Wall clock time and date at job start Mon Mar 30 2020 07:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46988 * 2 1 4 4 C 1.46505 * 119.99813 * 269.99884 * 3 2 1 5 5 C 1.50700 * 109.47057 * 270.00251 * 4 3 2 6 6 H 1.07999 * 120.00422 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99751 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99851 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00302 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46819 * 90.00267 * 9 7 5 11 11 H 1.48502 * 109.47379 * 210.00587 * 9 7 5 12 12 H 1.48497 * 109.47020 * 330.00752 * 9 7 5 13 13 C 1.34777 * 120.00181 * 90.00411 * 3 2 1 14 14 O 1.21589 * 120.00319 * 179.97438 * 13 3 2 15 15 N 1.34774 * 119.99735 * 359.97438 * 13 3 2 16 16 C 1.40196 * 119.99963 * 184.59374 * 15 13 3 17 17 C 1.38841 * 119.99406 * 324.90864 * 16 15 13 18 18 C 1.38071 * 120.00140 * 180.02562 * 17 16 15 19 19 C 1.38878 * 119.99975 * 359.97438 * 18 17 16 20 20 N 1.39918 * 120.00867 * 179.97438 * 19 18 17 21 21 C 1.38879 * 119.98818 * 0.26116 * 19 18 17 22 22 C 1.38070 * 119.99393 * 359.52824 * 21 19 18 23 23 H 1.08994 * 109.47030 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46722 * 300.00209 * 1 2 3 25 25 H 1.08999 * 109.46616 * 59.99830 * 1 2 3 26 26 H 1.08997 * 109.46990 * 240.00047 * 2 1 3 27 27 H 1.08996 * 109.47330 * 120.00320 * 2 1 3 28 28 H 1.08995 * 109.47117 * 30.00582 * 4 3 2 29 29 H 1.08995 * 109.46629 * 150.00570 * 4 3 2 30 30 H 0.97000 * 120.00057 * 179.97438 * 8 7 5 31 31 H 0.96999 * 119.99991 * 4.59694 * 15 13 3 32 32 H 1.07996 * 119.99737 * 0.02562 * 17 16 15 33 33 H 1.08005 * 119.99950 * 179.97438 * 18 17 16 34 34 H 0.97003 * 119.99466 * 0.02562 * 20 19 18 35 35 H 0.97000 * 120.00186 * 179.72515 * 20 19 18 36 36 H 1.07999 * 120.00305 * 179.72918 * 21 19 18 37 37 H 1.08000 * 120.00073 * 180.19183 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0963 7 6 4.1493 2.3904 -2.8775 8 7 5.3913 2.1833 -3.2574 9 14 3.0131 3.4359 -3.9288 10 1 3.1158 4.8560 -3.5069 11 1 3.4066 3.3135 -5.3555 12 1 1.6135 2.9693 -3.7596 13 6 2.2431 2.0166 1.1672 14 8 2.6488 3.1628 1.1672 15 7 2.0180 1.3814 2.3343 16 6 2.1590 2.0715 3.5465 17 6 3.1411 3.0435 3.6817 18 6 3.2804 3.7229 4.8756 19 6 2.4377 3.4344 5.9411 20 7 2.5790 4.1223 7.1513 21 6 1.4586 2.4586 5.8073 22 6 1.3168 1.7825 4.6118 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.5817 1.6878 -2.0284 29 1 2.0956 3.1410 -1.1384 30 1 5.7174 2.5737 -4.0833 31 1 1.7586 0.4467 2.3357 32 1 3.7961 3.2682 2.8529 33 1 4.0446 4.4788 4.9808 34 1 3.2654 4.8012 7.2458 35 1 1.9878 3.9235 7.8941 36 1 0.8060 2.2309 6.6372 37 1 0.5534 1.0258 4.5066 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042451286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:21 Heat of formation + Delta-G solvation = 8.985296 kcal Electronic energy + Delta-G solvation = -19597.139940 eV Core-core repulsion = 16567.741600 eV Total energy + Delta-G solvation = -3029.398340 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.17745 -38.64661 -35.73613 -34.92673 -33.03341 -32.35164 -30.68927 -30.31529 -28.23526 -26.71817 -23.07431 -22.94014 -22.64493 -21.26957 -19.23708 -17.86990 -17.01538 -16.85136 -16.71504 -16.48910 -15.05996 -14.72710 -14.08044 -13.85131 -13.77152 -13.62102 -13.42897 -13.11932 -12.93175 -12.51847 -12.28882 -12.21760 -11.90337 -11.43674 -11.13697 -10.97644 -10.75007 -10.69064 -10.46509 -10.13451 -9.52157 -9.29521 -9.08460 -8.68189 -8.55166 -7.73616 -6.98786 -6.05156 -4.03478 1.62003 1.79333 3.24499 3.33041 3.38760 3.40810 3.79085 3.92112 4.20633 4.41674 4.43976 5.05531 5.15692 5.23144 5.27605 5.51988 5.58060 5.62659 5.73436 5.79486 5.94105 6.13627 6.23092 6.28949 6.39321 6.47876 6.57652 6.77629 6.86126 6.96406 7.26821 7.33840 7.57702 7.60137 7.68361 7.77515 8.51765 8.56794 8.98509 9.25938 9.55732 11.08346 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.025491 B = 0.004953 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.143525 B = 5651.339658 C = 6346.493106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.108 3.892 3 N -0.605 5.605 4 C 0.231 3.769 5 C -0.528 4.528 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.702 3.298 14 O -0.572 6.572 15 N -0.694 5.694 16 C 0.121 3.879 17 C -0.070 4.070 18 C -0.177 4.177 19 C 0.188 3.812 20 N -0.886 5.886 21 C -0.182 4.182 22 C -0.107 4.107 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.037 0.963 30 H 0.264 0.736 31 H 0.399 0.601 32 H 0.145 0.855 33 H 0.119 0.881 34 H 0.395 0.605 35 H 0.393 0.607 36 H 0.118 0.882 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.931 -2.854 16.837 19.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 N -0.339 5.339 4 C 0.111 3.889 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.404 3.596 14 O -0.448 6.448 15 N -0.344 5.344 16 C 0.024 3.976 17 C -0.091 4.091 18 C -0.200 4.200 19 C 0.085 3.915 20 N -0.426 5.426 21 C -0.206 4.206 22 C -0.128 4.128 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.235 0.765 32 H 0.163 0.837 33 H 0.137 0.863 34 H 0.223 0.777 35 H 0.221 0.779 36 H 0.136 0.864 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.516 -2.015 16.495 19.150 hybrid contribution -0.552 0.202 -0.343 0.681 sum -10.068 -1.813 16.152 19.119 Atomic orbital electron populations 1.22256 0.96723 1.01540 1.02449 1.21377 0.93427 0.84066 1.02791 1.47226 1.67642 1.13369 1.05673 1.19571 0.97160 0.93235 0.78981 1.21373 0.95455 1.32748 1.07058 0.90771 1.24846 0.94986 0.95821 0.97353 1.69904 1.15157 1.45094 1.23567 0.86856 0.81466 0.81670 0.79709 1.19907 1.21141 1.19074 1.15876 0.78946 0.84694 0.80111 1.90869 1.51398 1.16980 1.85593 1.42818 1.74122 1.13892 1.03543 1.17368 0.96751 0.97921 0.85534 1.21264 0.96119 0.94652 0.97067 1.20515 1.02371 1.04310 0.92821 1.17758 0.94792 0.92355 0.86581 1.42409 1.41687 1.45663 1.12852 1.20222 1.01601 1.00362 0.98373 1.20567 0.98085 1.01331 0.92856 0.91977 0.92932 0.92076 0.89403 0.92113 0.95160 0.94470 0.92619 0.76456 0.83720 0.86255 0.77750 0.77942 0.86442 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.58 2.46 -180.80 -0.44 -13.02 16 4 C 0.23 5.70 4.23 -5.19 -0.02 5.68 16 5 C -0.53 -15.24 9.94 -34.44 -0.34 -15.58 16 6 H 0.07 2.36 8.06 -52.49 -0.42 1.93 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 9 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 10 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 13 C 0.70 14.97 8.12 -86.92 -0.71 14.27 16 14 O -0.57 -14.50 13.36 5.29 0.07 -14.43 16 15 N -0.69 -11.53 5.22 -14.17 -0.07 -11.61 16 16 C 0.12 1.95 6.30 -83.58 -0.53 1.43 16 17 C -0.07 -1.22 8.69 -39.42 -0.34 -1.56 16 18 C -0.18 -2.55 9.89 -39.41 -0.39 -2.94 16 19 C 0.19 2.33 6.76 -83.69 -0.57 1.76 16 20 N -0.89 -7.72 9.10 32.45 0.30 -7.42 16 21 C -0.18 -2.17 9.89 -39.41 -0.39 -2.56 16 22 C -0.11 -1.39 9.96 -39.42 -0.39 -1.78 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 27 H 0.06 0.79 6.30 -51.93 -0.33 0.46 16 28 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 29 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.40 5.32 6.52 -40.82 -0.27 5.06 16 32 H 0.15 2.96 6.22 -52.49 -0.33 2.63 16 33 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 34 H 0.39 2.87 8.84 -40.82 -0.36 2.51 16 35 H 0.39 2.58 8.84 -40.82 -0.36 2.22 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 311.47 15.07 4.69 4.69 Total: -1.00 -34.86 311.47 -7.69 -42.55 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -4.91 Total: 8.72 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -3.42 Total: 0.58 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.55 Total: -59.15 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.07 Total: -14.43 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.86 -7.69 -42.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.534 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds