Wall clock time and date at job start Mon Mar 30 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46957 * 2 1 4 4 C 1.52996 * 109.46958 * 239.99700 * 2 1 3 5 5 C 1.50700 * 109.47064 * 119.99732 * 2 1 3 6 6 O 1.21299 * 120.00070 * 0.02562 * 5 2 1 7 7 N 1.34777 * 120.00272 * 180.02562 * 5 2 1 8 8 C 1.39984 * 120.00152 * 185.55807 * 7 5 2 9 9 C 1.38726 * 120.10272 * 24.80198 * 8 7 5 10 10 C 1.38190 * 119.99772 * 180.02562 * 9 8 7 11 11 C 1.38355 * 120.20050 * 0.02562 * 10 9 8 12 12 C 1.38152 * 120.20529 * 359.97438 * 11 10 9 13 13 C 1.38741 * 120.00059 * 359.97438 * 12 11 10 14 14 O 1.35780 * 120.10207 * 179.97438 * 13 12 11 15 15 C 1.34807 * 117.00121 * 5.17052 * 14 13 12 16 16 H 1.08001 * 119.99312 * 354.97465 * 15 14 13 17 17 C 1.38635 * 120.00363 * 174.97915 * 15 14 13 18 18 N 1.31567 * 119.99707 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00212 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47163 * 59.99712 * 19 17 15 21 21 H 1.48498 * 109.47520 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47230 * 299.99979 * 19 17 15 23 23 H 1.09003 * 109.47178 * 299.99820 * 1 2 3 24 24 H 1.09000 * 109.47124 * 60.00244 * 1 2 3 25 25 H 1.09002 * 109.47043 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46989 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47005 * 299.99829 * 3 2 1 28 28 H 1.08999 * 109.47207 * 59.99349 * 3 2 1 29 29 H 1.08997 * 109.47354 * 299.99447 * 4 2 1 30 30 H 1.09000 * 109.47157 * 60.00077 * 4 2 1 31 31 H 1.09000 * 109.46876 * 180.02562 * 4 2 1 32 32 H 0.96998 * 119.99407 * 5.55139 * 7 5 2 33 33 H 1.07991 * 120.00499 * 0.02562 * 9 8 7 34 34 H 1.07998 * 119.90029 * 180.02562 * 10 9 8 35 35 H 1.08000 * 119.89498 * 179.71811 * 11 10 9 36 36 H 1.07998 * 119.99964 * 179.97438 * 12 11 10 37 37 H 0.97006 * 119.99633 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2441 -1.1717 2.0287 7 7 3.3574 -0.8331 1.4441 8 6 3.8251 -1.5918 2.5235 9 6 3.0400 -2.6052 3.0537 10 6 3.5036 -3.3525 4.1196 11 6 4.7498 -3.0932 4.6617 12 6 5.5386 -2.0859 4.1403 13 6 5.0819 -1.3311 3.0695 14 8 5.8552 -0.3403 2.5558 15 6 7.0986 -0.2105 3.0602 16 1 7.4104 -0.8242 3.8924 17 6 7.9769 0.7108 2.5109 18 7 7.5971 1.4581 1.4968 19 14 9.6995 0.8912 3.2104 20 1 10.4186 -0.4029 3.0951 21 1 10.4346 1.9357 2.4528 22 1 9.6147 1.2847 4.6398 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6767 -1.7490 -1.2491 30 1 1.6766 -0.2075 -2.1392 31 1 3.1300 -0.7217 -1.2489 32 1 3.9869 -0.3957 0.8498 33 1 2.0666 -2.8102 2.6334 34 1 2.8912 -4.1414 4.5308 35 1 5.1053 -3.6773 5.4976 36 1 6.5107 -1.8860 4.5663 37 1 8.2115 2.1030 1.1127 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037408481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:51 Heat of formation + Delta-G solvation = -66.717482 kcal Electronic energy + Delta-G solvation = -20022.050832 eV Core-core repulsion = 16957.077022 eV Total energy + Delta-G solvation = -3064.973810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.83386 -40.38921 -38.13648 -36.62800 -35.68543 -34.24310 -30.92828 -30.18706 -28.27762 -28.03206 -27.33244 -24.91622 -23.44357 -22.53423 -20.32393 -19.82129 -19.24156 -17.78628 -17.65508 -16.58361 -16.31437 -15.97154 -15.70661 -15.49220 -15.38130 -14.93132 -14.68290 -14.54977 -14.18427 -13.55552 -13.36279 -13.20089 -13.08634 -12.87818 -12.67592 -12.65247 -12.58519 -12.36111 -12.16167 -11.93920 -11.89971 -11.47047 -11.36852 -10.77629 -10.53064 -9.38528 -8.68800 -8.45302 -6.10735 0.42623 0.67116 1.37534 1.46817 1.51836 1.63454 2.12677 2.20651 2.85374 3.18322 3.35805 3.53656 3.80044 3.89563 4.12181 4.23913 4.27753 4.50585 4.60423 4.68283 4.68672 4.79462 4.82518 4.90267 4.92943 4.98731 5.09068 5.10268 5.18602 5.28161 5.35052 5.44419 5.50357 5.68798 5.74905 6.00379 6.20261 6.50478 6.99531 7.11698 7.74463 8.76019 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018237 B = 0.006600 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.956292 B = 4241.438430 C = 5555.727840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.079 4.079 3 C -0.141 4.141 4 C -0.138 4.138 5 C 0.511 3.489 6 O -0.563 6.563 7 N -0.651 5.651 8 C 0.059 3.941 9 C -0.099 4.099 10 C -0.175 4.175 11 C -0.085 4.085 12 C -0.228 4.228 13 C 0.094 3.906 14 O -0.219 6.219 15 C -0.413 4.413 16 H 0.099 0.901 17 C -0.015 4.015 18 N -0.912 5.912 19 Si 1.013 2.987 20 H -0.259 1.259 21 H -0.273 1.273 22 H -0.262 1.262 23 H 0.048 0.952 24 H 0.093 0.907 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.100 0.900 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.053 0.947 32 H 0.413 0.587 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.128 0.872 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.984 -3.818 -3.339 9.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.082 4.082 3 C -0.199 4.199 4 C -0.195 4.195 5 C 0.301 3.699 6 O -0.442 6.442 7 N -0.294 5.294 8 C -0.036 4.036 9 C -0.119 4.119 10 C -0.194 4.194 11 C -0.104 4.104 12 C -0.248 4.248 13 C 0.042 3.958 14 O -0.125 6.125 15 C -0.489 4.489 16 H 0.117 0.883 17 C -0.214 4.214 18 N -0.550 5.550 19 Si 0.833 3.167 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.186 1.186 23 H 0.067 0.933 24 H 0.111 0.889 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.072 0.928 32 H 0.249 0.751 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.146 0.854 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.522 -3.792 -3.143 9.843 hybrid contribution 1.305 0.480 0.198 1.404 sum -7.217 -3.312 -2.945 8.470 Atomic orbital electron populations 1.21646 0.90619 1.02659 1.02852 1.20880 0.98801 0.96505 0.92017 1.21901 1.00984 0.93271 1.03705 1.21885 1.01142 1.00580 0.95925 1.21505 0.80945 0.79182 0.88254 1.90570 1.55793 1.50123 1.47748 1.43397 1.08095 1.49681 1.28178 1.17355 0.93623 0.97661 0.94942 1.21164 0.99701 0.93225 0.97832 1.21061 0.97204 1.02520 0.98635 1.21172 0.93700 0.96075 0.99450 1.21203 1.02777 1.00911 0.99879 1.19560 0.91747 0.90474 0.94044 1.83858 1.25424 1.44704 1.58544 1.21713 0.86972 1.23366 1.16849 0.88322 1.26405 1.03751 0.94926 0.96290 1.70133 1.37995 1.22878 1.23964 0.84713 0.74760 0.78869 0.78334 1.18353 1.19713 1.18628 0.93280 0.88862 0.92493 0.93212 0.88157 0.93149 0.92074 0.88321 0.92827 0.75071 0.84321 0.83427 0.83320 0.85388 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 7.76 71.98 0.56 -2.18 16 2 C -0.08 -2.09 0.87 -52.93 -0.05 -2.14 16 3 C -0.14 -3.60 8.37 71.98 0.60 -3.00 16 4 C -0.14 -3.04 8.38 71.98 0.60 -2.44 16 5 C 0.51 18.63 6.29 87.66 0.55 19.18 16 6 O -0.56 -23.13 13.15 -3.09 -0.04 -23.17 16 7 N -0.65 -26.52 5.06 -303.09 -1.53 -28.05 16 8 C 0.06 2.65 6.45 38.26 0.25 2.90 16 9 C -0.10 -3.98 8.72 22.37 0.20 -3.79 16 10 C -0.18 -6.11 10.04 22.29 0.22 -5.89 16 11 C -0.09 -3.03 10.04 22.28 0.22 -2.81 16 12 C -0.23 -9.94 9.16 22.37 0.21 -9.74 16 13 C 0.09 4.63 6.67 22.69 0.15 4.78 16 14 O -0.22 -12.40 9.17 -22.85 -0.21 -12.61 16 15 C -0.41 -23.04 9.49 67.91 0.64 -22.39 16 16 H 0.10 5.10 5.20 -2.91 -0.02 5.08 16 17 C -0.02 -0.83 5.49 84.83 0.47 -0.36 16 18 N -0.91 -52.66 13.67 21.61 0.30 -52.37 16 19 Si 1.01 41.39 29.55 68.60 2.03 43.42 16 20 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 23 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 24 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 26 H 0.05 1.45 7.45 -2.39 -0.02 1.44 16 27 H 0.10 1.87 8.14 -2.39 -0.02 1.86 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.30 7.70 -2.39 -0.02 1.28 16 32 H 0.41 16.96 7.21 -92.71 -0.67 16.29 16 33 H 0.14 5.52 5.79 -2.91 -0.02 5.50 16 34 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 35 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.13 5.53 5.63 -2.91 -0.02 5.51 16 37 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 Total: -1.00 -68.02 309.97 5.58 -62.45 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: 0.41 Total: 38.20 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 4.62 Total: -27.87 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -1.24 Total: -80.42 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -0.25 Total: -35.78 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -68.02 5.58 -62.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037408481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.270 kcal (2) G-P(sol) polarization free energy of solvation -68.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds