Wall clock time and date at job start Mon Mar 30 2020 06:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47450 * 2 1 4 4 H 1.08999 * 109.47117 * 54.99822 * 3 2 1 5 5 C 1.50693 * 109.47147 * 175.00252 * 3 2 1 6 6 O 1.20827 * 120.00450 * 99.99924 * 5 3 2 7 7 O 1.34228 * 120.00168 * 279.99867 * 5 3 2 8 8 N 1.46507 * 109.47034 * 295.00269 * 3 2 1 9 9 C 1.46497 * 119.99866 * 306.51502 * 8 3 2 10 10 C 1.50698 * 109.46945 * 269.99847 * 9 8 3 11 11 H 1.08006 * 120.00280 * 0.02562 * 10 9 8 12 12 C 1.37884 * 120.00083 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00088 * 180.02562 * 12 10 9 14 14 Si 1.86794 * 119.99858 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47261 * 89.99790 * 14 12 10 16 16 H 1.48503 * 109.47325 * 209.99884 * 14 12 10 17 17 H 1.48508 * 109.47235 * 330.00112 * 14 12 10 18 18 C 1.39671 * 119.99840 * 126.51502 * 8 3 2 19 19 C 1.38915 * 120.07323 * 354.36921 * 18 8 3 20 20 C 1.38105 * 119.92226 * 180.02562 * 19 18 8 21 21 C 1.38285 * 120.07456 * 359.97438 * 20 19 18 22 22 C 1.38286 * 120.15286 * 0.27156 * 21 20 19 23 23 C 1.38110 * 120.07119 * 359.45673 * 22 21 20 24 24 H 1.09002 * 109.47298 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46661 * 299.99837 * 1 2 3 26 26 H 1.09001 * 109.46688 * 59.99803 * 1 2 3 27 27 H 1.09002 * 109.46661 * 240.00163 * 2 1 3 28 28 H 1.08998 * 109.47060 * 120.00861 * 2 1 3 29 29 H 0.96705 * 117.00496 * 180.02562 * 7 5 3 30 30 H 1.08997 * 109.47496 * 29.99849 * 9 8 3 31 31 H 1.08998 * 109.47229 * 150.00185 * 9 8 3 32 32 H 0.96995 * 120.00013 * 180.02562 * 13 12 10 33 33 H 1.07996 * 120.03825 * 359.97438 * 19 18 8 34 34 H 1.07998 * 119.96250 * 180.02562 * 20 19 18 35 35 H 1.08004 * 119.92861 * 180.02562 * 21 20 19 36 36 H 1.07996 * 119.96671 * 179.70465 * 22 21 20 37 37 H 1.08001 * 120.03820 * 180.27961 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 8 4.2290 1.5965 -0.8584 7 8 4.1166 1.2764 1.3252 8 7 1.6525 2.0975 -1.2518 9 6 1.9924 1.4813 -2.5367 10 6 3.3419 1.9760 -2.9897 11 1 3.8916 2.6788 -2.3811 12 6 3.8753 1.5306 -4.1806 13 7 5.0533 1.9620 -4.5756 14 14 2.9250 0.3146 -5.2328 15 1 2.0582 1.0551 -6.1845 16 1 3.8783 -0.5356 -5.9902 17 1 2.0826 -0.5425 -4.3603 18 6 0.9589 3.3094 -1.2202 19 6 0.5334 3.8365 -0.0074 20 6 -0.1526 5.0348 0.0202 21 6 -0.4156 5.7101 -1.1576 22 6 0.0022 5.1857 -2.3671 23 6 0.6936 3.9906 -2.4014 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 5.0831 1.2853 1.3547 30 1 2.0219 0.3976 -2.4235 31 1 1.2398 1.7488 -3.2784 32 1 5.4284 1.6489 -5.4135 33 1 0.7381 3.3094 0.9127 34 1 -0.4834 5.4453 0.9627 35 1 -0.9519 6.6472 -1.1332 36 1 -0.2090 5.7132 -3.2855 37 1 1.0235 3.5838 -3.3459 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037374365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:21 Heat of formation + Delta-G solvation = -37.509074 kcal Electronic energy + Delta-G solvation = -20696.007815 eV Core-core repulsion = 17632.300577 eV Total energy + Delta-G solvation = -3063.707238 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.00528 -38.68585 -36.43981 -35.15547 -33.20165 -32.17380 -30.50817 -29.23682 -28.31243 -25.98174 -22.98390 -22.26829 -21.84402 -20.90614 -19.09006 -17.71239 -17.17278 -16.86358 -15.78157 -15.23686 -15.09051 -14.85520 -14.21854 -13.98726 -13.54361 -13.31443 -13.10517 -12.96456 -12.56279 -12.28029 -12.12586 -11.69113 -11.51818 -11.19889 -11.11764 -10.87304 -10.79538 -10.68306 -10.44046 -10.38929 -10.11937 -9.88736 -9.00496 -8.77015 -8.42888 -8.38435 -6.62307 -5.90598 -3.82311 1.96226 2.13220 2.95908 3.28115 3.34639 3.35979 3.42082 3.94963 4.45901 4.47567 4.99894 5.10587 5.28454 5.40626 5.41229 5.45156 5.55654 5.72884 5.83838 5.94583 5.95542 6.02796 6.16362 6.20903 6.29235 6.39637 6.49136 6.70949 6.78531 6.97523 6.99891 7.15827 7.19167 7.44787 7.68785 7.91208 8.19590 8.65689 8.69199 9.34365 9.67191 11.22769 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.014253 B = 0.009503 C = 0.007379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.057759 B = 2945.775435 C = 3793.605417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.172 3.828 4 H 0.111 0.889 5 C 0.418 3.582 6 O -0.421 6.421 7 O -0.540 6.540 8 N -0.590 5.590 9 C 0.219 3.781 10 C -0.491 4.491 11 H 0.097 0.903 12 C 0.065 3.935 13 N -0.900 5.900 14 Si 0.859 3.141 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.269 1.269 18 C 0.234 3.766 19 C -0.217 4.217 20 C -0.079 4.079 21 C -0.195 4.195 22 C -0.077 4.077 23 C -0.176 4.176 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.399 0.601 30 H 0.028 0.972 31 H 0.027 0.973 32 H 0.259 0.741 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.798 -0.360 10.710 14.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.064 3.936 4 H 0.128 0.872 5 C 0.254 3.746 6 O -0.301 6.301 7 O -0.353 6.353 8 N -0.298 5.298 9 C 0.099 3.901 10 C -0.530 4.530 11 H 0.114 0.886 12 C -0.135 4.135 13 N -0.541 5.541 14 Si 0.687 3.313 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.194 1.194 18 C 0.131 3.869 19 C -0.239 4.239 20 C -0.097 4.097 21 C -0.215 4.215 22 C -0.096 4.096 23 C -0.198 4.198 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.257 0.743 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.785 -0.534 10.192 14.139 hybrid contribution 0.525 -0.669 -0.699 1.101 sum -9.261 -1.203 9.493 13.316 Atomic orbital electron populations 1.21677 0.94495 1.01481 1.02420 1.21841 0.97197 0.94322 1.03543 1.20272 0.87322 0.96041 0.89950 0.87190 1.24645 0.93578 0.75472 0.80907 1.91276 1.64364 1.38902 1.35537 1.84498 1.28123 1.86057 1.36614 1.46564 1.57529 1.20567 1.05131 1.19754 0.97044 0.93390 0.79913 1.21613 1.00515 1.26678 1.04207 0.88576 1.24853 0.94963 0.96324 0.97382 1.69892 1.16957 1.44889 1.22330 0.87139 0.80280 0.82430 0.81483 1.20274 1.21311 1.19437 1.17859 0.89877 0.85430 0.93740 1.20615 1.07781 0.99452 0.96070 1.20692 0.97283 0.94253 0.97514 1.20736 1.06693 1.01269 0.92808 1.20870 0.96386 0.94950 0.97426 1.20925 1.04175 0.96714 0.98033 0.92653 0.92763 0.91911 0.90243 0.90508 0.74276 0.95389 0.95530 0.93087 0.86767 0.87088 0.87366 0.86798 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.80 37.16 0.36 -1.45 16 2 C -0.13 -1.91 5.23 -26.73 -0.14 -2.05 16 3 C 0.17 2.92 2.49 -69.08 -0.17 2.74 16 4 H 0.11 1.62 5.32 -51.93 -0.28 1.34 16 5 C 0.42 7.97 7.55 36.00 0.27 8.24 16 6 O -0.42 -10.32 12.23 -18.75 -0.23 -10.55 16 7 O -0.54 -8.12 13.42 -39.25 -0.53 -8.64 16 8 N -0.59 -11.71 1.92 -166.87 -0.32 -12.03 16 9 C 0.22 5.07 3.47 -5.20 -0.02 5.06 16 10 C -0.49 -13.74 7.42 -34.44 -0.26 -14.00 16 11 H 0.10 3.06 6.14 -52.48 -0.32 2.74 16 12 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 13 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 14 Si 0.86 21.21 27.47 -169.99 -4.67 16.54 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 18 C 0.23 4.46 6.54 -83.79 -0.55 3.91 16 19 C -0.22 -3.52 9.32 -39.38 -0.37 -3.89 16 20 C -0.08 -1.16 10.04 -39.61 -0.40 -1.56 16 21 C -0.19 -2.92 10.04 -39.55 -0.40 -3.31 16 22 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 23 C -0.18 -3.41 9.16 -39.38 -0.36 -3.77 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.91 7.75 -51.93 -0.40 0.50 16 27 H 0.08 1.33 6.25 -51.93 -0.32 1.01 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.40 4.63 9.10 45.56 0.41 5.04 16 30 H 0.03 0.66 5.07 -51.93 -0.26 0.39 16 31 H 0.03 0.62 5.88 -51.93 -0.31 0.31 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.11 1.63 5.74 -52.49 -0.30 1.33 16 34 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.11 1.35 8.06 -52.48 -0.42 0.92 16 36 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 37 H 0.13 2.80 6.26 -52.49 -0.33 2.48 16 LS Contribution 300.75 15.07 4.53 4.53 Total: -1.00 -33.31 300.75 -6.77 -40.08 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -3.81 Total: 7.39 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -2.51 Total: -9.96 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.45 Total: -39.40 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.76 Total: -19.19 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.31 -6.77 -40.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037374365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.569 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds