Wall clock time and date at job start Mon Mar 30 2020 06:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47072 * 2 1 4 4 C 1.50700 * 109.47209 * 119.99933 * 2 1 3 5 5 H 1.07998 * 120.00218 * 24.78568 * 4 2 1 6 6 C 1.37880 * 119.99897 * 204.78022 * 4 2 1 7 7 N 1.31515 * 120.00180 * 353.56750 * 6 4 2 8 8 Si 1.86803 * 119.99918 * 173.29717 * 6 4 2 9 9 H 1.48503 * 109.47080 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47417 * 119.99785 * 8 6 4 11 11 H 1.48501 * 109.46850 * 239.99986 * 8 6 4 12 12 N 1.46499 * 109.47045 * 240.00020 * 2 1 3 13 13 C 1.39924 * 120.00115 * 84.99968 * 12 2 1 14 14 C 1.38870 * 119.96943 * 359.72744 * 13 12 2 15 15 C 1.38297 * 120.13823 * 179.71750 * 14 13 12 16 16 C 1.38453 * 119.80916 * 0.53596 * 15 14 13 17 17 C 1.38758 * 120.19066 * 359.77076 * 16 15 14 18 18 C 1.38426 * 120.13654 * 359.94227 * 17 16 15 19 19 O 1.36469 * 119.61222 * 179.97438 * 17 16 15 20 20 C 1.42899 * 115.94039 * 68.34294 * 19 17 16 21 21 C 1.52065 * 110.76904 * 275.56296 * 20 19 17 22 22 C 1.52068 * 112.36808 * 64.79019 * 21 20 19 23 23 O 1.36583 * 120.23828 * 179.75077 * 16 15 14 24 24 H 1.09007 * 109.47378 * 175.59587 * 1 2 3 25 25 H 1.09004 * 109.47409 * 295.59352 * 1 2 3 26 26 H 1.09000 * 109.47490 * 55.59606 * 1 2 3 27 27 H 0.96996 * 119.99492 * 359.76376 * 7 6 4 28 28 H 0.97000 * 120.00415 * 264.99919 * 12 2 1 29 29 H 1.08003 * 119.93088 * 359.96531 * 14 13 12 30 30 H 1.07997 * 120.09509 * 180.25151 * 15 14 13 31 31 H 1.08002 * 120.16301 * 180.02562 * 18 17 16 32 32 H 1.08999 * 109.21436 * 35.89238 * 20 19 17 33 33 H 1.09003 * 109.21658 * 155.22944 * 20 19 17 34 34 H 1.09004 * 108.89764 * 185.53345 * 21 20 19 35 35 H 1.08997 * 108.90576 * 304.14134 * 21 20 19 36 36 H 1.09000 * 109.21244 * 55.51282 * 22 21 20 37 37 H 1.08996 * 109.21310 * 174.84085 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 1.4118 -1.4460 1.7205 6 6 3.2842 -0.4212 1.7306 7 7 4.0894 0.3783 1.0658 8 14 3.8338 -1.1592 3.3563 9 1 2.7492 -2.0126 3.9044 10 1 5.0506 -1.9825 3.1401 11 1 4.1384 -0.0686 4.3171 12 7 2.0182 -0.6906 -1.1962 13 6 2.1519 0.0074 -2.4015 14 6 1.8161 1.3534 -2.4646 15 6 1.9523 2.0481 -3.6526 16 6 2.4142 1.3951 -4.7827 17 6 2.7445 0.0487 -4.7245 18 6 2.6149 -0.6480 -3.5354 19 8 3.1982 -0.5834 -5.8457 20 6 4.4875 -0.1806 -6.3120 21 6 4.3813 1.0572 -7.1890 22 6 3.8872 2.2716 -6.4186 23 8 2.5473 2.0715 -5.9618 24 1 -0.3634 -1.0247 -0.0789 25 1 -0.3634 0.4439 0.9268 26 1 -0.3634 0.5806 -0.8479 27 1 3.8038 0.7619 0.2219 28 1 2.2490 -1.6318 -1.1527 29 1 1.4515 1.8597 -1.5830 30 1 1.6948 3.0959 -3.6998 31 1 2.8723 -1.6959 -3.4895 32 1 5.1257 0.0397 -5.4563 33 1 4.9300 -0.9925 -6.8892 34 1 5.3634 1.2793 -7.6065 35 1 3.6888 0.8530 -8.0056 36 1 4.5376 2.4410 -5.5604 37 1 3.9177 3.1457 -7.0690 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:13 Heat of formation + Delta-G solvation = -76.272039 kcal Electronic energy + Delta-G solvation = -19990.629405 eV Core-core repulsion = 16925.241278 eV Total energy + Delta-G solvation = -3065.388126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.70565 -39.43665 -38.33455 -36.95934 -34.45212 -33.34975 -32.05852 -30.60617 -28.52376 -27.23054 -26.64848 -24.07834 -23.35419 -22.48276 -21.79057 -19.52426 -19.14151 -18.17421 -17.76662 -17.03996 -16.37613 -16.27114 -15.78423 -15.57549 -15.29374 -15.03329 -14.87284 -14.61188 -14.29422 -14.20498 -13.72622 -13.38555 -12.90564 -12.83405 -12.68644 -12.61735 -12.20307 -11.96066 -11.87198 -11.76042 -11.31899 -10.88439 -10.79212 -10.70371 -10.40644 -9.70879 -8.71101 -8.06518 -6.50273 0.25571 0.49361 1.55327 1.60698 1.79037 2.37955 2.52943 2.60144 2.76341 3.06464 3.37961 3.75872 3.81361 3.96634 4.23160 4.26009 4.37987 4.41714 4.44082 4.46798 4.54907 4.68226 4.75176 4.76529 4.81700 4.92404 5.00673 5.10045 5.22513 5.34896 5.38212 5.43634 5.54039 5.85254 6.15115 6.21163 6.48616 6.66587 6.75734 7.11098 7.37456 8.68571 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029930 B = 0.004893 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.302308 B = 5721.410164 C = 6017.924739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.242 3.758 3 H 0.021 0.979 4 C -0.616 4.616 5 H 0.053 0.947 6 C -0.014 4.014 7 N -0.919 5.919 8 Si 1.119 2.881 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.280 1.280 12 N -0.720 5.720 13 C 0.230 3.770 14 C -0.210 4.210 15 C -0.061 4.061 16 C -0.026 4.026 17 C 0.113 3.887 18 C -0.224 4.224 19 O -0.342 6.342 20 C 0.050 3.950 21 C -0.177 4.177 22 C 0.045 3.955 23 O -0.333 6.333 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.264 0.736 28 H 0.388 0.612 29 H 0.121 0.879 30 H 0.148 0.852 31 H 0.128 0.872 32 H 0.051 0.949 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.045 1.879 -12.705 12.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.141 3.859 3 H 0.039 0.961 4 C -0.655 4.655 5 H 0.071 0.929 6 C -0.217 4.217 7 N -0.554 5.554 8 Si 0.942 3.058 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.206 1.206 12 N -0.344 5.344 13 C 0.120 3.880 14 C -0.233 4.233 15 C -0.080 4.080 16 C -0.072 4.072 17 C 0.068 3.932 18 C -0.248 4.248 19 O -0.259 6.259 20 C -0.024 4.024 21 C -0.215 4.215 22 C -0.030 4.030 23 O -0.250 6.250 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.222 0.778 29 H 0.139 0.861 30 H 0.165 0.835 31 H 0.146 0.854 32 H 0.069 0.931 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.972 1.872 -11.657 11.970 hybrid contribution -0.857 -0.266 -0.900 1.271 sum 1.116 1.606 -12.557 12.709 Atomic orbital electron populations 1.22001 0.96738 1.00590 1.00265 1.18772 0.91261 0.92998 0.82913 0.96103 1.22417 1.04324 1.27013 1.11729 0.92861 1.27276 0.93490 0.95057 1.05831 1.70830 1.38016 1.30222 1.16330 0.82886 0.75779 0.75785 0.71373 1.19517 1.21011 1.20556 1.46475 1.69214 1.12019 1.06721 1.18179 0.91149 0.91932 0.86705 1.20647 1.10625 0.93366 0.98648 1.20913 0.97315 1.00229 0.89549 1.18761 1.10812 0.90056 0.87610 1.18829 0.97739 0.90412 0.86189 1.20453 1.12617 1.01182 0.90584 1.86243 1.35954 1.63056 1.40642 1.22911 0.82034 0.99271 0.98152 1.22423 1.04575 0.94647 0.99853 1.22919 0.82182 0.99099 0.98798 1.86367 1.28361 1.74713 1.35580 0.93640 0.92475 0.93782 0.92515 0.77812 0.86068 0.83480 0.85443 0.93070 0.85658 0.86107 0.90363 0.93136 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.58 9.40 71.98 0.68 -4.90 16 2 C 0.24 11.43 1.75 44.24 0.08 11.51 16 3 H 0.02 1.09 5.43 -2.39 -0.01 1.08 16 4 C -0.62 -32.01 8.50 25.60 0.22 -31.79 16 5 H 0.05 2.75 7.82 -2.91 -0.02 2.73 16 6 C -0.01 -0.74 5.45 84.66 0.46 -0.28 16 7 N -0.92 -53.06 13.61 21.45 0.29 -52.76 16 8 Si 1.12 47.39 29.91 68.60 2.05 49.44 16 9 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 10 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 12 N -0.72 -31.79 5.23 -322.33 -1.68 -33.47 16 13 C 0.23 9.50 6.64 38.16 0.25 9.75 16 14 C -0.21 -8.23 8.86 22.44 0.20 -8.03 16 15 C -0.06 -2.13 10.00 22.33 0.22 -1.91 16 16 C -0.03 -0.94 5.73 22.45 0.13 -0.81 16 17 C 0.11 4.14 5.73 22.44 0.13 4.27 16 18 C -0.22 -8.68 9.85 22.48 0.22 -8.46 16 19 O -0.34 -11.35 10.16 -84.17 -0.85 -12.21 16 20 C 0.05 1.20 6.51 71.67 0.47 1.66 16 21 C -0.18 -3.40 5.92 29.98 0.18 -3.22 16 22 C 0.04 1.02 6.51 71.67 0.47 1.49 16 23 O -0.33 -10.59 10.17 -85.51 -0.87 -11.46 16 24 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 25 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.04 1.65 7.63 -2.39 -0.02 1.63 16 27 H 0.26 15.55 6.85 -92.71 -0.64 14.92 16 28 H 0.39 16.97 8.61 -92.71 -0.80 16.17 16 29 H 0.12 4.85 6.01 -2.91 -0.02 4.83 16 30 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 31 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 32 H 0.05 1.27 7.93 -2.39 -0.02 1.25 16 33 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.05 1.19 7.93 -2.39 -0.02 1.17 16 37 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -62.20 304.42 3.05 -59.15 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.41 Total: 32.03 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: 3.70 Total: -30.73 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -1.39 Total: -86.23 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -1.72 Total: -23.66 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.05 Total: 49.44 kcal Total: -62.20 3.05 -59.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.118 kcal (2) G-P(sol) polarization free energy of solvation -62.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds