Wall clock time and date at job start Mon Mar 30 2020 07:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99919 * 2 1 4 4 C 1.39663 * 120.00275 * 179.97438 * 2 1 3 5 5 C 1.38973 * 120.04649 * 180.02562 * 4 2 1 6 6 C 1.38116 * 120.03003 * 179.97438 * 5 4 2 7 7 C 1.38216 * 120.13578 * 359.74695 * 6 5 4 8 8 C 1.38779 * 120.08401 * 0.51068 * 7 6 5 9 9 O 1.35897 * 120.00949 * 179.76812 * 8 7 6 10 10 C 1.42898 * 117.00481 * 359.71829 * 9 8 7 11 11 C 1.52997 * 109.47319 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 O 1.21433 * 119.99797 * 0.02562 * 12 11 10 14 14 C 1.41022 * 120.00326 * 179.97438 * 12 11 10 15 15 H 1.08006 * 119.99754 * 0.02562 * 14 12 11 16 16 C 1.40463 * 120.00372 * 179.97438 * 14 12 11 17 17 N 1.30522 * 119.99423 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00180 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46871 * 90.00485 * 18 16 14 20 20 H 1.48494 * 109.47145 * 209.99996 * 18 16 14 21 21 H 1.48502 * 109.47227 * 330.00444 * 18 16 14 22 22 C 1.38609 * 119.96517 * 359.48769 * 8 7 6 23 23 H 1.09009 * 109.46900 * 239.99965 * 1 2 3 24 24 H 1.08996 * 109.47177 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.46973 * 120.00404 * 1 2 3 26 26 H 1.08994 * 109.47231 * 270.00347 * 3 2 1 27 27 H 1.09002 * 109.47128 * 29.99911 * 3 2 1 28 28 H 1.08990 * 109.47506 * 149.99639 * 3 2 1 29 29 H 1.07996 * 119.98339 * 359.95966 * 5 4 2 30 30 H 1.08007 * 119.92769 * 180.02562 * 6 5 4 31 31 H 1.07991 * 119.95689 * 180.26971 * 7 6 5 32 32 H 1.09002 * 109.47259 * 300.00417 * 10 9 8 33 33 H 1.09001 * 109.47074 * 60.00439 * 10 9 8 34 34 H 1.09002 * 109.47153 * 300.00307 * 11 10 9 35 35 H 1.08998 * 109.47533 * 59.99936 * 11 10 9 36 36 H 0.97006 * 119.99632 * 179.97438 * 17 16 14 37 37 H 1.08006 * 120.06150 * 180.23058 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1634 -1.2095 0.0005 5 6 3.5531 -1.2105 0.0011 6 6 4.2434 -2.4068 0.0021 7 6 3.5549 -3.6053 0.0080 8 6 2.1671 -3.6103 0.0020 9 8 1.4917 -4.7896 0.0030 10 6 2.2740 -5.9854 0.0040 11 6 1.3462 -7.2019 0.0044 12 6 2.1711 -8.4630 0.0061 13 8 3.3836 -8.3953 0.0074 14 6 1.5352 -9.7217 0.0072 15 1 0.4568 -9.7818 0.0065 16 6 2.3041 -10.8971 0.0082 17 7 3.6073 -10.8243 0.0086 18 14 1.4617 -12.5643 0.0105 19 1 1.2380 -13.0077 -1.3890 20 1 2.3209 -13.5521 0.7113 21 1 0.1565 -12.4585 0.7108 22 6 1.4704 -2.4120 0.0010 23 1 -0.3633 -0.5139 0.8901 24 1 -0.3633 1.0276 0.0005 25 1 -0.3633 -0.5139 -0.8899 26 1 2.3791 1.5834 -1.0276 27 1 1.6084 2.0284 0.5138 28 1 3.1498 1.1385 0.5138 29 1 4.0935 -0.2755 0.0004 30 1 5.3235 -2.4057 0.0030 31 1 4.0975 -4.5389 0.0132 32 1 2.9030 -6.0088 -0.8859 33 1 2.9029 -6.0074 0.8941 34 1 0.7169 -7.1786 0.8941 35 1 0.7176 -7.1797 -0.8858 36 1 4.1384 -11.6361 0.0097 37 1 0.3904 -2.4141 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041258883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:15 Heat of formation + Delta-G solvation = -51.197032 kcal Electronic energy + Delta-G solvation = -18786.345796 eV Core-core repulsion = 15722.045004 eV Total energy + Delta-G solvation = -3064.300793 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.91040 -38.17819 -36.79311 -35.46820 -32.74993 -31.22249 -30.09896 -29.41181 -27.98280 -26.95384 -24.97892 -23.16775 -21.99815 -20.42956 -19.10725 -18.03156 -16.39457 -15.94235 -15.84086 -15.57770 -15.33971 -15.10784 -14.98316 -14.40661 -13.61597 -13.37790 -13.20344 -12.83440 -12.81439 -12.62538 -12.40179 -12.20395 -12.01671 -11.55877 -11.27564 -11.22370 -10.97986 -10.71504 -10.43667 -10.32291 -10.13004 -9.97604 -9.62184 -8.94454 -8.02923 -7.45239 -7.26874 -6.27736 -4.93071 1.68417 1.81198 2.97958 3.04620 3.13407 3.17192 3.76566 4.03846 4.07798 4.20479 4.81897 4.92779 5.09955 5.11037 5.28988 5.40154 5.42947 5.50845 5.51428 5.53712 5.61893 5.76706 5.86388 5.90931 5.98736 6.23088 6.33206 6.51630 6.66012 6.74698 6.84579 6.84689 6.86666 7.21038 7.24103 7.46677 7.91650 8.07011 8.79696 8.84840 10.30514 10.52936 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.052388 B = 0.003200 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.347929 B = 8748.796869 C = 9252.094242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.640 5.640 3 C 0.096 3.904 4 C 0.242 3.758 5 C -0.241 4.241 6 C -0.036 4.036 7 C -0.260 4.260 8 C 0.184 3.816 9 O -0.322 6.322 10 C 0.077 3.923 11 C -0.156 4.156 12 C 0.367 3.633 13 O -0.548 6.548 14 C -0.533 4.533 15 H 0.071 0.929 16 C 0.082 3.918 17 N -0.739 5.739 18 Si 0.907 3.093 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.235 4.235 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.273 0.727 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 19.009 0.084 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.353 5.353 3 C -0.047 4.047 4 C 0.141 3.859 5 C -0.263 4.263 6 C -0.055 4.055 7 C -0.281 4.281 8 C 0.137 3.863 9 O -0.235 6.235 10 C 0.003 3.997 11 C -0.195 4.195 12 C 0.261 3.739 13 O -0.438 6.438 14 C -0.564 4.564 15 H 0.089 0.911 16 C -0.141 4.141 17 N -0.368 5.368 18 Si 0.731 3.269 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.258 4.258 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.148 0.852 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.190 19.128 0.090 19.392 hybrid contribution -0.404 -0.846 -0.019 0.938 sum -3.594 18.281 0.071 18.632 Atomic orbital electron populations 1.21586 0.79582 1.01995 1.01501 1.46247 1.04922 1.03050 1.81052 1.21618 0.97339 0.84781 1.00955 1.17379 0.90842 0.84859 0.92843 1.20481 0.91851 0.98367 1.15613 1.20651 0.99209 0.91304 0.94333 1.21234 0.93294 0.99623 1.13935 1.18741 0.90380 0.85792 0.91420 1.86023 1.37292 1.12840 1.87364 1.22712 0.94194 0.80795 1.01990 1.22109 1.00003 0.94826 1.02521 1.19331 0.88667 0.87357 0.78496 1.90411 1.15609 1.88578 1.49181 1.20755 0.94877 0.91835 1.48958 0.91103 1.26027 0.94495 1.01129 0.92487 1.69957 1.05747 1.29803 1.31288 0.86366 0.80219 0.81119 0.79162 1.19423 1.20211 1.18552 1.19702 0.99706 0.88741 1.17697 0.92740 0.91168 0.92719 0.93625 0.91810 0.91277 0.86378 0.86087 0.85182 0.91824 0.91815 0.90857 0.90855 0.91568 0.85657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 9.40 59.85 0.56 1.41 16 2 N -0.64 -6.98 3.41 -187.58 -0.64 -7.62 16 3 C 0.10 0.75 10.16 59.85 0.61 1.36 16 4 C 0.24 3.34 6.55 -83.81 -0.55 2.79 16 5 C -0.24 -3.18 9.21 -39.35 -0.36 -3.55 16 6 C -0.04 -0.51 10.03 -39.63 -0.40 -0.91 16 7 C -0.26 -4.39 9.04 -39.39 -0.36 -4.75 16 8 C 0.18 3.28 6.68 -39.24 -0.26 3.02 16 9 O -0.32 -6.33 10.13 -19.42 -0.20 -6.53 16 10 C 0.08 1.64 4.03 37.16 0.15 1.79 16 11 C -0.16 -3.54 5.94 -27.89 -0.17 -3.70 16 12 C 0.37 10.23 6.90 -33.26 -0.23 10.00 16 13 O -0.55 -17.08 14.50 5.42 0.08 -17.00 16 14 C -0.53 -14.77 9.22 -37.69 -0.35 -15.12 16 15 H 0.07 1.81 7.85 -52.48 -0.41 1.40 16 16 C 0.08 2.22 5.50 -17.27 -0.10 2.12 16 17 N -0.74 -21.37 11.72 55.57 0.65 -20.72 16 18 Si 0.91 19.43 29.56 -169.99 -5.03 14.41 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 22 C -0.24 -3.68 9.25 -39.24 -0.36 -4.04 16 23 H 0.05 0.48 7.95 -51.92 -0.41 0.07 16 24 H 0.07 0.44 7.79 -51.93 -0.40 0.03 16 25 H 0.05 0.49 7.95 -51.93 -0.41 0.08 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 28 H 0.07 0.52 6.19 -51.93 -0.32 0.20 16 29 H 0.12 1.26 6.14 -52.49 -0.32 0.94 16 30 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 31 H 0.13 2.28 6.29 -52.49 -0.33 1.95 16 32 H 0.06 1.38 7.63 -51.93 -0.40 0.98 16 33 H 0.06 1.38 7.60 -51.93 -0.39 0.99 16 34 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 37 H 0.13 1.82 6.73 -52.48 -0.35 1.47 16 LS Contribution 313.38 15.07 4.72 4.72 Total: -1.00 -32.78 313.38 -7.21 -39.99 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.00 Total: 2.34 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -1.81 Total: -9.59 kcal Atomic # 7 Polarization: -28.35 SS G_CDS: 0.01 Total: -28.34 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.12 Total: -23.53 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.78 -7.21 -39.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041258883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.202 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds