Wall clock time and date at job start Mon Mar 30 2020 06:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46946 * 2 1 4 4 C 1.52993 * 109.47155 * 119.99878 * 2 1 3 5 5 C 1.50702 * 109.47259 * 65.00055 * 4 2 1 6 6 O 1.21292 * 119.99884 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00221 * 179.97438 * 5 4 2 8 8 C 1.39994 * 119.99871 * 175.63970 * 7 5 4 9 9 C 1.38717 * 120.10408 * 34.56381 * 8 7 5 10 10 C 1.38185 * 120.00058 * 179.97438 * 9 8 7 11 11 C 1.38349 * 120.19971 * 0.02562 * 10 9 8 12 12 C 1.38157 * 120.20606 * 359.97438 * 11 10 9 13 13 C 1.38747 * 119.99756 * 0.02562 * 12 11 10 14 14 O 1.35774 * 120.10033 * 179.97438 * 13 12 11 15 15 C 1.34804 * 117.00225 * 354.55607 * 14 13 12 16 16 H 1.08001 * 120.00088 * 5.04431 * 15 14 13 17 17 C 1.38644 * 120.00455 * 185.04248 * 15 14 13 18 18 N 1.31567 * 119.99446 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00182 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46947 * 90.00310 * 19 17 15 21 21 H 1.48505 * 109.47215 * 210.00032 * 19 17 15 22 22 H 1.48497 * 109.47249 * 330.00412 * 19 17 15 23 23 H 1.08994 * 109.47087 * 300.00015 * 1 2 3 24 24 H 1.09005 * 109.47143 * 60.00068 * 1 2 3 25 25 H 1.08995 * 109.47031 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46991 * 240.00231 * 2 1 3 27 27 H 1.08999 * 109.46729 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46655 * 299.99924 * 3 2 1 29 29 H 1.08994 * 109.47239 * 60.00078 * 3 2 1 30 30 H 1.09003 * 109.47429 * 305.00197 * 4 2 1 31 31 H 1.09001 * 109.47282 * 185.00051 * 4 2 1 32 32 H 0.97004 * 119.99727 * 355.63905 * 7 5 4 33 33 H 1.08003 * 120.00419 * 0.25636 * 9 8 7 34 34 H 1.08003 * 119.90459 * 179.97438 * 10 9 8 35 35 H 1.08007 * 119.90037 * 179.97438 * 11 10 9 36 36 H 1.08006 * 120.00462 * 180.02562 * 12 11 10 37 37 H 0.97006 * 119.99650 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1889 6 8 1.0109 -2.5902 0.2403 7 7 1.9854 -3.0087 2.1890 8 6 1.5379 -4.3351 2.1782 9 6 1.3983 -5.0126 0.9758 10 6 0.9569 -6.3220 0.9677 11 6 0.6525 -6.9612 2.1563 12 6 0.7885 -6.2944 3.3587 13 6 1.2310 -4.9795 3.3766 14 8 1.3648 -4.3222 4.5570 15 6 0.9451 -4.9636 5.6658 16 1 0.6009 -5.9853 5.6010 17 6 0.9551 -4.3119 6.8895 18 7 1.3749 -3.0675 6.9686 19 14 0.3727 -5.2006 8.4259 20 1 1.5223 -5.8906 9.0644 21 1 -0.2051 -4.2177 9.3773 22 1 -0.6619 -6.2001 8.0574 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6054 -0.2617 2.1370 31 1 3.1264 -0.6443 1.2951 32 1 2.5431 -2.6908 2.9163 33 1 1.6390 -4.5181 0.0462 34 1 0.8484 -6.8478 0.0306 35 1 0.3075 -7.9846 2.1443 36 1 0.5503 -6.7967 4.2847 37 1 1.3816 -2.6114 7.8247 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036987876.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:49 Heat of formation + Delta-G solvation = -51.959943 kcal Electronic energy + Delta-G solvation = -19629.888832 eV Core-core repulsion = 16565.554957 eV Total energy + Delta-G solvation = -3064.333875 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.08482 -38.64819 -36.45153 -35.42679 -34.03488 -32.30256 -29.69640 -28.87439 -27.31419 -26.99026 -25.38514 -22.45508 -21.43982 -20.38384 -19.49904 -18.02123 -17.59570 -16.62841 -15.98305 -15.36075 -14.68992 -14.61061 -14.30289 -14.01507 -13.75486 -13.58416 -13.38604 -13.08729 -12.55389 -12.22018 -12.11017 -11.84456 -11.71873 -11.46702 -11.15111 -11.02631 -10.90126 -10.78797 -10.74558 -10.59213 -10.49772 -9.69076 -9.61311 -9.06189 -8.87052 -7.74740 -7.01974 -6.50777 -4.08007 2.06191 2.35390 3.08718 3.09711 3.11353 3.15624 3.65762 3.92363 4.57975 4.85069 4.97251 4.99644 5.04021 5.19493 5.40290 5.58160 5.69446 5.70707 5.72967 5.79585 5.83605 5.96695 6.03367 6.05628 6.19120 6.25575 6.43802 6.46173 6.60965 6.76178 6.91901 7.07843 7.20645 7.33776 7.38927 7.81272 7.93139 8.04210 8.66733 8.96032 9.62086 10.67320 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017733 B = 0.005788 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.613376 B = 4836.355618 C = 6146.778476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.078 4.078 3 C -0.147 4.147 4 C -0.137 4.137 5 C 0.509 3.491 6 O -0.536 6.536 7 N -0.652 5.652 8 C 0.065 3.935 9 C -0.076 4.076 10 C -0.197 4.197 11 C -0.085 4.085 12 C -0.223 4.223 13 C 0.135 3.865 14 O -0.180 6.180 15 C -0.389 4.389 16 H 0.092 0.908 17 C 0.040 3.960 18 N -0.865 5.865 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.268 1.268 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.413 0.587 33 H 0.131 0.869 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.728 3.394 -8.546 9.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.097 4.097 3 C -0.205 4.205 4 C -0.177 4.177 5 C 0.297 3.703 6 O -0.414 6.414 7 N -0.296 5.296 8 C -0.029 4.029 9 C -0.096 4.096 10 C -0.217 4.217 11 C -0.104 4.104 12 C -0.243 4.243 13 C 0.081 3.919 14 O -0.084 6.084 15 C -0.465 4.465 16 H 0.109 0.891 17 C -0.164 4.164 18 N -0.500 5.500 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.249 0.751 33 H 0.148 0.852 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.148 0.852 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.398 3.562 -8.956 9.739 hybrid contribution -0.075 -0.377 1.331 1.385 sum 1.324 3.185 -7.625 8.369 Atomic orbital electron populations 1.21968 0.94788 1.03640 1.00745 1.20832 0.96660 0.95067 0.97152 1.21866 1.00754 0.96033 1.01831 1.21768 1.02778 0.92107 1.01055 1.20724 0.79181 0.88085 0.82320 1.90604 1.40081 1.77717 1.33021 1.43230 1.51100 1.09297 1.25942 1.16918 1.09668 0.84543 0.91770 1.20818 0.98951 0.93605 0.96262 1.20547 1.08560 0.95296 0.97296 1.20784 0.98666 0.98632 0.92292 1.20996 1.09714 0.94856 0.98723 1.19171 0.94642 0.91601 0.86531 1.83890 1.71595 1.41676 1.11233 1.21294 1.43996 0.97930 0.83326 0.89075 1.25245 0.96876 0.95879 0.98393 1.70017 1.43591 1.10249 1.26163 0.85713 0.79007 0.78709 0.80034 1.19898 1.20288 1.19208 0.93341 0.93268 0.90475 0.90567 0.92778 0.92618 0.92596 0.88590 0.89044 0.75141 0.85150 0.87304 0.87372 0.85210 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.93 37.16 0.33 -1.72 16 2 C -0.08 -0.96 2.57 -90.62 -0.23 -1.19 16 3 C -0.15 -1.44 9.19 37.16 0.34 -1.10 16 4 C -0.14 -1.80 5.18 -27.89 -0.14 -1.95 16 5 C 0.51 8.88 7.39 -10.98 -0.08 8.80 16 6 O -0.54 -10.52 11.38 5.55 0.06 -10.45 16 7 N -0.65 -12.50 5.19 -9.73 -0.05 -12.55 16 8 C 0.06 1.41 6.33 -83.49 -0.53 0.88 16 9 C -0.08 -1.53 8.69 -39.42 -0.34 -1.87 16 10 C -0.20 -3.67 10.04 -39.56 -0.40 -4.06 16 11 C -0.08 -1.60 10.04 -39.57 -0.40 -2.00 16 12 C -0.22 -4.85 9.16 -39.42 -0.36 -5.21 16 13 C 0.14 3.22 6.67 -38.93 -0.26 2.96 16 14 O -0.18 -4.86 9.32 0.05 0.00 -4.86 16 15 C -0.39 -10.52 9.49 30.88 0.29 -10.23 16 16 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -24.24 13.67 55.48 0.76 -23.49 16 19 Si 0.94 20.07 29.55 -169.99 -5.02 15.04 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.08 1.25 5.95 -51.93 -0.31 0.94 16 26 H 0.08 0.99 7.96 -51.93 -0.41 0.58 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.41 7.56 8.57 -40.82 -0.35 7.21 16 33 H 0.13 2.56 6.20 -52.48 -0.33 2.23 16 34 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 35 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.13 2.78 5.64 -52.48 -0.30 2.49 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 310.54 15.07 4.68 4.68 Total: -1.00 -30.20 310.54 -6.35 -36.55 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -4.91 Total: 10.82 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -1.87 Total: -15.74 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.71 Total: -36.04 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.06 Total: -15.31 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.20 -6.35 -36.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036987876.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.409 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds