Wall clock time and date at job start Mon Mar 30 2020 06:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46957 * 2 1 4 4 C 1.52996 * 109.46958 * 239.99700 * 2 1 3 5 5 C 1.50700 * 109.47064 * 119.99732 * 2 1 3 6 6 O 1.21299 * 120.00070 * 0.02562 * 5 2 1 7 7 N 1.34777 * 120.00272 * 180.02562 * 5 2 1 8 8 C 1.39984 * 120.00152 * 185.55807 * 7 5 2 9 9 C 1.38726 * 120.10272 * 24.80198 * 8 7 5 10 10 C 1.38190 * 119.99772 * 180.02562 * 9 8 7 11 11 C 1.38355 * 120.20050 * 0.02562 * 10 9 8 12 12 C 1.38152 * 120.20529 * 359.97438 * 11 10 9 13 13 C 1.38741 * 120.00059 * 359.97438 * 12 11 10 14 14 O 1.35780 * 120.10207 * 179.97438 * 13 12 11 15 15 C 1.34807 * 117.00121 * 5.17052 * 14 13 12 16 16 H 1.08001 * 119.99312 * 354.97465 * 15 14 13 17 17 C 1.38635 * 120.00363 * 174.97915 * 15 14 13 18 18 N 1.31567 * 119.99707 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00212 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47163 * 59.99712 * 19 17 15 21 21 H 1.48498 * 109.47520 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47230 * 299.99979 * 19 17 15 23 23 H 1.09003 * 109.47178 * 299.99820 * 1 2 3 24 24 H 1.09000 * 109.47124 * 60.00244 * 1 2 3 25 25 H 1.09002 * 109.47043 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46989 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47005 * 299.99829 * 3 2 1 28 28 H 1.08999 * 109.47207 * 59.99349 * 3 2 1 29 29 H 1.08997 * 109.47354 * 299.99447 * 4 2 1 30 30 H 1.09000 * 109.47157 * 60.00077 * 4 2 1 31 31 H 1.09000 * 109.46876 * 180.02562 * 4 2 1 32 32 H 0.96998 * 119.99407 * 5.55139 * 7 5 2 33 33 H 1.07991 * 120.00499 * 0.02562 * 9 8 7 34 34 H 1.07998 * 119.90029 * 180.02562 * 10 9 8 35 35 H 1.08000 * 119.89498 * 179.71811 * 11 10 9 36 36 H 1.07998 * 119.99964 * 179.97438 * 12 11 10 37 37 H 0.97006 * 119.99633 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2441 -1.1717 2.0287 7 7 3.3574 -0.8331 1.4441 8 6 3.8251 -1.5918 2.5235 9 6 3.0400 -2.6052 3.0537 10 6 3.5036 -3.3525 4.1196 11 6 4.7498 -3.0932 4.6617 12 6 5.5386 -2.0859 4.1403 13 6 5.0819 -1.3311 3.0695 14 8 5.8552 -0.3403 2.5558 15 6 7.0986 -0.2105 3.0602 16 1 7.4104 -0.8242 3.8924 17 6 7.9769 0.7108 2.5109 18 7 7.5971 1.4581 1.4968 19 14 9.6995 0.8912 3.2104 20 1 10.4186 -0.4029 3.0951 21 1 10.4346 1.9357 2.4528 22 1 9.6147 1.2847 4.6398 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6767 -1.7490 -1.2491 30 1 1.6766 -0.2075 -2.1392 31 1 3.1300 -0.7217 -1.2489 32 1 3.9869 -0.3957 0.8498 33 1 2.0666 -2.8102 2.6334 34 1 2.8912 -4.1414 4.5308 35 1 5.1053 -3.6773 5.4976 36 1 6.5107 -1.8860 4.5663 37 1 8.2115 2.1030 1.1127 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037408481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:52 Heat of formation + Delta-G solvation = -48.355917 kcal Electronic energy + Delta-G solvation = -20021.254615 eV Core-core repulsion = 16957.077022 eV Total energy + Delta-G solvation = -3064.177593 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.31982 -38.73473 -36.44320 -35.36332 -34.13062 -32.29951 -29.28550 -28.54519 -27.27156 -26.99570 -25.40008 -23.48406 -21.77118 -20.98176 -18.88095 -18.00255 -17.58461 -16.40845 -15.98390 -15.05346 -14.67827 -14.47358 -14.14949 -13.88340 -13.76487 -13.65558 -13.28024 -13.05578 -12.50323 -12.29450 -12.12723 -11.83425 -11.68624 -11.62726 -11.46185 -11.11420 -10.95680 -10.87104 -10.85778 -10.73879 -10.52543 -9.82178 -9.60620 -9.02896 -8.86573 -7.71180 -6.97446 -6.50524 -4.07710 2.04583 2.35855 3.09857 3.10882 3.11600 3.13963 3.59034 3.92583 4.59914 4.75968 4.87263 4.95754 5.05618 5.15241 5.34696 5.61970 5.65491 5.73484 5.79984 5.82805 5.88211 5.91321 6.00752 6.05765 6.15128 6.26031 6.30169 6.36436 6.47612 6.77049 6.89260 7.08620 7.20090 7.33201 7.39892 7.82263 7.93479 8.04586 8.62407 8.96196 9.62068 10.67429 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018237 B = 0.006600 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.956292 B = 4241.438430 C = 5555.727840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.141 4.141 5 C 0.516 3.484 6 O -0.537 6.537 7 N -0.646 5.646 8 C 0.070 3.930 9 C -0.088 4.088 10 C -0.194 4.194 11 C -0.089 4.089 12 C -0.220 4.220 13 C 0.131 3.869 14 O -0.181 6.181 15 C -0.389 4.389 16 H 0.091 0.909 17 C 0.040 3.960 18 N -0.865 5.865 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.415 0.585 33 H 0.137 0.863 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.131 0.869 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.454 -2.796 -3.598 8.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.088 4.088 3 C -0.201 4.201 4 C -0.199 4.199 5 C 0.304 3.696 6 O -0.414 6.414 7 N -0.289 5.289 8 C -0.025 4.025 9 C -0.108 4.108 10 C -0.213 4.213 11 C -0.108 4.108 12 C -0.240 4.240 13 C 0.077 3.923 14 O -0.086 6.086 15 C -0.465 4.465 16 H 0.109 0.891 17 C -0.164 4.164 18 N -0.501 5.501 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.196 1.196 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.252 0.748 33 H 0.154 0.846 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.148 0.852 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.956 -2.739 -3.410 9.079 hybrid contribution 1.347 0.319 0.218 1.401 sum -6.609 -2.420 -3.192 7.728 Atomic orbital electron populations 1.21640 0.92141 1.02595 1.01829 1.20789 0.97773 0.96687 0.93528 1.21901 1.02193 0.93460 1.02594 1.21874 1.01792 1.00329 0.95875 1.20592 0.81946 0.79822 0.87277 1.90605 1.55484 1.48917 1.46444 1.43245 1.07312 1.49705 1.28644 1.16998 0.93900 0.97153 0.94427 1.20944 0.99678 0.93203 0.96962 1.20554 0.97257 1.03098 1.00392 1.20777 0.94171 0.96997 0.98847 1.20978 1.02312 1.00338 1.00361 1.19103 0.90926 0.89667 0.92640 1.83885 1.24928 1.42696 1.57041 1.21241 0.86395 1.22707 1.16186 0.89133 1.25231 0.99573 0.95563 0.96000 1.70001 1.36321 1.21655 1.22108 0.85784 0.80322 0.78485 0.78884 1.19528 1.20317 1.19552 0.91987 0.92225 0.92068 0.91316 0.91510 0.92045 0.92168 0.91433 0.91725 0.74836 0.84586 0.87296 0.87383 0.85187 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 7.76 37.16 0.29 -1.24 16 2 C -0.08 -1.16 0.87 -155.66 -0.14 -1.29 16 3 C -0.14 -1.87 8.37 37.16 0.31 -1.56 16 4 C -0.14 -1.66 8.38 37.16 0.31 -1.35 16 5 C 0.52 9.27 6.29 -10.99 -0.07 9.20 16 6 O -0.54 -10.95 13.15 5.54 0.07 -10.88 16 7 N -0.65 -12.68 5.06 -9.73 -0.05 -12.72 16 8 C 0.07 1.53 6.45 -83.49 -0.54 0.99 16 9 C -0.09 -1.79 8.72 -39.42 -0.34 -2.14 16 10 C -0.19 -3.64 10.04 -39.56 -0.40 -4.04 16 11 C -0.09 -1.69 10.04 -39.57 -0.40 -2.09 16 12 C -0.22 -4.81 9.16 -39.43 -0.36 -5.17 16 13 C 0.13 3.14 6.67 -38.93 -0.26 2.88 16 14 O -0.18 -4.89 9.17 0.02 0.00 -4.89 16 15 C -0.39 -10.48 9.49 30.88 0.29 -10.19 16 16 H 0.09 2.28 5.20 -52.49 -0.27 2.00 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 18 N -0.87 -24.06 13.67 55.48 0.76 -23.30 16 19 Si 0.94 19.99 29.55 -169.99 -5.02 14.96 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 26 H 0.07 0.98 7.45 -51.93 -0.39 0.59 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.79 7.70 -51.93 -0.40 0.39 16 32 H 0.41 8.01 7.21 -40.82 -0.29 7.71 16 33 H 0.14 2.75 5.79 -52.49 -0.30 2.45 16 34 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.13 2.79 5.63 -52.49 -0.30 2.50 16 37 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 309.97 15.07 4.67 4.67 Total: -1.00 -30.17 309.97 -5.85 -36.02 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -4.89 Total: 11.16 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -1.39 Total: -15.02 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.71 Total: -36.03 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.07 Total: -15.77 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.17 -5.85 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037408481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.336 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds