1.08004 * 119.96044 * 180.25294 * 17 16 15 34 34 H 1.08007 * 119.92901 * 179.72361 * 18 17 16 35 35 H 1.07999 * 119.96752 * 179.97438 * 19 18 17 36 36 H 1.07998 * 120.04231 * 179.97438 * 20 19 18 37 37 H 0.96697 * 116.99733 * 180.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6089 0.0079 -2.4443 6 6 2.3920 1.1468 -2.9299 7 6 3.4334 0.6612 -3.9049 8 1 3.5046 -0.3905 -4.1398 9 6 4.2947 1.5598 -4.4980 10 7 4.2077 2.8406 -4.2124 11 14 5.5851 0.9579 -5.7072 12 1 4.9167 0.2917 -6.8537 13 1 6.3790 2.1125 -6.1993 14 1 6.4860 -0.0086 -5.0294 15 6 0.4511 -0.3829 -3.1210 16 6 -0.2895 -1.4662 -2.6653 17 6 -1.4363 -1.8468 -3.3340 18 6 -1.8419 -1.1575 -4.4620 19 6 -1.1042 -0.0819 -4.9214 20 6 0.0405 0.3077 -4.2543 21 6 2.0323 -0.7103 1.2305 22 8 1.4319 -1.6648 1.6645 23 8 3.1467 -0.2826 1.8445 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 -0.8901 27 1 3.1289 -0.7659 -1.2239 28 1 1.6356 -1.7332 -1.2751 29 1 1.7310 1.8564 -3.4276 30 1 2.8823 1.6358 -2.0882 31 1 4.8139 3.4727 -4.6294 32 1 0.0295 -2.0080 -1.7872 33 1 -2.0148 -2.6865 -2.9778 34 1 -2.7368 -1.4600 -4.9856 35 1 -1.4235 0.4542 -5.8030 36 1 0.6165 1.1476 -4.6138 37 1 3.4299 -0.7704 2.6299 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035759429.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:33 Heat of formation + Delta-G solvation = -82.525053 kcal Electronic energy + Delta-G solvation = -20005.362774 eV Core-core repulsion = 16939.703497 eV Total energy + Delta-G solvation = -3065.659277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.52240 -40.33697 -37.67411 -37.10578 -35.21131 -33.91053 -31.65358 -30.65268 -29.08453 -27.05591 -25.71595 -24.42961 -22.88126 -21.72379 -20.77319 -19.35852 -18.60420 -18.45560 -17.53546 -16.96321 -16.66675 -16.10127 -15.94134 -15.54116 -15.06962 -14.60764 -14.54842 -14.20307 -14.07192 -14.02847 -13.33624 -13.12995 -13.02173 -12.83055 -12.61318 -12.54236 -12.43420 -12.29784 -12.06292 -11.99775 -11.74178 -11.60730 -11.28359 -10.60631 -10.51418 -9.63493 -8.34875 -7.85172 -6.33055 0.72463 0.90308 1.11935 1.39384 1.40297 1.48316 2.00516 2.37442 2.64915 3.10040 3.19496 3.67108 3.87309 4.01424 4.24781 4.30233 4.39677 4.44764 4.55012 4.71542 4.78170 4.80516 4.83716 4.97385 5.01199 5.15055 5.18617 5.25310 5.36810 5.56890 5.61466 5.72783 5.79883 5.91914 6.11092 6.23571 6.50390 6.83538 6.91928 6.98521 7.38237 8.85871 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.008095 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.009631 B = 3458.054732 C = 5218.877424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.100 4.100 3 H 0.097 0.903 4 C 0.142 3.858 5 N -0.614 5.614 6 C 0.269 3.731 7 C -0.541 4.541 8 H 0.049 0.951 9 C 0.016 3.984 10 N -0.924 5.924 11 Si 0.955 3.045 12 H -0.275 1.275 13 H -0.281 1.281 14 H -0.271 1.271 15 C 0.215 3.785 16 C -0.214 4.214 17 C -0.076 4.076 18 C -0.192 4.192 19 C -0.082 4.082 20 C -0.215 4.215 21 C 0.500 3.500 22 O -0.538 6.538 23 O -0.512 6.512 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.266 0.734 32 H 0.127 0.873 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.099 0.901 37 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 -6.844 7.002 12.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.121 4.121 3 H 0.115 0.885 4 C 0.017 3.983 5 N -0.321 5.321 6 C 0.148 3.852 7 C -0.580 4.580 8 H 0.067 0.933 9 C -0.184 4.184 10 N -0.563 5.563 11 Si 0.781 3.219 12 H -0.200 1.200 13 H -0.206 1.206 14 H -0.196 1.196 15 C 0.112 3.888 16 C -0.236 4.236 17 C -0.094 4.094 18 C -0.212 4.212 19 C -0.100 4.100 20 C -0.237 4.237 21 C 0.342 3.658 22 O -0.428 6.428 23 O -0.325 6.325 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.145 0.855 33 H 0.162 0.838 34 H 0.157 0.843 35 H 0.146 0.854 36 H 0.117 0.883 37 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -7.688 -6.635 6.839 12.244 hybrid contribution 1.327 -0.019 -0.182 1.340 sum -6.361 -6.654 6.657 11.360 Atomic orbital electron populations 1.21693 0.90729 1.03331 1.02514 1.21492 0.98935 1.01490 0.90212 0.88470 1.21115 0.99486 0.95190 0.82522 1.46773 1.24398 1.34003 1.26947 1.18773 0.89316 0.83767 0.93328 1.21764 1.16689 0.93794 1.25785 0.93266 1.25690 0.99420 0.94887 0.98354 1.70013 1.39273 1.02415 1.44643 0.85649 0.79081 0.77883 0.79305 1.20016 1.20573 1.19568 1.18102 0.86261 0.93128 0.91293 1.20854 0.98988 0.99467 1.04299 1.21131 0.94960 0.98858 0.94457 1.21086 1.02349 0.98450 0.99361 1.21078 0.93481 0.96790 0.98698 1.20853 1.00545 1.03725 0.98602 1.23263 0.77266 0.81149 0.84086 1.90674 1.57913 1.28338 1.65885 1.84583 1.41915 1.60364 1.45646 0.91562 0.91074 0.91733 0.91334 0.89435 0.96684 0.96785 0.92470 0.85548 0.83844 0.84321 0.85369 0.88318 0.71072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 7.48 71.98 0.54 -2.92 16 2 C -0.10 -2.98 3.03 -11.54 -0.03 -3.02 16 3 H 0.10 3.07 8.10 -2.39 -0.02 3.05 16 4 C 0.14 4.85 4.89 86.38 0.42 5.27 16 5 N -0.61 -24.96 2.30 -701.64 -1.61 -26.58 16 6 C 0.27 13.34 4.94 85.63 0.42 13.77 16 7 C -0.54 -29.39 9.39 25.60 0.24 -29.15 16 8 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 9 C 0.02 0.88 5.46 84.66 0.46 1.34 16 10 N -0.92 -52.88 13.29 21.45 0.28 -52.59 16 11 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 13 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 C 0.22 8.28 5.37 38.21 0.21 8.49 16 16 C -0.21 -6.81 7.72 22.40 0.17 -6.64 16 17 C -0.08 -2.07 10.04 22.25 0.22 -1.85 16 18 C -0.19 -5.32 10.04 22.29 0.22 -5.10 16 19 C -0.08 -2.66 10.04 22.25 0.22 -2.44 16 20 C -0.21 -8.57 9.21 22.40 0.21 -8.36 16 21 C 0.50 13.71 7.32 71.24 0.52 14.23 16 22 O -0.54 -16.54 17.04 21.96 0.37 -16.17 16 23 O -0.51 -11.64 13.42 -51.41 -0.69 -12.33 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 1.91 6.76 -2.39 -0.02 1.89 16 26 H 0.06 1.98 6.42 -2.39 -0.02 1.96 16 27 H 0.07 2.49 8.12 -2.39 -0.02 2.47 16 28 H 0.09 2.76 5.88 -2.39 -0.01 2.74 16 29 H 0.02 0.81 6.19 -2.39 -0.01 0.80 16 30 H 0.01 0.74 8.03 -2.39 -0.02 0.72 16 31 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 32 H 0.13 3.71 4.92 -2.91 -0.01 3.69 16 33 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 34 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 36 H 0.10 4.53 6.14 -2.91 -0.02 4.51 16 37 H 0.43 5.32 9.10 -74.06 -0.67 4.64 16 Total: -1.00 -63.89 309.93 4.62 -59.27 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.41 Total: 19.36 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 3.83 Total: -16.37 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -1.33 Total: -79.17 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.32 Total: -28.50 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -63.89 4.62 -59.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035759429.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.257 kcal (2) G-P(sol) polarization free energy of solvation -63.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds