Wall clock time and date at job start Mon Mar 30 2020 06:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47218 * 2 1 4 4 H 1.09001 * 109.46655 * 55.00017 * 3 2 1 5 5 C 1.52996 * 109.47222 * 295.00605 * 3 2 1 6 6 C 1.50701 * 109.47274 * 175.00203 * 3 2 1 7 7 O 1.21292 * 119.99858 * 359.97438 * 6 3 2 8 8 N 1.34778 * 119.99870 * 180.02562 * 6 3 2 9 9 C 1.39987 * 119.99695 * 176.09616 * 8 6 3 10 10 C 1.38725 * 120.10585 * 25.51837 * 9 8 6 11 11 C 1.38190 * 119.99946 * 179.72869 * 10 9 8 12 12 C 1.38352 * 120.20233 * 0.02562 * 11 10 9 13 13 C 1.38157 * 120.20380 * 359.97438 * 12 11 10 14 14 C 1.38755 * 119.99860 * 359.97438 * 13 12 11 15 15 O 1.35781 * 120.09790 * 180.02562 * 14 13 12 16 16 C 1.34811 * 117.00087 * 5.62623 * 15 14 13 17 17 H 1.07999 * 119.99958 * 5.37164 * 16 15 14 18 18 C 1.38636 * 119.99873 * 185.37092 * 16 15 14 19 19 N 1.31570 * 119.99912 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46772 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.46946 * 119.99828 * 20 18 16 23 23 H 1.48495 * 109.47051 * 240.00121 * 20 18 16 24 24 H 1.09001 * 109.46792 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46971 * 299.99638 * 1 2 3 26 26 H 1.08994 * 109.46762 * 59.99892 * 1 2 3 27 27 H 1.09001 * 109.46971 * 240.00362 * 2 1 3 28 28 H 1.09001 * 109.47390 * 120.00263 * 2 1 3 29 29 H 1.09000 * 109.47614 * 59.99526 * 5 3 2 30 30 H 1.09002 * 109.47057 * 180.02562 * 5 3 2 31 31 H 1.09001 * 109.46825 * 299.99307 * 5 3 2 32 32 H 0.96996 * 120.00130 * 356.08384 * 8 6 3 33 33 H 1.08001 * 120.00095 * 359.74969 * 10 9 8 34 34 H 1.07994 * 119.90107 * 179.97438 * 11 10 9 35 35 H 1.07998 * 119.90126 * 179.97438 * 12 11 10 36 36 H 1.07998 * 120.00306 * 180.02562 * 13 12 11 37 37 H 0.96999 * 120.00089 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3072 6 6 3.5420 1.4443 0.1238 7 8 4.1451 0.3951 0.2046 8 7 4.2149 2.6119 0.1458 9 6 5.6009 2.6173 0.3427 10 6 6.3571 1.5067 -0.0026 11 6 7.7258 1.5166 0.1876 12 6 8.3462 2.6315 0.7225 13 6 7.6011 3.7421 1.0694 14 6 6.2264 3.7417 0.8811 15 8 5.4923 4.8322 1.2208 16 6 6.1705 5.9244 1.6265 17 1 7.2497 5.9353 1.5876 18 6 5.4825 7.0337 2.0937 19 7 4.1677 7.0206 2.1407 20 14 6.4222 8.5473 2.6552 21 1 7.8801 8.3096 2.5028 22 1 6.0212 9.7138 1.8284 23 1 6.1123 8.8215 4.0814 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.5489 2.1253 -1.3968 30 1 1.9990 3.1541 -1.3074 31 1 2.0699 1.5876 -2.1491 32 1 3.7389 3.4483 0.0249 33 1 5.8762 0.6346 -0.4204 34 1 8.3130 0.6510 -0.0815 35 1 9.4161 2.6338 0.8695 36 1 8.0888 4.6108 1.4864 37 1 3.6864 7.7965 2.4679 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036682186.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:34 Heat of formation + Delta-G solvation = -68.133465 kcal Electronic energy + Delta-G solvation = -19690.985709 eV Core-core repulsion = 16625.950497 eV Total energy + Delta-G solvation = -3065.035211 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.73925 -40.31228 -38.10119 -36.41511 -35.71280 -34.24787 -31.35003 -30.66014 -29.66273 -27.34075 -26.26184 -24.21755 -23.20360 -22.20612 -20.67409 -19.87517 -19.29401 -18.10431 -17.66669 -16.70861 -16.35379 -16.01882 -15.78298 -15.60718 -15.35036 -15.15431 -14.69687 -14.42395 -14.26091 -13.65418 -13.54540 -13.16781 -12.99486 -12.86345 -12.65408 -12.53332 -12.44457 -12.32164 -12.10394 -11.73659 -11.60183 -11.49182 -11.36052 -10.79353 -10.48362 -9.39227 -8.69134 -8.46384 -6.11509 0.44215 0.67371 1.37628 1.44365 1.54225 1.62837 2.13169 2.20743 2.85539 3.16843 3.37044 3.60389 3.83172 3.97065 4.17177 4.26876 4.36253 4.50261 4.52939 4.60615 4.65206 4.71721 4.82962 4.93214 5.01464 5.09042 5.10731 5.12408 5.21221 5.35441 5.44216 5.49253 5.52390 5.69283 5.75907 6.00061 6.22132 6.51344 6.99136 7.12363 7.74230 8.75816 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.005900 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.230542 B = 4744.334836 C = 6106.355434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.105 4.105 4 H 0.105 0.895 5 C -0.143 4.143 6 C 0.508 3.492 7 O -0.562 6.562 8 N -0.652 5.652 9 C 0.058 3.942 10 C -0.103 4.103 11 C -0.177 4.177 12 C -0.086 4.086 13 C -0.228 4.228 14 C 0.094 3.906 15 O -0.219 6.219 16 C -0.410 4.410 17 H 0.099 0.901 18 C -0.016 4.016 19 N -0.914 5.914 20 Si 1.014 2.986 21 H -0.254 1.254 22 H -0.269 1.269 23 H -0.272 1.272 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.414 0.586 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.127 0.873 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.895 -8.078 -5.089 9.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.137 4.137 3 C -0.126 4.126 4 H 0.123 0.877 5 C -0.200 4.200 6 C 0.298 3.702 7 O -0.442 6.442 8 N -0.294 5.294 9 C -0.037 4.037 10 C -0.123 4.123 11 C -0.196 4.196 12 C -0.104 4.104 13 C -0.248 4.248 14 C 0.042 3.958 15 O -0.126 6.126 16 C -0.487 4.487 17 H 0.117 0.883 18 C -0.214 4.214 19 N -0.552 5.552 20 Si 0.834 3.166 21 H -0.178 1.178 22 H -0.194 1.194 23 H -0.197 1.197 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.250 0.750 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.145 0.855 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.945 -8.643 -4.972 10.397 hybrid contribution 0.238 1.307 0.477 1.411 sum -2.707 -7.337 -4.495 9.020 Atomic orbital electron populations 1.21816 0.93243 1.02689 1.02748 1.21306 0.97131 0.92907 1.02405 1.21427 0.88255 1.00691 1.02201 0.87715 1.21845 1.03919 0.99823 0.94395 1.21545 0.91645 0.82336 0.74701 1.90527 1.70600 1.32274 1.50754 1.43382 1.05904 1.10508 1.69634 1.17369 0.83797 0.95298 1.07223 1.21443 0.94244 0.97151 0.99510 1.21091 0.93707 0.99701 1.05071 1.21177 1.00408 0.91905 0.96940 1.21194 0.92701 1.01585 1.09292 1.19571 0.92027 0.88251 0.95974 1.83867 1.34892 1.18831 1.75005 1.21783 0.92605 0.90324 1.43950 0.88332 1.26412 0.96889 1.01691 0.96416 1.70146 1.07834 1.31732 1.45443 0.84584 0.78283 0.75719 0.78021 1.17751 1.19391 1.19679 0.91527 0.92375 0.91092 0.91734 0.92830 0.88513 0.92619 0.92016 0.74960 0.83489 0.83502 0.83421 0.85503 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.67 71.98 0.70 -1.79 16 2 C -0.10 -2.31 4.75 30.60 0.15 -2.17 16 3 C -0.10 -2.75 2.73 -11.54 -0.03 -2.78 16 4 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 5 C -0.14 -3.08 8.84 71.98 0.64 -2.44 16 6 C 0.51 18.18 7.04 87.66 0.62 18.80 16 7 O -0.56 -22.56 12.84 -3.07 -0.04 -22.60 16 8 N -0.65 -26.15 5.20 -303.10 -1.58 -27.72 16 9 C 0.06 2.59 6.47 38.25 0.25 2.84 16 10 C -0.10 -4.15 8.80 22.37 0.20 -3.95 16 11 C -0.18 -6.17 10.04 22.29 0.22 -5.95 16 12 C -0.09 -3.05 10.04 22.28 0.22 -2.83 16 13 C -0.23 -9.94 9.13 22.37 0.20 -9.74 16 14 C 0.09 4.61 6.66 22.69 0.15 4.76 16 15 O -0.22 -12.39 9.18 -22.89 -0.21 -12.60 16 16 C -0.41 -22.86 9.44 67.92 0.64 -22.22 16 17 H 0.10 5.11 5.29 -2.91 -0.02 5.09 16 18 C -0.02 -0.86 5.49 84.83 0.47 -0.40 16 19 N -0.91 -52.91 13.67 21.61 0.30 -52.61 16 20 Si 1.01 41.41 29.55 68.60 2.03 43.44 16 21 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 22 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 1.01 6.56 -2.39 -0.02 0.99 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.41 7.95 -2.39 -0.02 1.39 16 29 H 0.10 1.58 6.56 -2.39 -0.02 1.56 16 30 H 0.05 1.30 7.48 -2.39 -0.02 1.28 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.41 16.51 7.67 -92.71 -0.71 15.80 16 33 H 0.15 5.86 5.51 -2.91 -0.02 5.84 16 34 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 35 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.13 5.51 5.71 -2.91 -0.02 5.49 16 37 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -67.56 308.76 5.29 -62.26 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: 0.38 Total: 37.70 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 4.42 Total: -27.88 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -1.28 Total: -80.33 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.25 Total: -35.20 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -67.56 5.29 -62.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036682186.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.872 kcal (2) G-P(sol) polarization free energy of solvation -67.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds