Wall clock time and date at job start Mon Mar 30 2020 06:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47380 * 2 1 4 4 H 1.09001 * 109.46900 * 304.99753 * 3 2 1 5 5 C 1.52997 * 109.47351 * 64.99687 * 3 2 1 6 6 C 1.50695 * 109.47395 * 185.00088 * 3 2 1 7 7 O 1.21296 * 120.00069 * 359.97438 * 6 3 2 8 8 N 1.34772 * 120.00374 * 179.97438 * 6 3 2 9 9 C 1.39997 * 120.00238 * 175.61883 * 8 6 3 10 10 C 1.38729 * 120.10003 * 34.59018 * 9 8 6 11 11 C 1.38181 * 119.99704 * 180.02562 * 10 9 8 12 12 C 1.38354 * 120.20619 * 359.97438 * 11 10 9 13 13 C 1.38164 * 120.20054 * 359.97438 * 12 11 10 14 14 C 1.38748 * 119.99900 * 0.02562 * 13 12 11 15 15 O 1.35774 * 120.09901 * 180.02562 * 14 13 12 16 16 C 1.34809 * 117.00028 * 354.56282 * 15 14 13 17 17 H 1.07995 * 119.99776 * 5.04120 * 16 15 14 18 18 C 1.38644 * 119.99858 * 185.04580 * 16 15 14 19 19 N 1.31563 * 119.99898 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99858 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47112 * 59.99712 * 20 18 16 22 22 H 1.48497 * 109.46982 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47109 * 299.99813 * 20 18 16 24 24 H 1.08992 * 109.47598 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47569 * 300.00533 * 1 2 3 26 26 H 1.09009 * 109.47251 * 59.99927 * 1 2 3 27 27 H 1.08999 * 109.47477 * 239.99980 * 2 1 3 28 28 H 1.08999 * 109.47402 * 120.00004 * 2 1 3 29 29 H 1.09001 * 109.47065 * 60.00167 * 5 3 2 30 30 H 1.09002 * 109.47326 * 180.02562 * 5 3 2 31 31 H 1.09002 * 109.47158 * 300.00516 * 5 3 2 32 32 H 0.97004 * 120.00001 * 355.62790 * 8 6 3 33 33 H 1.08003 * 119.99987 * 359.97438 * 10 9 8 34 34 H 1.07996 * 119.89919 * 179.97438 * 11 10 9 35 35 H 1.07996 * 119.90002 * 180.28489 * 12 11 10 36 36 H 1.07999 * 119.99929 * 180.02562 * 13 12 11 37 37 H 0.97009 * 119.99921 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5418 1.4443 -0.1238 7 8 4.1451 0.3950 -0.2038 8 7 4.2149 2.6117 -0.1458 9 6 5.6146 2.6125 -0.1683 10 6 6.3000 1.6183 -0.8513 11 6 7.6817 1.6208 -0.8717 12 6 8.3858 2.6130 -0.2128 13 6 7.7116 3.6078 0.4690 14 6 6.3244 3.6134 0.4950 15 8 5.6598 4.5902 1.1640 16 6 6.4044 5.4600 1.8757 17 1 7.4823 5.4113 1.8303 18 6 5.7863 6.4170 2.6659 19 7 4.4732 6.4765 2.7208 20 14 6.8180 7.6218 3.6525 21 1 7.6708 8.4141 2.7305 22 1 5.9242 8.5359 4.4079 23 1 7.6792 6.8734 4.6030 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.0698 1.5876 2.1491 30 1 1.9982 3.1544 1.3071 31 1 0.5489 2.1253 1.3968 32 1 3.7293 3.4515 -0.1459 33 1 5.7537 0.8420 -1.3664 34 1 8.2137 0.8459 -1.4035 35 1 9.4655 2.6128 -0.2358 36 1 8.2645 4.3809 0.9818 37 1 4.0407 7.1463 3.2734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036682184.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:31 Heat of formation + Delta-G solvation = -70.471226 kcal Electronic energy + Delta-G solvation = -19767.803306 eV Core-core repulsion = 16702.666722 eV Total energy + Delta-G solvation = -3065.136584 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.68071 -40.29925 -38.11180 -36.40312 -35.68186 -34.24353 -31.33889 -30.66528 -29.66830 -27.32948 -26.27484 -24.19435 -23.18518 -22.17866 -20.71954 -19.85711 -19.27745 -18.06694 -17.62301 -16.63731 -16.37943 -16.10439 -15.87817 -15.49576 -15.41152 -15.03051 -14.74420 -14.43125 -14.25557 -13.66872 -13.50858 -13.16200 -13.00548 -12.74997 -12.61965 -12.56516 -12.47085 -12.36807 -12.15974 -11.74333 -11.58560 -11.47010 -11.22153 -10.78168 -10.59602 -9.40832 -8.73014 -8.45436 -6.10621 0.44210 0.67699 1.37320 1.46660 1.51569 1.61287 2.15598 2.23231 2.85274 3.13785 3.41907 3.62378 3.83907 3.96636 4.15406 4.26361 4.35988 4.48861 4.51964 4.61629 4.62313 4.71621 4.83547 4.90794 5.01602 5.09007 5.12016 5.12221 5.20873 5.35646 5.45928 5.49363 5.52008 5.69846 5.74595 6.00459 6.20020 6.51565 6.99656 7.15607 7.74843 8.76074 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017212 B = 0.006309 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.369856 B = 4437.254276 C = 5947.384924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C -0.100 4.100 4 H 0.121 0.879 5 C -0.142 4.142 6 C 0.508 3.492 7 O -0.566 6.566 8 N -0.653 5.653 9 C 0.054 3.946 10 C -0.088 4.088 11 C -0.179 4.179 12 C -0.081 4.081 13 C -0.231 4.231 14 C 0.098 3.902 15 O -0.217 6.217 16 C -0.414 4.414 17 H 0.099 0.901 18 C -0.015 4.015 19 N -0.911 5.911 20 Si 1.012 2.988 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.262 1.262 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.098 0.902 32 H 0.413 0.587 33 H 0.134 0.866 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.128 0.872 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.496 -6.975 -5.121 9.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.138 4.138 3 C -0.120 4.120 4 H 0.139 0.861 5 C -0.199 4.199 6 C 0.297 3.703 7 O -0.446 6.446 8 N -0.297 5.297 9 C -0.040 4.040 10 C -0.108 4.108 11 C -0.198 4.198 12 C -0.100 4.100 13 C -0.251 4.251 14 C 0.046 3.954 15 O -0.123 6.123 16 C -0.490 4.490 17 H 0.116 0.884 18 C -0.213 4.213 19 N -0.549 5.549 20 Si 0.832 3.168 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.187 1.187 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.249 0.751 33 H 0.152 0.848 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.146 0.854 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.534 -7.542 -5.042 9.736 hybrid contribution 0.327 1.135 0.628 1.338 sum -3.207 -6.407 -4.414 8.415 Atomic orbital electron populations 1.21809 0.93093 1.02688 1.02833 1.21305 0.97235 0.92969 1.02284 1.21398 0.88325 1.00580 1.01745 0.86099 1.21809 1.03637 0.99678 0.94814 1.21565 0.91753 0.82419 0.74536 1.90598 1.71058 1.32194 1.50716 1.43339 1.04467 1.10070 1.71821 1.17275 0.83259 0.98625 1.04835 1.21054 0.95097 0.97172 0.97455 1.21055 0.92924 1.01269 1.04532 1.21184 1.00668 0.92869 0.95241 1.21217 0.92757 1.03513 1.07613 1.19631 0.92198 0.90118 0.93436 1.83863 1.35599 1.35950 1.56900 1.21712 0.91693 1.10728 1.24826 0.88351 1.26397 0.97540 0.99549 0.97837 1.70133 1.09773 1.35446 1.39535 0.84727 0.77285 0.76899 0.77858 1.18272 1.19706 1.18708 0.91595 0.91746 0.91503 0.91929 0.92929 0.93762 0.93169 0.88315 0.75062 0.84815 0.83415 0.83300 0.85438 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.67 71.98 0.70 -1.80 16 2 C -0.10 -2.38 4.75 30.59 0.15 -2.23 16 3 C -0.10 -2.65 2.72 -11.54 -0.03 -2.68 16 4 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 5 C -0.14 -3.82 8.85 71.98 0.64 -3.19 16 6 C 0.51 18.46 7.00 87.66 0.61 19.07 16 7 O -0.57 -23.37 13.34 -3.08 -0.04 -23.41 16 8 N -0.65 -26.19 5.05 -303.09 -1.53 -27.72 16 9 C 0.05 2.42 6.33 38.25 0.24 2.66 16 10 C -0.09 -3.48 8.70 22.37 0.19 -3.29 16 11 C -0.18 -6.17 10.04 22.28 0.22 -5.95 16 12 C -0.08 -2.86 10.04 22.28 0.22 -2.64 16 13 C -0.23 -10.03 9.16 22.37 0.21 -9.83 16 14 C 0.10 4.82 6.67 22.69 0.15 4.98 16 15 O -0.22 -12.24 9.31 -22.79 -0.21 -12.45 16 16 C -0.41 -23.06 9.49 67.92 0.64 -22.41 16 17 H 0.10 5.08 5.21 -2.91 -0.02 5.07 16 18 C -0.01 -0.80 5.49 84.83 0.47 -0.33 16 19 N -0.91 -52.65 13.67 21.61 0.30 -52.35 16 20 Si 1.01 41.43 29.55 68.60 2.03 43.46 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 1.02 6.56 -2.39 -0.02 1.01 16 26 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.06 1.57 7.96 -2.39 -0.02 1.55 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.56 7.67 -2.39 -0.02 1.54 16 31 H 0.10 2.01 6.57 -2.39 -0.02 2.00 16 32 H 0.41 16.18 8.12 -92.71 -0.75 15.43 16 33 H 0.13 5.22 6.19 -2.91 -0.02 5.20 16 34 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 35 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 36 H 0.13 5.49 5.64 -2.91 -0.02 5.47 16 37 H 0.27 14.53 8.31 -92.70 -0.77 13.75 16 Total: -1.00 -68.06 310.19 5.28 -62.78 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 0.33 Total: 37.33 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 4.41 Total: -27.64 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -1.24 Total: -80.07 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.25 Total: -35.86 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -68.06 5.28 -62.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036682184.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.691 kcal (2) G-P(sol) polarization free energy of solvation -68.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds