Wall clock time and date at job start Mon Mar 30 2020 06:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46974 * 2 1 4 4 C 1.50698 * 109.47309 * 239.99412 * 2 1 3 5 5 H 1.07993 * 120.00284 * 240.00088 * 4 2 1 6 6 C 1.37886 * 119.99713 * 60.00158 * 4 2 1 7 7 N 1.31517 * 120.00127 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99871 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47285 * 90.00102 * 8 6 4 10 10 H 1.48508 * 109.47211 * 210.00149 * 8 6 4 11 11 H 1.48500 * 109.47505 * 330.00213 * 8 6 4 12 12 N 1.46499 * 109.46832 * 119.99742 * 2 1 3 13 13 C 1.39924 * 120.00137 * 274.99928 * 12 2 1 14 14 C 1.38865 * 119.96625 * 0.02562 * 13 12 2 15 15 C 1.38304 * 120.13469 * 179.97438 * 14 13 12 16 16 C 1.38451 * 119.80824 * 0.02562 * 15 14 13 17 17 C 1.38750 * 120.19435 * 0.03301 * 16 15 14 18 18 C 1.38424 * 120.13635 * 359.94165 * 17 16 15 19 19 O 1.36469 * 119.61363 * 179.97438 * 17 16 15 20 20 C 1.42900 * 115.93963 * 68.34274 * 19 17 16 21 21 C 1.52067 * 110.76615 * 275.56301 * 20 19 17 22 22 C 1.52054 * 112.37054 * 64.79053 * 21 20 19 23 23 O 1.36593 * 120.23319 * 180.02562 * 16 15 14 24 24 H 1.09004 * 109.46974 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47450 * 300.00028 * 1 2 3 26 26 H 1.09001 * 109.46802 * 60.00780 * 1 2 3 27 27 H 0.96992 * 120.00241 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00268 * 95.00005 * 12 2 1 29 29 H 1.07994 * 119.93564 * 359.66484 * 14 13 12 30 30 H 1.08003 * 120.09752 * 180.02562 * 15 14 13 31 31 H 1.08004 * 120.16775 * 180.02562 * 18 17 16 32 32 H 1.09000 * 109.21496 * 35.88829 * 20 19 17 33 33 H 1.09000 * 109.21983 * 155.22578 * 20 19 17 34 34 H 1.09008 * 108.89844 * 185.53532 * 21 20 19 35 35 H 1.08997 * 108.90130 * 304.13590 * 21 20 19 36 36 H 1.09007 * 109.21862 * 55.51487 * 22 21 20 37 37 H 1.09005 * 109.21820 * 174.83959 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3226 -1.1197 -4.0078 9 1 1.3450 -2.1617 -4.4122 10 1 2.4875 -0.1404 -5.1120 11 1 3.6309 -1.7568 -3.7118 12 7 2.0183 -0.6906 1.1962 13 6 2.1519 0.0075 2.4015 14 6 1.8210 1.3547 2.4632 15 6 1.9512 2.0480 3.6528 16 6 2.4132 1.3950 4.7829 17 6 2.7458 0.0492 4.7242 18 6 2.6161 -0.6476 3.5351 19 8 3.2005 -0.5826 5.8451 20 6 2.2465 -0.7575 6.8945 21 6 2.1675 0.4873 7.7644 22 6 1.6401 1.6930 7.0027 23 8 2.5447 2.0710 5.9624 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 0.7096 1.1617 -3.4844 28 1 2.2490 -1.6317 1.1528 29 1 1.4660 1.8635 1.5792 30 1 1.6933 3.0957 3.7002 31 1 2.8745 -1.6952 3.4890 32 1 1.2666 -0.9539 6.4594 33 1 2.5419 -1.6072 7.5100 34 1 1.5079 0.2867 8.6087 35 1 3.1636 0.7179 8.1421 36 1 0.6728 1.4459 6.5651 37 1 1.5179 2.5280 7.6928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871148.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:16 Heat of formation + Delta-G solvation = -67.518770 kcal Electronic energy + Delta-G solvation = -19749.077715 eV Core-core repulsion = 16684.069159 eV Total energy + Delta-G solvation = -3065.008556 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.67725 -39.37494 -38.30189 -36.81411 -34.58702 -33.34290 -31.86198 -30.38749 -28.49238 -27.31789 -27.06411 -24.02493 -23.25743 -22.44299 -21.57479 -19.51904 -18.76163 -18.01367 -17.79822 -16.92106 -16.65028 -16.28308 -16.15426 -15.39230 -14.99153 -14.83709 -14.79528 -14.50928 -14.26918 -13.99451 -13.68206 -13.39162 -12.92413 -12.75287 -12.72209 -12.52604 -12.26701 -12.18185 -11.92553 -11.71547 -11.27502 -11.11423 -10.85516 -10.65464 -10.38103 -9.67058 -8.21560 -8.06792 -6.33195 0.29140 0.50779 1.42863 1.44339 1.53900 2.35442 2.47093 2.62990 2.85941 3.11269 3.15899 3.80495 3.86098 4.00969 4.27987 4.32302 4.41301 4.45139 4.48024 4.58697 4.69755 4.77421 4.83898 4.97830 4.98254 5.07610 5.14048 5.15392 5.41360 5.42512 5.49062 5.54898 5.66940 5.88364 6.10368 6.25862 6.51124 6.71642 6.82213 7.15039 7.38815 8.86939 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.045003 B = 0.004168 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.033432 B = 6715.806485 C = 7023.348878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.274 3.726 3 H 0.015 0.985 4 C -0.549 4.549 5 H 0.061 0.939 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.964 3.036 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.724 5.724 13 C 0.232 3.768 14 C -0.207 4.207 15 C -0.063 4.063 16 C -0.022 4.022 17 C 0.112 3.888 18 C -0.215 4.215 19 O -0.341 6.341 20 C 0.051 3.949 21 C -0.179 4.179 22 C 0.045 3.955 23 O -0.335 6.335 24 H 0.029 0.971 25 H 0.026 0.974 26 H 0.067 0.933 27 H 0.266 0.734 28 H 0.396 0.604 29 H 0.120 0.880 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.057 0.943 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 -1.098 17.854 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.171 3.829 3 H 0.033 0.967 4 C -0.587 4.587 5 H 0.079 0.921 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.348 5.348 13 C 0.123 3.877 14 C -0.230 4.230 15 C -0.082 4.082 16 C -0.068 4.068 17 C 0.067 3.933 18 C -0.239 4.239 19 O -0.259 6.259 20 C -0.023 4.023 21 C -0.217 4.217 22 C -0.030 4.030 23 O -0.253 6.253 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.231 0.769 29 H 0.138 0.862 30 H 0.163 0.837 31 H 0.155 0.845 32 H 0.076 0.924 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.695 -0.809 17.601 17.633 hybrid contribution 0.019 -0.693 -1.104 1.304 sum -0.675 -1.502 16.497 16.579 Atomic orbital electron populations 1.22002 0.98427 0.99290 1.00075 1.18432 0.90865 0.92220 0.81419 0.96725 1.21530 1.32354 1.13461 0.91349 0.92095 1.25632 0.94924 0.95605 1.01783 1.69984 1.36876 1.23571 1.24582 0.85467 0.78761 0.78232 0.78621 1.19929 1.20851 1.19510 1.45353 1.70203 1.12309 1.06953 1.17980 0.91732 0.91628 0.86329 1.20732 1.10064 0.93391 0.98834 1.20902 0.95925 1.00541 0.90816 1.18806 1.09296 0.90914 0.87789 1.18804 0.97063 0.90054 0.87367 1.20436 1.11059 1.00885 0.91528 1.86263 1.38066 1.77253 1.24280 1.22917 0.92231 0.99239 0.87933 1.22432 1.04201 0.94842 1.00182 1.22914 0.91559 0.99203 0.89283 1.86374 1.58139 1.60692 1.20065 0.95215 0.95476 0.91404 0.92486 0.76940 0.86194 0.83684 0.84547 0.92420 0.85728 0.86105 0.90716 0.92657 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.55 9.21 71.98 0.66 -5.88 16 2 C 0.27 13.35 2.25 44.25 0.10 13.45 16 3 H 0.02 0.80 6.48 -2.39 -0.02 0.79 16 4 C -0.55 -28.80 8.73 25.60 0.22 -28.57 16 5 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 6 C 0.02 1.11 5.30 84.66 0.45 1.56 16 7 N -0.91 -50.07 11.32 21.45 0.24 -49.83 16 8 Si 0.96 41.87 29.54 68.60 2.03 43.90 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 12 N -0.72 -30.11 5.25 -322.32 -1.69 -31.80 16 13 C 0.23 8.94 6.64 38.16 0.25 9.19 16 14 C -0.21 -7.87 8.85 22.44 0.20 -7.67 16 15 C -0.06 -2.10 10.00 22.34 0.22 -1.88 16 16 C -0.02 -0.74 5.73 22.44 0.13 -0.61 16 17 C 0.11 3.76 5.73 22.44 0.13 3.89 16 18 C -0.22 -7.48 9.85 22.48 0.22 -7.26 16 19 O -0.34 -10.34 10.16 -84.17 -0.86 -11.20 16 20 C 0.05 1.04 6.51 71.67 0.47 1.50 16 21 C -0.18 -3.01 5.92 29.97 0.18 -2.83 16 22 C 0.05 0.92 6.51 71.67 0.47 1.39 16 23 O -0.34 -10.09 10.17 -85.63 -0.87 -10.96 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.03 1.15 7.71 -2.39 -0.02 1.14 16 26 H 0.07 3.51 6.07 -2.39 -0.01 3.49 16 27 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 28 H 0.40 15.31 8.55 -92.71 -0.79 14.52 16 29 H 0.12 4.89 6.10 -2.91 -0.02 4.87 16 30 H 0.15 4.17 8.06 -2.91 -0.02 4.14 16 31 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 32 H 0.06 1.16 7.93 -2.39 -0.02 1.14 16 33 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.11 7.93 -2.38 -0.02 1.09 16 37 H 0.12 1.79 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -60.52 302.64 2.84 -57.68 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.29 Total: 25.94 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 3.70 Total: -23.73 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -1.45 Total: -81.63 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -1.73 Total: -22.16 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -60.52 2.84 -57.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871148.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.838 kcal (2) G-P(sol) polarization free energy of solvation -60.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds