Wall clock time and date at job start Mon Mar 30 2020 06:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47450 * 2 1 4 4 H 1.08999 * 109.47117 * 54.99822 * 3 2 1 5 5 C 1.50693 * 109.47147 * 175.00252 * 3 2 1 6 6 O 1.20827 * 120.00450 * 99.99924 * 5 3 2 7 7 O 1.34228 * 120.00168 * 279.99867 * 5 3 2 8 8 N 1.46507 * 109.47034 * 295.00269 * 3 2 1 9 9 C 1.46497 * 119.99866 * 306.51502 * 8 3 2 10 10 C 1.50698 * 109.46945 * 269.99847 * 9 8 3 11 11 H 1.08006 * 120.00280 * 0.02562 * 10 9 8 12 12 C 1.37884 * 120.00083 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00088 * 180.02562 * 12 10 9 14 14 Si 1.86794 * 119.99858 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47261 * 89.99790 * 14 12 10 16 16 H 1.48503 * 109.47325 * 209.99884 * 14 12 10 17 17 H 1.48508 * 109.47235 * 330.00112 * 14 12 10 18 18 C 1.39671 * 119.99840 * 126.51502 * 8 3 2 19 19 C 1.38915 * 120.07323 * 354.36921 * 18 8 3 20 20 C 1.38105 * 119.92226 * 180.02562 * 19 18 8 21 21 C 1.38285 * 120.07456 * 359.97438 * 20 19 18 22 22 C 1.38286 * 120.15286 * 0.27156 * 21 20 19 23 23 C 1.38110 * 120.07119 * 359.45673 * 22 21 20 24 24 H 1.09002 * 109.47298 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46661 * 299.99837 * 1 2 3 26 26 H 1.09001 * 109.46688 * 59.99803 * 1 2 3 27 27 H 1.09002 * 109.46661 * 240.00163 * 2 1 3 28 28 H 1.08998 * 109.47060 * 120.00861 * 2 1 3 29 29 H 0.96705 * 117.00496 * 180.02562 * 7 5 3 30 30 H 1.08997 * 109.47496 * 29.99849 * 9 8 3 31 31 H 1.08998 * 109.47229 * 150.00185 * 9 8 3 32 32 H 0.96995 * 120.00013 * 180.02562 * 13 12 10 33 33 H 1.07996 * 120.03825 * 359.97438 * 19 18 8 34 34 H 1.07998 * 119.96250 * 180.02562 * 20 19 18 35 35 H 1.08004 * 119.92861 * 180.02562 * 21 20 19 36 36 H 1.07996 * 119.96671 * 179.70465 * 22 21 20 37 37 H 1.08001 * 120.03820 * 180.27961 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 8 4.2290 1.5965 -0.8584 7 8 4.1166 1.2764 1.3252 8 7 1.6525 2.0975 -1.2518 9 6 1.9924 1.4813 -2.5367 10 6 3.3419 1.9760 -2.9897 11 1 3.8916 2.6788 -2.3811 12 6 3.8753 1.5306 -4.1806 13 7 5.0533 1.9620 -4.5756 14 14 2.9250 0.3146 -5.2328 15 1 2.0582 1.0551 -6.1845 16 1 3.8783 -0.5356 -5.9902 17 1 2.0826 -0.5425 -4.3603 18 6 0.9589 3.3094 -1.2202 19 6 0.5334 3.8365 -0.0074 20 6 -0.1526 5.0348 0.0202 21 6 -0.4156 5.7101 -1.1576 22 6 0.0022 5.1857 -2.3671 23 6 0.6936 3.9906 -2.4014 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 5.0831 1.2853 1.3547 30 1 2.0219 0.3976 -2.4235 31 1 1.2398 1.7488 -3.2784 32 1 5.4284 1.6489 -5.4135 33 1 0.7381 3.3094 0.9127 34 1 -0.4834 5.4453 0.9627 35 1 -0.9519 6.6472 -1.1332 36 1 -0.2090 5.7132 -3.2855 37 1 1.0235 3.5838 -3.3459 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037374365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:21 Heat of formation + Delta-G solvation = -59.661538 kcal Electronic energy + Delta-G solvation = -20696.968418 eV Core-core repulsion = 17632.300577 eV Total energy + Delta-G solvation = -3064.667841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47322 -40.06468 -37.78741 -36.67020 -34.93082 -33.83499 -31.87323 -30.79458 -29.72206 -27.53515 -24.67257 -23.55941 -23.20123 -22.30014 -20.52971 -19.27144 -19.00511 -18.27786 -17.37742 -16.71380 -16.46768 -16.38529 -15.91004 -15.35779 -14.92065 -14.68101 -14.60575 -14.30252 -14.09713 -13.90612 -13.45814 -13.22873 -12.98149 -12.73372 -12.51495 -12.39047 -12.30600 -12.10646 -12.00129 -11.87329 -11.66012 -11.44339 -10.79096 -10.59406 -10.48595 -9.68667 -8.14141 -8.05875 -6.07000 0.67619 0.83359 1.31620 1.32740 1.40967 1.46739 2.04740 2.38058 2.53106 3.15960 3.16994 3.75237 3.90217 4.12989 4.25999 4.33855 4.37272 4.54173 4.63945 4.67689 4.75349 4.80180 4.87395 4.94755 5.03996 5.09555 5.21366 5.29148 5.42056 5.54612 5.61451 5.73937 5.84613 5.87032 6.15445 6.28637 6.59420 6.77508 6.99309 7.31568 7.46128 9.05045 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.014253 B = 0.009503 C = 0.007379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.057759 B = 2945.775435 C = 3793.605417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.168 3.832 4 H 0.141 0.859 5 C 0.423 3.577 6 O -0.489 6.489 7 O -0.521 6.521 8 N -0.599 5.599 9 C 0.234 3.766 10 C -0.473 4.473 11 H 0.048 0.952 12 C -0.006 4.006 13 N -0.959 5.959 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.290 1.290 17 H -0.246 1.246 18 C 0.207 3.793 19 C -0.214 4.214 20 C -0.073 4.073 21 C -0.188 4.188 22 C -0.084 4.084 23 C -0.211 4.211 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.103 0.897 29 H 0.416 0.584 30 H 0.031 0.969 31 H 0.028 0.972 32 H 0.257 0.743 33 H 0.137 0.863 34 H 0.151 0.849 35 H 0.141 0.859 36 H 0.129 0.871 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.768 -0.461 13.214 18.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.164 4.164 3 C 0.061 3.939 4 H 0.158 0.842 5 C 0.262 3.738 6 O -0.374 6.374 7 O -0.334 6.334 8 N -0.307 5.307 9 C 0.111 3.889 10 C -0.512 4.512 11 H 0.066 0.934 12 C -0.200 4.200 13 N -0.603 5.603 14 Si 0.753 3.247 15 H -0.193 1.193 16 H -0.216 1.216 17 H -0.170 1.170 18 C 0.106 3.894 19 C -0.236 4.236 20 C -0.091 4.091 21 C -0.208 4.208 22 C -0.103 4.103 23 C -0.234 4.234 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.121 0.879 29 H 0.276 0.724 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.155 0.845 34 H 0.169 0.831 35 H 0.159 0.841 36 H 0.147 0.853 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.796 -0.625 12.766 18.086 hybrid contribution 1.457 -0.477 -1.274 1.993 sum -11.340 -1.102 11.492 16.182 Atomic orbital electron populations 1.21638 0.92615 1.02713 1.02403 1.21852 0.98706 0.92389 1.03440 1.20668 0.85813 0.97833 0.89579 0.84213 1.25181 0.94511 0.73348 0.80743 1.91263 1.65858 1.42283 1.37949 1.84449 1.29676 1.84999 1.34311 1.46399 1.58298 1.21335 1.04713 1.19326 0.94127 0.93392 0.82006 1.21766 1.01844 1.24620 1.02956 0.93405 1.25751 0.96023 0.98963 0.99247 1.70090 1.19442 1.47559 1.23166 0.85999 0.78935 0.80016 0.79714 1.19282 1.21621 1.16972 1.18151 0.90937 0.85508 0.94842 1.20906 1.07101 1.00027 0.95550 1.21187 0.95598 0.93200 0.99120 1.21160 1.05496 1.02115 0.92037 1.21115 0.95870 0.94020 0.99269 1.20886 1.06632 0.98643 0.97192 0.90832 0.90577 0.94052 0.92965 0.87889 0.72431 0.95081 0.95454 0.93425 0.84514 0.83109 0.84086 0.85345 0.88279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.80 71.98 0.71 -2.33 16 2 C -0.13 -3.40 5.23 30.59 0.16 -3.23 16 3 C 0.17 5.45 2.49 44.24 0.11 5.56 16 4 H 0.14 3.64 5.32 -2.39 -0.01 3.63 16 5 C 0.42 16.10 7.55 71.23 0.54 16.63 16 6 O -0.49 -25.07 12.23 21.96 0.27 -24.80 16 7 O -0.52 -14.82 13.42 -51.39 -0.69 -15.51 16 8 N -0.60 -23.81 1.92 -681.85 -1.31 -25.11 16 9 C 0.23 11.10 3.47 85.63 0.30 11.39 16 10 C -0.47 -27.85 7.42 25.60 0.19 -27.66 16 11 H 0.05 3.27 6.14 -2.91 -0.02 3.25 16 12 C -0.01 -0.34 5.47 84.66 0.46 0.12 16 13 N -0.96 -63.44 13.96 21.45 0.30 -63.14 16 14 Si 0.93 45.33 27.47 68.60 1.88 47.21 16 15 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 16 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 17 H -0.25 -10.94 6.54 99.48 0.65 -10.28 16 18 C 0.21 7.79 6.54 38.22 0.25 8.04 16 19 C -0.21 -6.31 9.32 22.40 0.21 -6.10 16 20 C -0.07 -1.83 10.04 22.25 0.22 -1.60 16 21 C -0.19 -4.97 10.04 22.29 0.22 -4.75 16 22 C -0.08 -2.69 10.04 22.25 0.22 -2.47 16 23 C -0.21 -8.34 9.16 22.40 0.21 -8.13 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.04 1.10 7.75 -2.39 -0.02 1.08 16 27 H 0.05 1.70 6.25 -2.39 -0.01 1.69 16 28 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.42 9.18 9.10 -74.05 -0.67 8.50 16 30 H 0.03 1.47 5.07 -2.39 -0.01 1.46 16 31 H 0.03 1.30 5.88 -2.39 -0.01 1.29 16 32 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 33 H 0.14 3.32 5.74 -2.91 -0.02 3.30 16 34 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.10 4.48 6.26 -2.91 -0.02 4.46 16 Total: -1.00 -78.31 300.75 4.62 -73.69 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.37 Total: 22.19 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 3.80 Total: -14.52 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -1.01 Total: -88.26 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.42 Total: -40.31 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.21 kcal Total: -78.31 4.62 -73.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037374365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.030 kcal (2) G-P(sol) polarization free energy of solvation -78.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds