Wall clock time and date at job start Mon Mar 30 2020 06:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47218 * 2 1 4 4 H 1.09001 * 109.46655 * 55.00017 * 3 2 1 5 5 C 1.52996 * 109.47222 * 295.00605 * 3 2 1 6 6 C 1.50701 * 109.47274 * 175.00203 * 3 2 1 7 7 O 1.21292 * 119.99858 * 359.97438 * 6 3 2 8 8 N 1.34778 * 119.99870 * 180.02562 * 6 3 2 9 9 C 1.39987 * 119.99695 * 176.09616 * 8 6 3 10 10 C 1.38725 * 120.10585 * 25.51837 * 9 8 6 11 11 C 1.38190 * 119.99946 * 179.72869 * 10 9 8 12 12 C 1.38352 * 120.20233 * 0.02562 * 11 10 9 13 13 C 1.38157 * 120.20380 * 359.97438 * 12 11 10 14 14 C 1.38755 * 119.99860 * 359.97438 * 13 12 11 15 15 O 1.35781 * 120.09790 * 180.02562 * 14 13 12 16 16 C 1.34811 * 117.00087 * 5.62623 * 15 14 13 17 17 H 1.07999 * 119.99958 * 5.37164 * 16 15 14 18 18 C 1.38636 * 119.99873 * 185.37092 * 16 15 14 19 19 N 1.31570 * 119.99912 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46772 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.46946 * 119.99828 * 20 18 16 23 23 H 1.48495 * 109.47051 * 240.00121 * 20 18 16 24 24 H 1.09001 * 109.46792 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46971 * 299.99638 * 1 2 3 26 26 H 1.08994 * 109.46762 * 59.99892 * 1 2 3 27 27 H 1.09001 * 109.46971 * 240.00362 * 2 1 3 28 28 H 1.09001 * 109.47390 * 120.00263 * 2 1 3 29 29 H 1.09000 * 109.47614 * 59.99526 * 5 3 2 30 30 H 1.09002 * 109.47057 * 180.02562 * 5 3 2 31 31 H 1.09001 * 109.46825 * 299.99307 * 5 3 2 32 32 H 0.96996 * 120.00130 * 356.08384 * 8 6 3 33 33 H 1.08001 * 120.00095 * 359.74969 * 10 9 8 34 34 H 1.07994 * 119.90107 * 179.97438 * 11 10 9 35 35 H 1.07998 * 119.90126 * 179.97438 * 12 11 10 36 36 H 1.07998 * 120.00306 * 180.02562 * 13 12 11 37 37 H 0.96999 * 120.00089 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3072 6 6 3.5420 1.4443 0.1238 7 8 4.1451 0.3951 0.2046 8 7 4.2149 2.6119 0.1458 9 6 5.6009 2.6173 0.3427 10 6 6.3571 1.5067 -0.0026 11 6 7.7258 1.5166 0.1876 12 6 8.3462 2.6315 0.7225 13 6 7.6011 3.7421 1.0694 14 6 6.2264 3.7417 0.8811 15 8 5.4923 4.8322 1.2208 16 6 6.1705 5.9244 1.6265 17 1 7.2497 5.9353 1.5876 18 6 5.4825 7.0337 2.0937 19 7 4.1677 7.0206 2.1407 20 14 6.4222 8.5473 2.6552 21 1 7.8801 8.3096 2.5028 22 1 6.0212 9.7138 1.8284 23 1 6.1123 8.8215 4.0814 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.5489 2.1253 -1.3968 30 1 1.9990 3.1541 -1.3074 31 1 2.0699 1.5876 -2.1491 32 1 3.7389 3.4483 0.0249 33 1 5.8762 0.6346 -0.4204 34 1 8.3130 0.6510 -0.0815 35 1 9.4161 2.6338 0.8695 36 1 8.0888 4.6108 1.4864 37 1 3.6864 7.7965 2.4679 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036682186.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:34 Heat of formation + Delta-G solvation = -49.867953 kcal Electronic energy + Delta-G solvation = -19690.193657 eV Core-core repulsion = 16625.950497 eV Total energy + Delta-G solvation = -3064.243159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.20419 -38.66236 -36.40873 -35.26727 -34.15933 -32.30201 -30.13933 -29.09013 -28.20029 -25.43964 -25.18367 -22.77036 -21.59830 -20.81014 -19.34022 -18.03780 -17.64630 -16.63727 -16.00425 -15.38276 -14.76910 -14.52362 -14.30490 -13.97816 -13.80711 -13.58847 -13.39157 -13.08996 -12.65189 -12.45030 -12.12807 -11.76868 -11.70219 -11.48506 -11.43645 -11.14834 -10.94179 -10.78822 -10.72163 -10.65169 -10.47873 -9.81563 -9.63308 -8.97897 -8.87433 -7.72015 -6.98079 -6.50981 -4.08184 2.06008 2.36337 3.08262 3.09511 3.11190 3.16296 3.59558 3.92185 4.60303 4.78393 4.89332 4.97413 5.04702 5.16598 5.34095 5.42744 5.49139 5.60961 5.75445 5.83841 5.87048 5.91926 5.96345 6.05926 6.09781 6.25622 6.31277 6.38336 6.47262 6.79330 6.90957 7.09604 7.20517 7.33437 7.40684 7.84200 7.93244 8.04145 8.61775 8.95984 9.62049 10.67245 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.005900 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.230542 B = 4744.334836 C = 6106.355434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.103 4.103 3 C -0.111 4.111 4 H 0.099 0.901 5 C -0.147 4.147 6 C 0.511 3.489 7 O -0.538 6.538 8 N -0.646 5.646 9 C 0.067 3.933 10 C -0.092 4.092 11 C -0.195 4.195 12 C -0.089 4.089 13 C -0.220 4.220 14 C 0.131 3.869 15 O -0.182 6.182 16 C -0.388 4.388 17 H 0.092 0.908 18 C 0.040 3.960 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.415 0.585 33 H 0.145 0.855 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 -7.388 -4.636 9.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C -0.132 4.132 4 H 0.117 0.883 5 C -0.204 4.204 6 C 0.299 3.701 7 O -0.417 6.417 8 N -0.289 5.289 9 C -0.027 4.027 10 C -0.112 4.112 11 C -0.215 4.215 12 C -0.108 4.108 13 C -0.240 4.240 14 C 0.077 3.923 15 O -0.086 6.086 16 C -0.464 4.464 17 H 0.110 0.890 18 C -0.164 4.164 19 N -0.501 5.501 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.251 0.749 33 H 0.163 0.837 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.148 0.852 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.700 -7.909 -4.500 9.823 hybrid contribution 0.390 1.345 0.415 1.461 sum -3.310 -6.564 -4.085 8.410 Atomic orbital electron populations 1.21847 0.95683 1.01602 1.01934 1.21322 0.95120 0.94304 1.03372 1.21344 0.91762 0.99269 1.00808 0.88256 1.21842 1.02183 1.00672 0.95733 1.20700 0.89903 0.83381 0.76104 1.90560 1.69608 1.31686 1.49796 1.43227 1.06484 1.09828 1.69370 1.17027 0.82422 0.95430 1.07861 1.21225 0.93249 0.97607 0.99088 1.20591 0.94226 0.98793 1.07847 1.20792 0.98573 0.93195 0.98218 1.20982 0.93169 1.00506 1.09372 1.19120 0.90851 0.87986 0.94390 1.83898 1.33864 1.17936 1.72950 1.21336 0.91973 0.89597 1.43532 0.89044 1.25244 0.95902 0.98682 0.96594 1.70022 1.06049 1.30472 1.43532 0.85648 0.79196 0.80083 0.78534 1.19108 1.20171 1.20191 0.92682 0.92663 0.92464 0.91422 0.91150 0.91238 0.91798 0.92159 0.74869 0.83719 0.87317 0.87424 0.85204 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.67 37.16 0.36 -1.10 16 2 C -0.10 -1.25 4.75 -26.73 -0.13 -1.38 16 3 C -0.11 -1.48 2.73 -91.77 -0.25 -1.73 16 4 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 5 C -0.15 -1.67 8.84 37.16 0.33 -1.34 16 6 C 0.51 9.04 7.04 -10.98 -0.08 8.96 16 7 O -0.54 -10.75 12.84 5.55 0.07 -10.68 16 8 N -0.65 -12.57 5.20 -9.73 -0.05 -12.62 16 9 C 0.07 1.47 6.47 -83.49 -0.54 0.93 16 10 C -0.09 -1.88 8.80 -39.42 -0.35 -2.22 16 11 C -0.20 -3.68 10.04 -39.56 -0.40 -4.08 16 12 C -0.09 -1.70 10.04 -39.57 -0.40 -2.09 16 13 C -0.22 -4.83 9.13 -39.42 -0.36 -5.19 16 14 C 0.13 3.13 6.66 -38.93 -0.26 2.88 16 15 O -0.18 -4.92 9.18 0.01 0.00 -4.92 16 16 C -0.39 -10.47 9.44 30.88 0.29 -10.18 16 17 H 0.09 2.32 5.29 -52.49 -0.28 2.04 16 18 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 19 N -0.87 -24.21 13.67 55.48 0.76 -23.45 16 20 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 22 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.94 7.95 -51.93 -0.41 0.52 16 29 H 0.07 0.65 6.56 -51.93 -0.34 0.31 16 30 H 0.06 0.75 7.48 -51.93 -0.39 0.36 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.41 7.85 7.67 -40.82 -0.31 7.53 16 33 H 0.15 2.94 5.51 -52.49 -0.29 2.65 16 34 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.13 2.81 5.71 -52.49 -0.30 2.51 16 37 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 308.76 15.07 4.65 4.65 Total: -1.00 -30.27 308.76 -6.22 -36.49 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -4.76 Total: 11.11 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -1.87 Total: -15.59 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.71 Total: -36.07 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.07 Total: -15.60 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.27 -6.22 -36.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036682186.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.374 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds