Wall clock time and date at job start Mon Mar 30 2020 07:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99919 * 2 1 4 4 C 1.39663 * 120.00275 * 179.97438 * 2 1 3 5 5 C 1.38973 * 120.04649 * 180.02562 * 4 2 1 6 6 C 1.38116 * 120.03003 * 179.97438 * 5 4 2 7 7 C 1.38216 * 120.13578 * 359.74695 * 6 5 4 8 8 C 1.38779 * 120.08401 * 0.51068 * 7 6 5 9 9 O 1.35897 * 120.00949 * 179.76812 * 8 7 6 10 10 C 1.42898 * 117.00481 * 359.71829 * 9 8 7 11 11 C 1.52997 * 109.47319 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 O 1.21433 * 119.99797 * 0.02562 * 12 11 10 14 14 C 1.41022 * 120.00326 * 179.97438 * 12 11 10 15 15 H 1.08006 * 119.99754 * 0.02562 * 14 12 11 16 16 C 1.40463 * 120.00372 * 179.97438 * 14 12 11 17 17 N 1.30522 * 119.99423 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00180 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46871 * 90.00485 * 18 16 14 20 20 H 1.48494 * 109.47145 * 209.99996 * 18 16 14 21 21 H 1.48502 * 109.47227 * 330.00444 * 18 16 14 22 22 C 1.38609 * 119.96517 * 359.48769 * 8 7 6 23 23 H 1.09009 * 109.46900 * 239.99965 * 1 2 3 24 24 H 1.08996 * 109.47177 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.46973 * 120.00404 * 1 2 3 26 26 H 1.08994 * 109.47231 * 270.00347 * 3 2 1 27 27 H 1.09002 * 109.47128 * 29.99911 * 3 2 1 28 28 H 1.08990 * 109.47506 * 149.99639 * 3 2 1 29 29 H 1.07996 * 119.98339 * 359.95966 * 5 4 2 30 30 H 1.08007 * 119.92769 * 180.02562 * 6 5 4 31 31 H 1.07991 * 119.95689 * 180.26971 * 7 6 5 32 32 H 1.09002 * 109.47259 * 300.00417 * 10 9 8 33 33 H 1.09001 * 109.47074 * 60.00439 * 10 9 8 34 34 H 1.09002 * 109.47153 * 300.00307 * 11 10 9 35 35 H 1.08998 * 109.47533 * 59.99936 * 11 10 9 36 36 H 0.97006 * 119.99632 * 179.97438 * 17 16 14 37 37 H 1.08006 * 120.06150 * 180.23058 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1634 -1.2095 0.0005 5 6 3.5531 -1.2105 0.0011 6 6 4.2434 -2.4068 0.0021 7 6 3.5549 -3.6053 0.0080 8 6 2.1671 -3.6103 0.0020 9 8 1.4917 -4.7896 0.0030 10 6 2.2740 -5.9854 0.0040 11 6 1.3462 -7.2019 0.0044 12 6 2.1711 -8.4630 0.0061 13 8 3.3836 -8.3953 0.0074 14 6 1.5352 -9.7217 0.0072 15 1 0.4568 -9.7818 0.0065 16 6 2.3041 -10.8971 0.0082 17 7 3.6073 -10.8243 0.0086 18 14 1.4617 -12.5643 0.0105 19 1 1.2380 -13.0077 -1.3890 20 1 2.3209 -13.5521 0.7113 21 1 0.1565 -12.4585 0.7108 22 6 1.4704 -2.4120 0.0010 23 1 -0.3633 -0.5139 0.8901 24 1 -0.3633 1.0276 0.0005 25 1 -0.3633 -0.5139 -0.8899 26 1 2.3791 1.5834 -1.0276 27 1 1.6084 2.0284 0.5138 28 1 3.1498 1.1385 0.5138 29 1 4.0935 -0.2755 0.0004 30 1 5.3235 -2.4057 0.0030 31 1 4.0975 -4.5389 0.0132 32 1 2.9030 -6.0088 -0.8859 33 1 2.9029 -6.0074 0.8941 34 1 0.7169 -7.1786 0.8941 35 1 0.7176 -7.1797 -0.8858 36 1 4.1384 -11.6361 0.0097 37 1 0.3904 -2.4141 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041258883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:14 Heat of formation + Delta-G solvation = -71.455290 kcal Electronic energy + Delta-G solvation = -18787.224260 eV Core-core repulsion = 15722.045004 eV Total energy + Delta-G solvation = -3065.179257 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.17543 -39.53941 -38.75446 -36.54515 -34.84299 -32.85198 -31.40216 -30.52544 -29.18967 -28.63009 -26.07882 -24.75198 -23.15911 -21.75244 -20.97252 -19.27706 -18.35956 -17.35063 -17.18480 -17.04864 -16.78154 -16.41074 -15.92548 -15.60310 -15.09586 -14.93851 -14.85748 -14.62787 -13.96892 -13.53001 -13.45368 -13.31536 -13.14553 -12.98197 -12.89319 -12.66397 -12.47620 -12.42336 -12.15325 -12.02149 -11.69713 -11.68444 -10.98878 -10.68745 -9.61882 -9.29672 -8.34118 -8.26160 -7.13273 0.51243 0.61102 1.35491 1.38709 1.55705 1.99590 2.15408 2.21667 2.45314 2.89443 3.33382 3.90570 4.09401 4.09862 4.14532 4.20365 4.27031 4.35959 4.41316 4.49240 4.54298 4.65596 4.72574 4.80321 4.90633 4.92906 4.95055 5.00750 5.01683 5.18422 5.26283 5.46408 5.59552 5.66987 5.95794 6.32212 6.41977 6.54613 6.69336 6.74130 8.20954 8.47099 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.052388 B = 0.003200 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.347929 B = 8748.796869 C = 9252.094242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.640 5.640 3 C 0.088 3.912 4 C 0.243 3.757 5 C -0.234 4.234 6 C -0.035 4.035 7 C -0.286 4.286 8 C 0.152 3.848 9 O -0.330 6.330 10 C 0.096 3.904 11 C -0.146 4.146 12 C 0.342 3.658 13 O -0.594 6.594 14 C -0.560 4.560 15 H 0.089 0.911 16 C 0.025 3.975 17 N -0.788 5.788 18 Si 0.997 3.003 19 H -0.258 1.258 20 H -0.268 1.268 21 H -0.248 1.248 22 C -0.245 4.245 23 H 0.050 0.950 24 H 0.101 0.899 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.151 0.849 30 H 0.146 0.854 31 H 0.110 0.890 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.282 0.718 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 20.445 0.113 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.350 5.350 3 C -0.054 4.054 4 C 0.139 3.861 5 C -0.256 4.256 6 C -0.054 4.054 7 C -0.307 4.307 8 C 0.106 3.894 9 O -0.244 6.244 10 C 0.022 3.978 11 C -0.184 4.184 12 C 0.241 3.759 13 O -0.487 6.487 14 C -0.591 4.591 15 H 0.107 0.893 16 C -0.194 4.194 17 N -0.417 5.417 18 Si 0.816 3.184 19 H -0.183 1.183 20 H -0.193 1.193 21 H -0.171 1.171 22 C -0.269 4.269 23 H 0.069 0.931 24 H 0.119 0.881 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.168 0.832 30 H 0.164 0.836 31 H 0.129 0.871 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.519 20.630 0.118 21.119 hybrid contribution 0.003 -1.076 -0.031 1.076 sum -4.516 19.554 0.087 20.069 Atomic orbital electron populations 1.21761 0.78452 1.03959 1.01132 1.46586 1.05949 1.02984 1.79524 1.21877 0.97770 0.83728 1.02021 1.17561 0.91406 0.85490 0.91629 1.20843 0.91813 0.99155 1.13787 1.20947 1.00529 0.90657 0.93248 1.21223 0.93168 1.00125 1.16139 1.19056 0.91062 0.85547 0.93709 1.85951 1.37156 1.13003 1.88285 1.22273 0.93488 0.81476 1.00606 1.21860 0.99526 0.93183 1.03797 1.20034 0.88578 0.89603 0.77692 1.90373 1.17500 1.89589 1.51285 1.21303 0.96080 0.92647 1.49084 0.89264 1.27288 0.95047 1.06081 0.91025 1.70088 1.07978 1.31837 1.31812 0.85025 0.79172 0.74456 0.79789 1.18254 1.19257 1.17122 1.19826 1.00111 0.88718 1.18226 0.93091 0.88072 0.93161 0.92667 0.89359 0.90823 0.83195 0.83636 0.87146 0.93313 0.93293 0.89425 0.89410 0.90708 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 9.40 127.77 1.20 2.54 16 2 N -0.64 -12.17 3.41 -747.36 -2.55 -14.72 16 3 C 0.09 1.04 10.16 127.77 1.30 2.33 16 4 C 0.24 6.31 6.55 38.20 0.25 6.57 16 5 C -0.23 -5.68 9.21 22.42 0.21 -5.47 16 6 C -0.04 -0.98 10.03 22.24 0.22 -0.75 16 7 C -0.29 -10.06 9.04 22.39 0.20 -9.86 16 8 C 0.15 5.63 6.68 22.49 0.15 5.78 16 9 O -0.33 -13.54 10.13 -92.39 -0.94 -14.47 16 10 C 0.10 4.32 4.03 71.98 0.29 4.61 16 11 C -0.15 -6.78 5.94 29.85 0.18 -6.60 16 12 C 0.34 19.81 6.90 26.37 0.18 19.99 16 13 O -0.59 -38.95 14.50 -3.51 -0.05 -39.00 16 14 C -0.56 -31.49 9.22 23.50 0.22 -31.27 16 15 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 16 C 0.02 1.35 5.50 85.43 0.47 1.82 16 17 N -0.79 -46.72 11.72 21.91 0.26 -46.46 16 18 Si 1.00 39.48 29.56 68.60 2.03 41.51 16 19 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 20 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 21 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 22 C -0.25 -7.66 9.25 22.49 0.21 -7.45 16 23 H 0.05 0.81 7.95 -2.38 -0.02 0.80 16 24 H 0.10 0.89 7.79 -2.39 -0.02 0.87 16 25 H 0.05 0.81 7.95 -2.39 -0.02 0.79 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.09 0.65 7.92 -2.39 -0.02 0.63 16 28 H 0.07 0.82 6.19 -2.39 -0.01 0.80 16 29 H 0.15 2.65 6.14 -2.91 -0.02 2.63 16 30 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 31 H 0.11 4.22 6.29 -2.91 -0.02 4.21 16 32 H 0.05 2.28 7.63 -2.39 -0.02 2.26 16 33 H 0.05 2.29 7.60 -2.39 -0.02 2.27 16 34 H 0.09 3.78 8.14 -2.39 -0.02 3.76 16 35 H 0.09 3.79 8.14 -2.39 -0.02 3.77 16 36 H 0.28 14.93 8.29 -92.70 -0.77 14.16 16 37 H 0.13 3.79 6.73 -2.91 -0.02 3.77 16 Total: -1.00 -73.77 313.38 4.89 -68.88 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 1.07 Total: 22.04 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 5.08 Total: -17.77 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -2.29 Total: -61.18 kcal Atomic # 8 Polarization: -52.48 SS G_CDS: -0.99 Total: -53.47 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -73.77 4.89 -68.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041258883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.579 kcal (2) G-P(sol) polarization free energy of solvation -73.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds