Wall clock time and date at job start Mon Mar 30 2020 07:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35982 * 116.99950 * 2 1 4 4 C 1.38725 * 120.06945 * 0.02562 * 3 2 1 5 5 C 1.37939 * 119.89834 * 179.88949 * 4 3 2 6 6 C 1.39127 * 120.29550 * 359.97438 * 5 4 3 7 7 C 1.38347 * 119.78642 * 0.17593 * 6 5 4 8 8 C 1.38506 * 119.87738 * 359.77662 * 7 6 5 9 9 C 1.50777 * 121.41116 * 179.72821 * 7 6 5 10 10 H 1.09001 * 109.43639 * 257.82764 * 9 7 6 11 11 N 1.46898 * 109.43694 * 137.91453 * 9 7 6 12 12 C 1.46906 * 110.99847 * 154.49080 * 11 9 7 13 13 C 1.50703 * 109.46987 * 174.84837 * 12 11 9 14 14 H 1.08004 * 120.00056 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00060 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00062 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00049 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47260 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47194 * 119.99376 * 17 15 13 20 20 H 1.48499 * 109.47199 * 239.99542 * 17 15 13 21 21 C 1.53069 * 109.69375 * 17.84631 * 9 7 6 22 22 C 1.53405 * 108.30772 * 311.79688 * 21 9 7 23 23 O 1.35946 * 118.43048 * 180.45666 * 6 5 4 24 24 H 1.08990 * 109.47204 * 299.99999 * 1 2 3 25 25 H 1.08999 * 109.47060 * 60.00014 * 1 2 3 26 26 H 1.08995 * 109.46982 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.04598 * 359.90514 * 4 3 2 28 28 H 1.08006 * 119.85168 * 179.97438 * 5 4 3 29 29 H 1.07998 * 119.85675 * 180.13090 * 8 7 6 30 30 H 1.00901 * 110.99460 * 30.54103 * 11 9 7 31 31 H 1.08994 * 109.47452 * 294.84950 * 12 11 9 32 32 H 1.08995 * 109.46718 * 54.85062 * 12 11 9 33 33 H 0.96999 * 119.99867 * 180.02562 * 16 15 13 34 34 H 1.08995 * 109.69699 * 71.50335 * 21 9 7 35 35 H 1.09004 * 109.69749 * 192.09565 * 21 9 7 36 36 H 1.09002 * 109.68070 * 305.00684 * 22 21 9 37 37 H 1.08994 * 109.72350 * 184.46138 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2922 2.3760 0.0005 5 6 1.9221 3.6031 0.0028 6 6 3.3113 3.6790 0.0052 7 6 4.0630 2.5175 0.0015 8 6 3.4296 1.2858 0.0002 9 6 5.5702 2.5570 -0.0023 10 1 5.9359 2.3514 -1.0083 11 7 6.0882 1.5407 0.9233 12 6 7.4412 1.1180 0.5375 13 6 7.9876 0.1730 1.5766 14 1 7.3894 -0.0878 2.4372 15 6 9.2511 -0.3586 1.4285 16 7 9.9793 -0.0414 0.3803 17 14 9.9281 -1.5305 2.7160 18 1 8.9191 -1.7244 3.7883 19 1 10.2353 -2.8380 2.0826 20 1 11.1682 -0.9603 3.3011 21 6 6.0511 3.9412 0.4403 22 6 5.2696 4.9983 -0.3503 23 8 3.8924 4.9079 0.0169 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2136 2.3216 -0.0006 28 1 1.3342 4.5092 0.0028 29 1 4.0168 0.3793 -0.0006 30 1 5.4640 0.7498 0.9779 31 1 7.4029 0.6137 -0.4280 32 1 8.0881 1.9922 0.4654 33 1 10.8681 -0.4156 0.2760 34 1 5.8676 4.0702 1.5069 35 1 7.1169 4.0427 0.2354 36 1 5.3777 4.8118 -1.4188 37 1 5.6490 5.9917 -0.1109 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037240345.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:31 Heat of formation + Delta-G solvation = -48.457445 kcal Electronic energy + Delta-G solvation = -19668.523947 eV Core-core repulsion = 16604.341952 eV Total energy + Delta-G solvation = -3064.181995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.70795 -39.14841 -36.47760 -35.83650 -32.96977 -31.05705 -30.51095 -29.66419 -27.18311 -26.57636 -24.23119 -23.17630 -22.34249 -21.18142 -19.67509 -17.99023 -17.52149 -16.66757 -16.33083 -15.73161 -15.21131 -15.01654 -14.63678 -14.54308 -14.14590 -13.79860 -13.20924 -13.10610 -12.92449 -12.68083 -12.41479 -12.17234 -11.91625 -11.54082 -11.26276 -10.95336 -10.79517 -10.72937 -10.55477 -10.37627 -10.15249 -9.85764 -9.17793 -8.83350 -8.48106 -7.63796 -7.32128 -6.04443 -4.06078 1.33765 1.56831 3.28930 3.31213 3.38490 3.44206 3.49298 3.81578 4.42772 4.76371 4.81638 4.94632 5.01162 5.05971 5.06976 5.13677 5.24438 5.31856 5.36139 5.41201 5.64006 5.69308 5.75344 5.89033 5.99942 6.09701 6.22409 6.38019 6.50636 6.64311 6.66821 7.19174 7.33681 7.37406 7.63878 7.77518 8.09265 8.34940 8.54388 9.03123 9.59071 11.06637 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018968 B = 0.005290 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.840192 B = 5292.188758 C = 6533.194660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.095 3.905 4 C -0.179 4.179 5 C -0.115 4.115 6 C 0.103 3.897 7 C -0.105 4.105 8 C -0.112 4.112 9 C 0.126 3.874 10 H 0.053 0.947 11 N -0.680 5.680 12 C 0.192 3.808 13 C -0.511 4.511 14 H 0.063 0.937 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.145 4.145 22 C 0.062 3.938 23 O -0.320 6.320 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.097 0.903 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.333 0.667 31 H -0.012 1.012 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.084 6.616 -3.164 18.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.050 3.950 4 C -0.198 4.198 5 C -0.133 4.133 6 C 0.057 3.943 7 C -0.107 4.107 8 C -0.131 4.131 9 C 0.016 3.984 10 H 0.070 0.930 11 N -0.313 5.313 12 C 0.066 3.934 13 C -0.550 4.550 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.183 4.183 22 C -0.013 4.013 23 O -0.234 6.234 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.005 0.995 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.663 7.013 -2.732 18.283 hybrid contribution 0.301 -1.221 -0.209 1.275 sum -16.362 5.791 -2.941 17.604 Atomic orbital electron populations 1.22993 0.78939 1.03644 1.01032 1.86101 1.20862 1.26796 1.89348 1.18759 0.92039 0.84128 1.00066 1.20916 0.99660 0.91512 1.07719 1.20277 0.91473 0.97769 1.03815 1.18536 0.91612 0.83948 1.00166 1.19897 0.96321 0.91790 1.02643 1.20163 0.91336 0.98017 1.03581 1.20291 0.87608 0.94733 0.95762 0.92989 1.60826 1.06057 1.15197 1.49170 1.19650 0.83576 0.95440 0.94725 1.21201 1.00284 1.26007 1.07505 0.91829 1.24980 0.96873 0.96870 0.95826 1.69969 1.10830 1.44682 1.28351 0.86424 0.78897 0.80476 0.81529 1.19619 1.21080 1.21005 1.22235 1.00940 0.93470 1.01700 1.23020 0.78812 1.00755 0.98747 1.85942 1.26830 1.26280 1.84365 0.92848 0.92961 0.88499 0.85193 0.85192 0.84690 0.84686 0.99457 0.95236 0.92966 0.89638 0.89632 0.92181 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.36 10.50 -19.68 -0.21 -4.57 16 3 C 0.09 1.39 6.68 -39.29 -0.26 1.13 16 4 C -0.18 -2.27 9.03 -39.51 -0.36 -2.63 16 5 C -0.11 -1.54 9.93 -39.36 -0.39 -1.93 16 6 C 0.10 1.61 6.47 -39.21 -0.25 1.36 16 7 C -0.11 -1.78 5.56 -104.45 -0.58 -2.36 16 8 C -0.11 -1.85 8.85 -39.38 -0.35 -2.20 16 9 C 0.13 2.33 2.65 -68.79 -0.18 2.14 16 10 H 0.05 0.99 7.85 -51.93 -0.41 0.58 16 11 N -0.68 -14.83 6.26 -109.14 -0.68 -15.52 16 12 C 0.19 5.01 5.21 -4.97 -0.03 4.99 16 13 C -0.51 -14.54 9.36 -34.44 -0.32 -14.86 16 14 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 17 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 C -0.15 -2.38 5.60 -26.49 -0.15 -2.53 16 22 C 0.06 0.83 7.03 37.37 0.26 1.09 16 23 O -0.32 -4.83 10.27 -19.57 -0.20 -5.03 16 24 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 25 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.13 1.24 6.31 -52.49 -0.33 0.91 16 28 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 29 H 0.14 2.30 6.61 -52.49 -0.35 1.95 16 30 H 0.33 7.08 6.22 -39.29 -0.24 6.84 16 31 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 16 32 H 0.03 0.81 7.59 -51.93 -0.39 0.42 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 35 H 0.09 1.42 7.74 -51.93 -0.40 1.01 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 305.36 15.07 4.60 4.60 Total: -1.00 -31.55 305.36 -7.49 -39.04 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.00 Total: 3.76 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -1.72 Total: -13.06 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.05 Total: -41.54 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.41 Total: -9.60 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.55 -7.49 -39.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240345.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.415 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds