Wall clock time and date at job start Mon Mar 30 2020 06:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47380 * 2 1 4 4 H 1.09001 * 109.46900 * 304.99753 * 3 2 1 5 5 C 1.52997 * 109.47351 * 64.99687 * 3 2 1 6 6 C 1.50695 * 109.47395 * 185.00088 * 3 2 1 7 7 O 1.21296 * 120.00069 * 359.97438 * 6 3 2 8 8 N 1.34772 * 120.00374 * 179.97438 * 6 3 2 9 9 C 1.39997 * 120.00238 * 175.61883 * 8 6 3 10 10 C 1.38729 * 120.10003 * 34.59018 * 9 8 6 11 11 C 1.38181 * 119.99704 * 180.02562 * 10 9 8 12 12 C 1.38354 * 120.20619 * 359.97438 * 11 10 9 13 13 C 1.38164 * 120.20054 * 359.97438 * 12 11 10 14 14 C 1.38748 * 119.99900 * 0.02562 * 13 12 11 15 15 O 1.35774 * 120.09901 * 180.02562 * 14 13 12 16 16 C 1.34809 * 117.00028 * 354.56282 * 15 14 13 17 17 H 1.07995 * 119.99776 * 5.04120 * 16 15 14 18 18 C 1.38644 * 119.99858 * 185.04580 * 16 15 14 19 19 N 1.31563 * 119.99898 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99858 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47112 * 59.99712 * 20 18 16 22 22 H 1.48497 * 109.46982 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47109 * 299.99813 * 20 18 16 24 24 H 1.08992 * 109.47598 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47569 * 300.00533 * 1 2 3 26 26 H 1.09009 * 109.47251 * 59.99927 * 1 2 3 27 27 H 1.08999 * 109.47477 * 239.99980 * 2 1 3 28 28 H 1.08999 * 109.47402 * 120.00004 * 2 1 3 29 29 H 1.09001 * 109.47065 * 60.00167 * 5 3 2 30 30 H 1.09002 * 109.47326 * 180.02562 * 5 3 2 31 31 H 1.09002 * 109.47158 * 300.00516 * 5 3 2 32 32 H 0.97004 * 120.00001 * 355.62790 * 8 6 3 33 33 H 1.08003 * 119.99987 * 359.97438 * 10 9 8 34 34 H 1.07996 * 119.89919 * 179.97438 * 11 10 9 35 35 H 1.07996 * 119.90002 * 180.28489 * 12 11 10 36 36 H 1.07999 * 119.99929 * 180.02562 * 13 12 11 37 37 H 0.97009 * 119.99921 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5418 1.4443 -0.1238 7 8 4.1451 0.3950 -0.2038 8 7 4.2149 2.6117 -0.1458 9 6 5.6146 2.6125 -0.1683 10 6 6.3000 1.6183 -0.8513 11 6 7.6817 1.6208 -0.8717 12 6 8.3858 2.6130 -0.2128 13 6 7.7116 3.6078 0.4690 14 6 6.3244 3.6134 0.4950 15 8 5.6598 4.5902 1.1640 16 6 6.4044 5.4600 1.8757 17 1 7.4823 5.4113 1.8303 18 6 5.7863 6.4170 2.6659 19 7 4.4732 6.4765 2.7208 20 14 6.8180 7.6218 3.6525 21 1 7.6708 8.4141 2.7305 22 1 5.9242 8.5359 4.4079 23 1 7.6792 6.8734 4.6030 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.0698 1.5876 2.1491 30 1 1.9982 3.1544 1.3071 31 1 0.5489 2.1253 1.3968 32 1 3.7293 3.4515 -0.1459 33 1 5.7537 0.8420 -1.3664 34 1 8.2137 0.8459 -1.4035 35 1 9.4655 2.6128 -0.2358 36 1 8.2645 4.3809 0.9818 37 1 4.0407 7.1463 3.2734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036682184.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:32 Heat of formation + Delta-G solvation = -52.103692 kcal Electronic energy + Delta-G solvation = -19767.006830 eV Core-core repulsion = 16702.666722 eV Total energy + Delta-G solvation = -3064.340108 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.12999 -38.65091 -36.41363 -35.21729 -34.11785 -32.30123 -30.08716 -29.09553 -28.17967 -25.41271 -25.12333 -22.75597 -21.56154 -20.77854 -19.36219 -18.01855 -17.61835 -16.59987 -15.95960 -15.28493 -14.74043 -14.56384 -14.45618 -13.87591 -13.77610 -13.53808 -13.31688 -13.12932 -12.61406 -12.38346 -12.03605 -11.73913 -11.61892 -11.51807 -11.34102 -11.09829 -10.93885 -10.78277 -10.70928 -10.60147 -10.52029 -9.69136 -9.60779 -9.07839 -8.86324 -7.74818 -7.01836 -6.50443 -4.07642 2.06300 2.35675 3.07959 3.10528 3.12012 3.14012 3.65027 3.92564 4.58071 4.83761 4.94252 5.02377 5.03912 5.19802 5.40975 5.45675 5.54227 5.67794 5.73852 5.84233 5.90891 6.02330 6.04494 6.08004 6.14609 6.26284 6.38507 6.45049 6.48587 6.75984 6.91955 7.07859 7.20537 7.33575 7.38955 7.81384 7.93315 8.04132 8.65949 8.96263 9.62195 10.67497 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017212 B = 0.006309 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.369856 B = 4437.254276 C = 5947.384924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 C -0.108 4.108 4 H 0.095 0.905 5 C -0.147 4.147 6 C 0.512 3.488 7 O -0.540 6.540 8 N -0.649 5.649 9 C 0.065 3.935 10 C -0.077 4.077 11 C -0.197 4.197 12 C -0.085 4.085 13 C -0.223 4.223 14 C 0.135 3.865 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.091 0.909 18 C 0.041 3.959 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.413 0.587 33 H 0.130 0.870 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 -6.260 -4.516 8.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.142 4.142 3 C -0.129 4.129 4 H 0.113 0.887 5 C -0.205 4.205 6 C 0.300 3.700 7 O -0.417 6.417 8 N -0.293 5.293 9 C -0.029 4.029 10 C -0.097 4.097 11 C -0.217 4.217 12 C -0.104 4.104 13 C -0.243 4.243 14 C 0.081 3.919 15 O -0.083 6.083 16 C -0.466 4.466 17 H 0.109 0.891 18 C -0.163 4.163 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.249 0.751 33 H 0.148 0.852 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.148 0.852 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.172 -6.793 -4.407 9.109 hybrid contribution 0.448 1.131 0.591 1.353 sum -3.723 -5.661 -3.816 7.777 Atomic orbital electron populations 1.21842 0.95710 1.01566 1.01902 1.21322 0.95082 0.94407 1.03343 1.21317 0.91686 0.99137 1.00788 0.88731 1.21843 1.01768 1.01339 0.95535 1.20719 0.89990 0.83432 0.75897 1.90631 1.70025 1.31498 1.49561 1.43191 1.05045 1.09385 1.71675 1.16927 0.81958 0.98816 1.05234 1.20828 0.94011 0.97510 0.97345 1.20545 0.93540 1.01238 1.06363 1.20786 0.98632 0.94236 0.96708 1.20996 0.93361 1.02642 1.07294 1.19162 0.90881 0.89475 0.92392 1.83890 1.34673 1.34569 1.55199 1.21243 0.91006 1.10133 1.24213 0.89145 1.25231 0.96228 0.97879 0.96987 1.70001 1.07919 1.34077 1.37980 0.85790 0.78890 0.79424 0.79411 1.19525 1.20309 1.19539 0.92717 0.92361 0.92807 0.91300 0.91356 0.92118 0.91147 0.91497 0.75135 0.85177 0.87292 0.87358 0.85200 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.67 37.15 0.36 -1.13 16 2 C -0.10 -1.29 4.75 -26.73 -0.13 -1.42 16 3 C -0.11 -1.47 2.72 -91.78 -0.25 -1.72 16 4 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 5 C -0.15 -2.00 8.85 37.16 0.33 -1.67 16 6 C 0.51 9.20 7.00 -10.99 -0.08 9.13 16 7 O -0.54 -11.07 13.34 5.54 0.07 -10.99 16 8 N -0.65 -12.62 5.05 -9.73 -0.05 -12.67 16 9 C 0.06 1.41 6.33 -83.48 -0.53 0.88 16 10 C -0.08 -1.56 8.70 -39.42 -0.34 -1.90 16 11 C -0.20 -3.69 10.04 -39.56 -0.40 -4.09 16 12 C -0.08 -1.61 10.04 -39.57 -0.40 -2.00 16 13 C -0.22 -4.86 9.16 -39.42 -0.36 -5.22 16 14 C 0.14 3.23 6.67 -38.93 -0.26 2.98 16 15 O -0.18 -4.83 9.31 0.03 0.00 -4.83 16 16 C -0.39 -10.51 9.49 30.88 0.29 -10.21 16 17 H 0.09 2.28 5.21 -52.49 -0.27 2.00 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.07 13.67 55.48 0.76 -23.31 16 20 Si 0.94 20.02 29.55 -169.99 -5.02 14.99 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 26 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.07 0.90 7.96 -51.93 -0.41 0.48 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.06 7.67 -51.93 -0.40 0.66 16 31 H 0.07 0.74 6.57 -51.93 -0.34 0.40 16 32 H 0.41 7.67 8.12 -40.82 -0.33 7.34 16 33 H 0.13 2.60 6.19 -52.48 -0.32 2.27 16 34 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 310.19 15.07 4.67 4.67 Total: -1.00 -30.29 310.19 -6.23 -36.53 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -4.81 Total: 11.01 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -1.85 Total: -15.40 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.71 Total: -35.98 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.07 Total: -15.82 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.29 -6.23 -36.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036682184.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.578 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds