Wall clock time and date at job start Mon Mar 30 2020 06:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47227 * 2 1 4 4 H 1.09008 * 109.46852 * 304.99980 * 3 2 1 5 5 C 1.50695 * 109.47397 * 184.99968 * 3 2 1 6 6 O 1.20831 * 119.99938 * 260.00032 * 5 3 2 7 7 O 1.34229 * 120.00328 * 79.99309 * 5 3 2 8 8 N 1.46503 * 109.47277 * 64.99361 * 3 2 1 9 9 C 1.46501 * 119.99691 * 58.74613 * 8 3 2 10 10 C 1.50695 * 109.47162 * 269.99920 * 9 8 3 11 11 H 1.08006 * 119.99784 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00226 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99914 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99910 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47216 * 60.00412 * 14 12 10 16 16 H 1.48501 * 109.46523 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47283 * 299.99643 * 14 12 10 18 18 C 1.39674 * 120.00219 * 238.74215 * 8 3 2 19 19 C 1.38905 * 120.07467 * 174.15440 * 18 8 3 20 20 C 1.38102 * 119.92381 * 180.27957 * 19 18 8 21 21 C 1.38281 * 120.07561 * 359.50865 * 20 19 18 22 22 C 1.38293 * 120.15023 * 0.47387 * 21 20 19 23 23 C 1.38105 * 120.07109 * 359.78248 * 22 21 20 24 24 H 1.09005 * 109.47368 * 300.00682 * 1 2 3 25 25 H 1.09007 * 109.46999 * 60.00450 * 1 2 3 26 26 H 1.08998 * 109.47562 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47218 * 239.99511 * 2 1 3 28 28 H 1.09007 * 109.46999 * 119.99550 * 2 1 3 29 29 H 0.96695 * 117.00230 * 180.02562 * 7 5 3 30 30 H 1.08997 * 109.47299 * 29.99887 * 9 8 3 31 31 H 1.09000 * 109.46814 * 149.99894 * 9 8 3 32 32 H 0.96994 * 119.99875 * 179.97438 * 13 12 10 33 33 H 1.08000 * 120.03800 * 359.97438 * 19 18 8 34 34 H 1.08005 * 119.96159 * 179.72380 * 20 19 18 35 35 H 1.08000 * 119.92990 * 180.20710 * 21 20 19 36 36 H 1.08000 * 119.96197 * 179.77015 * 22 21 20 37 37 H 1.07993 * 120.03531 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 8 4.2288 1.5968 0.8584 7 8 4.1165 1.2765 -1.3252 8 7 1.6523 2.0976 1.2518 9 6 2.0909 1.5432 2.5349 10 6 1.0684 0.5533 3.0303 11 1 0.1803 0.3570 2.4477 12 6 1.2659 -0.1012 4.2277 13 7 2.3470 0.1382 4.9373 14 14 -0.0020 -1.3277 4.8419 15 1 -0.1483 -2.4258 3.8529 16 1 0.4427 -1.8897 6.1426 17 1 -1.3080 -0.6432 5.0185 18 6 0.8647 3.2507 1.2218 19 6 0.3950 3.8038 2.4062 20 6 -0.3883 4.9407 2.3726 21 6 -0.6968 5.5341 1.1623 22 6 -0.2306 4.9863 -0.0188 23 6 0.5488 3.8465 0.0073 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.0830 1.2847 -1.3546 30 1 3.0496 1.0411 2.4052 31 1 2.1981 2.3489 3.2611 32 1 2.4858 -0.3219 5.7798 33 1 0.6381 3.3426 3.3520 34 1 -0.7575 5.3688 3.2929 35 1 -1.3069 6.4250 1.1390 36 1 -0.4765 5.4501 -0.9626 37 1 0.9123 3.4189 -0.9154 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037374367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:24 Heat of formation + Delta-G solvation = -73.309621 kcal Electronic energy + Delta-G solvation = -20607.645307 eV Core-core repulsion = 17542.385641 eV Total energy + Delta-G solvation = -3065.259666 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.62749 -40.12423 -37.80776 -36.91011 -34.89747 -33.83586 -31.78488 -30.45552 -29.74990 -27.32157 -24.94219 -23.62721 -23.24870 -22.26984 -20.68537 -19.32355 -18.71928 -18.33740 -17.46586 -16.75398 -16.60502 -16.39647 -15.89909 -15.31062 -14.81416 -14.60790 -14.43127 -14.36833 -14.20477 -13.70206 -13.46757 -13.11915 -12.91064 -12.80688 -12.62697 -12.45179 -12.32244 -12.17060 -12.07659 -11.82157 -11.54321 -11.31513 -11.22986 -10.54065 -10.41142 -9.66964 -8.30787 -7.87376 -6.24003 0.69510 0.87688 1.19291 1.38893 1.40784 1.47914 1.92166 2.39714 2.58959 3.16635 3.18588 3.78635 3.97252 4.17817 4.29197 4.31238 4.43581 4.55131 4.68400 4.76352 4.82906 4.88194 4.91857 5.12869 5.17131 5.32141 5.34842 5.42249 5.47525 5.63086 5.71200 5.76349 5.86208 5.89593 6.19767 6.22316 6.47411 6.84648 6.94707 7.04517 7.44818 8.94363 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.009304 C = 0.006865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.656446 B = 3008.829900 C = 4077.452794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.164 3.836 4 H 0.143 0.857 5 C 0.464 3.536 6 O -0.541 6.541 7 O -0.504 6.504 8 N -0.601 5.601 9 C 0.270 3.730 10 C -0.525 4.525 11 H 0.077 0.923 12 C 0.005 3.995 13 N -0.935 5.935 14 Si 0.954 3.046 15 H -0.265 1.265 16 H -0.289 1.289 17 H -0.271 1.271 18 C 0.209 3.791 19 C -0.212 4.212 20 C -0.083 4.083 21 C -0.190 4.190 22 C -0.070 4.070 23 C -0.218 4.218 24 H 0.045 0.955 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.423 0.577 30 H 0.023 0.977 31 H -0.009 1.009 32 H 0.261 0.739 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.142 0.858 36 H 0.152 0.848 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 4.892 -14.513 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.057 3.943 4 H 0.160 0.840 5 C 0.305 3.695 6 O -0.430 6.430 7 O -0.317 6.317 8 N -0.310 5.310 9 C 0.149 3.851 10 C -0.563 4.563 11 H 0.095 0.905 12 C -0.193 4.193 13 N -0.575 5.575 14 Si 0.780 3.220 15 H -0.190 1.190 16 H -0.215 1.215 17 H -0.196 1.196 18 C 0.107 3.893 19 C -0.234 4.234 20 C -0.101 4.101 21 C -0.210 4.210 22 C -0.089 4.089 23 C -0.240 4.240 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.284 0.716 30 H 0.041 0.959 31 H 0.009 0.991 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.145 0.855 35 H 0.159 0.841 36 H 0.170 0.830 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.096 4.707 -14.059 15.382 hybrid contribution 0.727 -0.827 1.359 1.749 sum -3.369 3.880 -12.700 13.700 Atomic orbital electron populations 1.21700 0.93675 1.02037 1.02124 1.21771 0.98302 0.92813 1.02980 1.20660 0.85856 0.97825 0.89942 0.83969 1.24684 0.93432 0.70973 0.80397 1.90746 1.66073 1.46060 1.40091 1.84487 1.30322 1.84098 1.32799 1.46674 1.53176 1.26014 1.05116 1.18830 0.94756 0.92177 0.79361 1.22066 1.06759 1.22527 1.04996 0.90479 1.25807 0.97272 0.99147 0.97081 1.70106 1.28398 1.44280 1.14760 0.85665 0.79395 0.79480 0.77509 1.18987 1.21508 1.19635 1.18195 0.90296 0.86079 0.94765 1.20832 1.05271 1.00410 0.96915 1.21087 0.95866 0.93943 0.99243 1.21132 1.05305 1.02679 0.91921 1.21176 0.94699 0.93897 0.99104 1.20885 1.07273 1.00454 0.95384 0.93599 0.90900 0.92049 0.88401 0.92827 0.71553 0.95862 0.99063 0.93036 0.88875 0.85522 0.84055 0.83049 0.84623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 9.40 71.98 0.68 -3.56 16 2 C -0.12 -3.95 4.92 30.59 0.15 -3.80 16 3 C 0.16 5.59 2.49 44.24 0.11 5.70 16 4 H 0.14 3.84 5.34 -2.38 -0.01 3.83 16 5 C 0.46 16.26 7.52 71.23 0.54 16.79 16 6 O -0.54 -24.53 14.73 21.95 0.32 -24.21 16 7 O -0.50 -12.24 13.42 -51.41 -0.69 -12.93 16 8 N -0.60 -25.55 1.88 -681.84 -1.28 -26.83 16 9 C 0.27 14.46 3.79 85.63 0.32 14.78 16 10 C -0.52 -28.55 7.58 25.60 0.19 -28.36 16 11 H 0.08 4.01 4.82 -2.91 -0.01 4.00 16 12 C 0.00 0.27 5.46 84.66 0.46 0.73 16 13 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 14 Si 0.95 44.28 29.54 68.60 2.03 46.30 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 16 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 C 0.21 8.26 6.54 38.21 0.25 8.51 16 19 C -0.21 -8.83 9.16 22.40 0.21 -8.63 16 20 C -0.08 -2.76 10.04 22.25 0.22 -2.54 16 21 C -0.19 -5.18 10.04 22.29 0.22 -4.96 16 22 C -0.07 -1.82 10.04 22.25 0.22 -1.60 16 23 C -0.22 -6.67 9.29 22.40 0.21 -6.46 16 24 H 0.05 1.73 5.24 -2.38 -0.01 1.72 16 25 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.05 2.23 6.57 -2.38 -0.02 2.22 16 29 H 0.42 6.73 9.10 -74.06 -0.67 6.06 16 30 H 0.02 1.40 5.77 -2.39 -0.01 1.39 16 31 H -0.01 -0.52 6.46 -2.39 -0.02 -0.53 16 32 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.09 4.59 6.26 -2.91 -0.02 4.57 16 34 H 0.13 3.71 8.06 -2.91 -0.02 3.68 16 35 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 37 H 0.14 3.43 5.79 -2.91 -0.02 3.42 16 Total: -1.00 -71.59 302.70 4.88 -66.72 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.43 Total: 21.08 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 3.79 Total: -13.37 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -1.00 Total: -83.59 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.37 Total: -37.14 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -71.59 4.88 -66.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037374367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.594 kcal (2) G-P(sol) polarization free energy of solvation -71.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds