Wall clock time and date at job start Mon Mar 30 2020 06:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46974 * 2 1 4 4 C 1.50698 * 109.47309 * 239.99412 * 2 1 3 5 5 H 1.07993 * 120.00284 * 240.00088 * 4 2 1 6 6 C 1.37886 * 119.99713 * 60.00158 * 4 2 1 7 7 N 1.31517 * 120.00127 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99871 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47285 * 90.00102 * 8 6 4 10 10 H 1.48508 * 109.47211 * 210.00149 * 8 6 4 11 11 H 1.48500 * 109.47505 * 330.00213 * 8 6 4 12 12 N 1.46499 * 109.46832 * 119.99742 * 2 1 3 13 13 C 1.39924 * 120.00137 * 274.99928 * 12 2 1 14 14 C 1.38865 * 119.96625 * 0.02562 * 13 12 2 15 15 C 1.38304 * 120.13469 * 179.97438 * 14 13 12 16 16 C 1.38451 * 119.80824 * 0.02562 * 15 14 13 17 17 C 1.38750 * 120.19435 * 0.03301 * 16 15 14 18 18 C 1.38424 * 120.13635 * 359.94165 * 17 16 15 19 19 O 1.36469 * 119.61363 * 179.97438 * 17 16 15 20 20 C 1.42900 * 115.93963 * 68.34274 * 19 17 16 21 21 C 1.52067 * 110.76615 * 275.56301 * 20 19 17 22 22 C 1.52054 * 112.37054 * 64.79053 * 21 20 19 23 23 O 1.36593 * 120.23319 * 180.02562 * 16 15 14 24 24 H 1.09004 * 109.46974 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47450 * 300.00028 * 1 2 3 26 26 H 1.09001 * 109.46802 * 60.00780 * 1 2 3 27 27 H 0.96992 * 120.00241 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00268 * 95.00005 * 12 2 1 29 29 H 1.07994 * 119.93564 * 359.66484 * 14 13 12 30 30 H 1.08003 * 120.09752 * 180.02562 * 15 14 13 31 31 H 1.08004 * 120.16775 * 180.02562 * 18 17 16 32 32 H 1.09000 * 109.21496 * 35.88829 * 20 19 17 33 33 H 1.09000 * 109.21983 * 155.22578 * 20 19 17 34 34 H 1.09008 * 108.89844 * 185.53532 * 21 20 19 35 35 H 1.08997 * 108.90130 * 304.13590 * 21 20 19 36 36 H 1.09007 * 109.21862 * 55.51487 * 22 21 20 37 37 H 1.09005 * 109.21820 * 174.83959 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3226 -1.1197 -4.0078 9 1 1.3450 -2.1617 -4.4122 10 1 2.4875 -0.1404 -5.1120 11 1 3.6309 -1.7568 -3.7118 12 7 2.0183 -0.6906 1.1962 13 6 2.1519 0.0075 2.4015 14 6 1.8210 1.3547 2.4632 15 6 1.9512 2.0480 3.6528 16 6 2.4132 1.3950 4.7829 17 6 2.7458 0.0492 4.7242 18 6 2.6161 -0.6476 3.5351 19 8 3.2005 -0.5826 5.8451 20 6 2.2465 -0.7575 6.8945 21 6 2.1675 0.4873 7.7644 22 6 1.6401 1.6930 7.0027 23 8 2.5447 2.0710 5.9624 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 0.7096 1.1617 -3.4844 28 1 2.2490 -1.6317 1.1528 29 1 1.4660 1.8635 1.5792 30 1 1.6933 3.0957 3.7002 31 1 2.8745 -1.6952 3.4890 32 1 1.2666 -0.9539 6.4594 33 1 2.5419 -1.6072 7.5100 34 1 1.5079 0.2867 8.6087 35 1 3.1636 0.7179 8.1421 36 1 0.6728 1.4459 6.5651 37 1 1.5179 2.5280 7.6928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871148.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:16 Heat of formation + Delta-G solvation = -51.018902 kcal Electronic energy + Delta-G solvation = -19748.362227 eV Core-core repulsion = 16684.069159 eV Total energy + Delta-G solvation = -3064.293068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.44515 -37.97023 -37.12164 -35.21693 -33.00842 -32.08150 -30.33568 -28.84897 -27.10765 -26.05712 -25.24577 -22.68093 -21.72785 -21.41941 -19.99613 -18.24362 -17.16128 -16.58421 -16.51049 -15.28094 -15.21017 -15.13828 -14.70983 -13.97168 -13.87858 -13.56375 -13.46067 -13.23216 -12.63293 -12.50146 -12.31696 -11.66032 -11.48145 -11.20626 -11.06776 -11.00743 -10.74822 -10.65139 -10.32320 -10.29777 -10.17260 -9.68614 -9.18768 -9.02428 -8.53862 -8.30745 -6.58469 -6.20156 -4.28476 1.64925 1.87440 3.20844 3.28116 3.30915 3.65772 3.82285 4.19781 4.35117 4.57830 4.64250 4.76206 5.09655 5.12698 5.27115 5.28681 5.36305 5.56942 5.61193 5.75421 5.84334 5.91284 5.96127 6.22608 6.43619 6.66457 6.78377 6.83692 6.89021 6.95715 7.00730 7.34869 7.41461 7.61245 7.77659 7.96665 8.01855 8.27461 8.61992 8.84244 9.38902 10.85694 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.045003 B = 0.004168 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.033432 B = 6715.806485 C = 7023.348878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.265 3.735 3 H 0.042 0.958 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.719 5.719 13 C 0.249 3.751 14 C -0.194 4.194 15 C -0.063 4.063 16 C -0.027 4.027 17 C 0.114 3.886 18 C -0.218 4.218 19 O -0.325 6.325 20 C 0.063 3.937 21 C -0.184 4.184 22 C 0.056 3.944 23 O -0.317 6.317 24 H 0.029 0.971 25 H 0.014 0.986 26 H 0.090 0.910 27 H 0.265 0.735 28 H 0.391 0.609 29 H 0.136 0.864 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.915 -0.502 15.996 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.060 0.940 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.341 5.341 13 C 0.138 3.862 14 C -0.217 4.217 15 C -0.083 4.083 16 C -0.072 4.072 17 C 0.070 3.930 18 C -0.242 4.242 19 O -0.241 6.241 20 C -0.012 4.012 21 C -0.222 4.222 22 C -0.020 4.020 23 O -0.234 6.234 24 H 0.048 0.952 25 H 0.033 0.967 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.225 0.775 29 H 0.153 0.847 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.772 -0.211 15.690 15.711 hybrid contribution 0.037 -0.926 -0.762 1.200 sum -0.735 -1.136 14.928 14.990 Atomic orbital electron populations 1.22194 0.98694 0.99608 1.00671 1.18783 0.90749 0.93555 0.80606 0.93998 1.21198 1.32264 1.13302 0.90219 0.92070 1.24869 0.94743 0.94948 0.99069 1.69867 1.36041 1.22473 1.24005 0.86435 0.79250 0.79301 0.82088 1.20545 1.21006 1.19816 1.45698 1.68876 1.12188 1.07296 1.17866 0.90566 0.91381 0.86377 1.20769 1.09105 0.93231 0.98616 1.20750 0.96341 0.99680 0.91484 1.18674 1.10529 0.90964 0.87068 1.18706 0.97674 0.89816 0.86823 1.20347 1.11594 1.00300 0.91918 1.86300 1.36480 1.77386 1.23939 1.22521 0.92794 0.97269 0.88635 1.22444 1.03605 0.96396 0.99726 1.22549 0.92234 0.97207 0.89968 1.86427 1.56729 1.60402 1.19851 0.95217 0.96720 0.89115 0.92525 0.77530 0.84659 0.85594 0.85725 0.92623 0.88531 0.89914 0.90241 0.92882 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.21 37.16 0.34 -3.18 16 2 C 0.27 6.29 2.25 -69.08 -0.16 6.14 16 3 H 0.04 1.08 6.48 -51.93 -0.34 0.75 16 4 C -0.53 -13.75 8.73 -34.44 -0.30 -14.05 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -23.91 11.32 55.43 0.63 -23.28 16 8 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.72 -14.71 5.25 -53.23 -0.28 -14.99 16 13 C 0.25 4.76 6.64 -83.68 -0.56 4.20 16 14 C -0.19 -3.63 8.85 -39.33 -0.35 -3.98 16 15 C -0.06 -1.07 10.00 -39.48 -0.39 -1.47 16 16 C -0.03 -0.46 5.73 -39.31 -0.23 -0.68 16 17 C 0.11 1.99 5.73 -39.32 -0.23 1.76 16 18 C -0.22 -3.84 9.85 -39.26 -0.39 -4.23 16 19 O -0.32 -5.22 10.16 -36.71 -0.37 -5.59 16 20 C 0.06 0.73 6.51 36.68 0.24 0.97 16 21 C -0.18 -1.87 5.92 -27.69 -0.16 -2.03 16 22 C 0.06 0.66 6.51 36.68 0.24 0.89 16 23 O -0.32 -5.08 10.17 -37.12 -0.38 -5.46 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.01 0.30 7.71 -51.93 -0.40 -0.10 16 26 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 27 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.39 7.48 8.55 -40.82 -0.35 7.13 16 29 H 0.14 2.64 6.10 -52.49 -0.32 2.32 16 30 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 31 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 32 H 0.06 0.63 7.93 -51.93 -0.41 0.22 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.60 7.93 -51.93 -0.41 0.19 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 302.64 15.07 4.56 4.56 Total: -1.00 -28.21 302.64 -7.94 -36.14 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.05 Total: 7.27 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -2.03 Total: -14.00 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.35 Total: -38.27 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.75 Total: -11.05 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.21 -7.94 -36.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871148.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.874 kcal (2) G-P(sol) polarization free energy of solvation -28.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds