Wall clock time and date at job start Mon Mar 30 2020 06:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47072 * 2 1 4 4 C 1.50700 * 109.47209 * 119.99933 * 2 1 3 5 5 H 1.07998 * 120.00218 * 24.78568 * 4 2 1 6 6 C 1.37880 * 119.99897 * 204.78022 * 4 2 1 7 7 N 1.31515 * 120.00180 * 353.56750 * 6 4 2 8 8 Si 1.86803 * 119.99918 * 173.29717 * 6 4 2 9 9 H 1.48503 * 109.47080 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47417 * 119.99785 * 8 6 4 11 11 H 1.48501 * 109.46850 * 239.99986 * 8 6 4 12 12 N 1.46499 * 109.47045 * 240.00020 * 2 1 3 13 13 C 1.39924 * 120.00115 * 84.99968 * 12 2 1 14 14 C 1.38870 * 119.96943 * 359.72744 * 13 12 2 15 15 C 1.38297 * 120.13823 * 179.71750 * 14 13 12 16 16 C 1.38453 * 119.80916 * 0.53596 * 15 14 13 17 17 C 1.38758 * 120.19066 * 359.77076 * 16 15 14 18 18 C 1.38426 * 120.13654 * 359.94227 * 17 16 15 19 19 O 1.36469 * 119.61222 * 179.97438 * 17 16 15 20 20 C 1.42899 * 115.94039 * 68.34294 * 19 17 16 21 21 C 1.52065 * 110.76904 * 275.56296 * 20 19 17 22 22 C 1.52068 * 112.36808 * 64.79019 * 21 20 19 23 23 O 1.36583 * 120.23828 * 179.75077 * 16 15 14 24 24 H 1.09007 * 109.47378 * 175.59587 * 1 2 3 25 25 H 1.09004 * 109.47409 * 295.59352 * 1 2 3 26 26 H 1.09000 * 109.47490 * 55.59606 * 1 2 3 27 27 H 0.96996 * 119.99492 * 359.76376 * 7 6 4 28 28 H 0.97000 * 120.00415 * 264.99919 * 12 2 1 29 29 H 1.08003 * 119.93088 * 359.96531 * 14 13 12 30 30 H 1.07997 * 120.09509 * 180.25151 * 15 14 13 31 31 H 1.08002 * 120.16301 * 180.02562 * 18 17 16 32 32 H 1.08999 * 109.21436 * 35.89238 * 20 19 17 33 33 H 1.09003 * 109.21658 * 155.22944 * 20 19 17 34 34 H 1.09004 * 108.89764 * 185.53345 * 21 20 19 35 35 H 1.08997 * 108.90576 * 304.14134 * 21 20 19 36 36 H 1.09000 * 109.21244 * 55.51282 * 22 21 20 37 37 H 1.08996 * 109.21310 * 174.84085 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 1.4118 -1.4460 1.7205 6 6 3.2842 -0.4212 1.7306 7 7 4.0894 0.3783 1.0658 8 14 3.8338 -1.1592 3.3563 9 1 2.7492 -2.0126 3.9044 10 1 5.0506 -1.9825 3.1401 11 1 4.1384 -0.0686 4.3171 12 7 2.0182 -0.6906 -1.1962 13 6 2.1519 0.0074 -2.4015 14 6 1.8161 1.3534 -2.4646 15 6 1.9523 2.0481 -3.6526 16 6 2.4142 1.3951 -4.7827 17 6 2.7445 0.0487 -4.7245 18 6 2.6149 -0.6480 -3.5354 19 8 3.1982 -0.5834 -5.8457 20 6 4.4875 -0.1806 -6.3120 21 6 4.3813 1.0572 -7.1890 22 6 3.8872 2.2716 -6.4186 23 8 2.5473 2.0715 -5.9618 24 1 -0.3634 -1.0247 -0.0789 25 1 -0.3634 0.4439 0.9268 26 1 -0.3634 0.5806 -0.8479 27 1 3.8038 0.7619 0.2219 28 1 2.2490 -1.6318 -1.1527 29 1 1.4515 1.8597 -1.5830 30 1 1.6948 3.0959 -3.6998 31 1 2.8723 -1.6959 -3.4895 32 1 5.1257 0.0397 -5.4563 33 1 4.9300 -0.9925 -6.8892 34 1 5.3634 1.2793 -7.6065 35 1 3.6888 0.8530 -8.0056 36 1 4.5376 2.4410 -5.5604 37 1 3.9177 3.1457 -7.0690 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:13 Heat of formation + Delta-G solvation = -59.136912 kcal Electronic energy + Delta-G solvation = -19989.886370 eV Core-core repulsion = 16925.241278 eV Total energy + Delta-G solvation = -3064.645092 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.37891 -37.94371 -37.05946 -35.32737 -32.89619 -31.93916 -30.46227 -29.09009 -27.09509 -26.02602 -24.70605 -22.64241 -21.76956 -21.35987 -20.20194 -18.16293 -17.37456 -16.74460 -16.42575 -15.48819 -15.14018 -14.98917 -14.16486 -13.90257 -13.85438 -13.65257 -13.48867 -13.20197 -13.07031 -12.58860 -12.34888 -11.69377 -11.47707 -11.27780 -11.13242 -10.92945 -10.86333 -10.61974 -10.28577 -10.23799 -10.16096 -9.55994 -9.08089 -8.75151 -8.64791 -8.25284 -6.64531 -6.46118 -4.42839 1.70839 1.94946 3.32642 3.33399 3.48826 3.71991 3.87763 4.32351 4.37929 4.55269 4.70277 4.81980 5.15988 5.27416 5.35032 5.35637 5.43853 5.63117 5.65832 5.78443 5.90343 5.96368 6.00787 6.19803 6.30181 6.37637 6.48841 6.55536 6.82284 6.88454 6.91581 7.03587 7.09636 7.46941 7.75618 8.02855 8.20316 8.38951 8.59334 8.81019 9.37520 10.76107 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029930 B = 0.004893 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.302308 B = 5721.410164 C = 6017.924739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.238 3.762 3 H 0.045 0.955 4 C -0.609 4.609 5 H 0.057 0.943 6 C 0.031 3.969 7 N -0.889 5.889 8 Si 1.075 2.925 9 H -0.287 1.287 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.713 5.713 13 C 0.247 3.753 14 C -0.200 4.200 15 C -0.062 4.062 16 C -0.031 4.031 17 C 0.116 3.884 18 C -0.218 4.218 19 O -0.326 6.326 20 C 0.063 3.937 21 C -0.183 4.183 22 C 0.055 3.945 23 O -0.318 6.318 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.031 0.969 27 H 0.277 0.723 28 H 0.389 0.611 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.637 1.731 -11.417 11.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.138 3.862 3 H 0.062 0.938 4 C -0.647 4.647 5 H 0.075 0.925 6 C -0.178 4.178 7 N -0.522 5.522 8 Si 0.902 3.098 9 H -0.213 1.213 10 H -0.213 1.213 11 H -0.210 1.210 12 N -0.335 5.335 13 C 0.135 3.865 14 C -0.223 4.223 15 C -0.081 4.081 16 C -0.077 4.077 17 C 0.072 3.928 18 C -0.242 4.242 19 O -0.242 6.242 20 C -0.013 4.013 21 C -0.221 4.221 22 C -0.020 4.020 23 O -0.235 6.235 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.223 0.777 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.572 1.714 -10.326 10.585 hybrid contribution -0.754 -0.267 -1.082 1.346 sum 0.818 1.447 -11.409 11.529 Atomic orbital electron populations 1.22119 0.98709 1.00174 0.99545 1.18947 0.89763 0.94498 0.83009 0.93751 1.22139 1.04458 1.27373 1.10742 0.92498 1.26017 0.93067 0.95314 1.03409 1.70714 1.37221 1.28150 1.16148 0.83465 0.75625 0.76103 0.74585 1.21274 1.21275 1.21015 1.46997 1.67734 1.12206 1.06596 1.18083 0.89988 0.91501 0.86903 1.20604 1.10077 0.93536 0.98102 1.20704 0.98009 0.99190 0.90238 1.18620 1.11984 0.89991 0.87059 1.18735 0.97909 0.90209 0.85947 1.20379 1.12580 1.00837 0.90439 1.86282 1.33972 1.62587 1.41383 1.22523 0.83950 0.97076 0.97709 1.22438 1.02551 0.96388 1.00701 1.22558 0.84246 0.96989 0.98227 1.86416 1.25660 1.74990 1.36409 0.93926 0.92854 0.94956 0.91131 0.77666 0.85446 0.85809 0.85879 0.92530 0.88537 0.89910 0.90311 0.92824 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.40 37.15 0.35 -2.64 16 2 C 0.24 5.51 1.75 -69.09 -0.12 5.39 16 3 H 0.04 1.11 5.43 -51.93 -0.28 0.83 16 4 C -0.61 -15.63 8.50 -34.44 -0.29 -15.92 16 5 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 6 C 0.03 0.82 5.45 -17.82 -0.10 0.72 16 7 N -0.89 -25.13 13.61 55.43 0.75 -24.38 16 8 Si 1.07 23.56 29.91 -169.99 -5.08 18.47 16 9 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.71 -15.35 5.23 -53.23 -0.28 -15.63 16 13 C 0.25 5.01 6.64 -83.68 -0.56 4.46 16 14 C -0.20 -3.88 8.86 -39.33 -0.35 -4.23 16 15 C -0.06 -1.10 10.00 -39.48 -0.39 -1.50 16 16 C -0.03 -0.56 5.73 -39.31 -0.23 -0.78 16 17 C 0.12 2.17 5.73 -39.32 -0.23 1.94 16 18 C -0.22 -4.19 9.85 -39.26 -0.39 -4.58 16 19 O -0.33 -5.62 10.16 -36.71 -0.37 -5.99 16 20 C 0.06 0.81 6.51 36.68 0.24 1.05 16 21 C -0.18 -2.06 5.92 -27.68 -0.16 -2.22 16 22 C 0.06 0.71 6.51 36.68 0.24 0.95 16 23 O -0.32 -5.37 10.17 -37.09 -0.38 -5.75 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.03 0.61 7.63 -51.93 -0.40 0.21 16 27 H 0.28 7.88 6.85 -40.82 -0.28 7.60 16 28 H 0.39 8.27 8.61 -40.82 -0.35 7.92 16 29 H 0.13 2.48 6.01 -52.48 -0.32 2.16 16 30 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 32 H 0.06 0.75 7.93 -51.93 -0.41 0.34 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.69 7.93 -51.93 -0.41 0.28 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 304.42 15.07 4.59 4.59 Total: -1.00 -28.85 304.42 -7.79 -36.64 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.04 Total: 9.40 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -1.98 Total: -17.35 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.48 Total: -40.01 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -0.75 Total: -11.74 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.08 Total: 18.47 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.85 -7.79 -36.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.500 kcal (2) G-P(sol) polarization free energy of solvation -28.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds