Wall clock time and date at job start Mon Mar 30 2020 07:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46988 * 2 1 4 4 C 1.46505 * 119.99813 * 269.99884 * 3 2 1 5 5 C 1.50700 * 109.47057 * 270.00251 * 4 3 2 6 6 H 1.07999 * 120.00422 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99751 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99851 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00302 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46819 * 90.00267 * 9 7 5 11 11 H 1.48502 * 109.47379 * 210.00587 * 9 7 5 12 12 H 1.48497 * 109.47020 * 330.00752 * 9 7 5 13 13 C 1.34777 * 120.00181 * 90.00411 * 3 2 1 14 14 O 1.21589 * 120.00319 * 179.97438 * 13 3 2 15 15 N 1.34774 * 119.99735 * 359.97438 * 13 3 2 16 16 C 1.40196 * 119.99963 * 184.59374 * 15 13 3 17 17 C 1.38841 * 119.99406 * 324.90864 * 16 15 13 18 18 C 1.38071 * 120.00140 * 180.02562 * 17 16 15 19 19 C 1.38878 * 119.99975 * 359.97438 * 18 17 16 20 20 N 1.39918 * 120.00867 * 179.97438 * 19 18 17 21 21 C 1.38879 * 119.98818 * 0.26116 * 19 18 17 22 22 C 1.38070 * 119.99393 * 359.52824 * 21 19 18 23 23 H 1.08994 * 109.47030 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46722 * 300.00209 * 1 2 3 25 25 H 1.08999 * 109.46616 * 59.99830 * 1 2 3 26 26 H 1.08997 * 109.46990 * 240.00047 * 2 1 3 27 27 H 1.08996 * 109.47330 * 120.00320 * 2 1 3 28 28 H 1.08995 * 109.47117 * 30.00582 * 4 3 2 29 29 H 1.08995 * 109.46629 * 150.00570 * 4 3 2 30 30 H 0.97000 * 120.00057 * 179.97438 * 8 7 5 31 31 H 0.96999 * 119.99991 * 4.59694 * 15 13 3 32 32 H 1.07996 * 119.99737 * 0.02562 * 17 16 15 33 33 H 1.08005 * 119.99950 * 179.97438 * 18 17 16 34 34 H 0.97003 * 119.99466 * 0.02562 * 20 19 18 35 35 H 0.97000 * 120.00186 * 179.72515 * 20 19 18 36 36 H 1.07999 * 120.00305 * 179.72918 * 21 19 18 37 37 H 1.08000 * 120.00073 * 180.19183 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0963 7 6 4.1493 2.3904 -2.8775 8 7 5.3913 2.1833 -3.2574 9 14 3.0131 3.4359 -3.9288 10 1 3.1158 4.8560 -3.5069 11 1 3.4066 3.3135 -5.3555 12 1 1.6135 2.9693 -3.7596 13 6 2.2431 2.0166 1.1672 14 8 2.6488 3.1628 1.1672 15 7 2.0180 1.3814 2.3343 16 6 2.1590 2.0715 3.5465 17 6 3.1411 3.0435 3.6817 18 6 3.2804 3.7229 4.8756 19 6 2.4377 3.4344 5.9411 20 7 2.5790 4.1223 7.1513 21 6 1.4586 2.4586 5.8073 22 6 1.3168 1.7825 4.6118 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.5817 1.6878 -2.0284 29 1 2.0956 3.1410 -1.1384 30 1 5.7174 2.5737 -4.0833 31 1 1.7586 0.4467 2.3357 32 1 3.7961 3.2682 2.8529 33 1 4.0446 4.4788 4.9808 34 1 3.2654 4.8012 7.2458 35 1 1.9878 3.9235 7.8941 36 1 0.8060 2.2309 6.6372 37 1 0.5534 1.0258 4.5066 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042451286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:21 Heat of formation + Delta-G solvation = -16.628128 kcal Electronic energy + Delta-G solvation = -19598.250621 eV Core-core repulsion = 16567.741600 eV Total energy + Delta-G solvation = -3030.509021 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.60927 -39.86344 -37.19424 -36.32344 -34.87756 -33.81381 -31.86404 -31.71985 -29.83411 -28.10796 -24.69422 -24.32755 -23.85900 -22.55841 -20.72541 -19.30790 -19.07298 -18.21790 -17.81503 -17.45480 -16.70969 -16.44596 -15.72511 -15.30123 -14.92900 -14.84068 -14.76659 -14.48221 -14.21186 -13.99848 -13.78569 -13.45938 -13.32895 -13.16150 -12.59345 -12.41633 -12.29048 -12.04302 -11.94717 -11.79528 -11.72621 -10.93892 -10.81413 -10.33627 -9.80315 -9.41166 -8.32544 -8.03747 -6.37269 0.54939 0.65452 1.33330 1.38340 1.46394 1.81086 2.24974 2.32460 3.00527 3.04239 3.06597 3.14257 4.04837 4.07102 4.16644 4.37480 4.48901 4.53707 4.64916 4.72048 4.78953 4.88328 4.98972 4.99920 5.15759 5.27973 5.37394 5.40620 5.47935 5.53861 5.67312 5.71985 6.09787 6.11719 6.30330 6.63772 6.67956 7.09878 7.11835 7.24757 7.68769 8.84767 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.025491 B = 0.004953 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.143525 B = 5651.339658 C = 6346.493106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.612 5.612 4 C 0.243 3.757 5 C -0.535 4.535 6 H 0.026 0.974 7 C 0.011 3.989 8 N -0.947 5.947 9 Si 0.949 3.051 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.236 1.236 13 C 0.693 3.307 14 O -0.624 6.624 15 N -0.673 5.673 16 C 0.086 3.914 17 C -0.099 4.099 18 C -0.193 4.193 19 C 0.198 3.802 20 N -0.869 5.869 21 C -0.178 4.178 22 C -0.091 4.091 23 H 0.097 0.903 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.053 0.947 29 H 0.017 0.983 30 H 0.268 0.732 31 H 0.415 0.585 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.403 0.597 35 H 0.409 0.591 36 H 0.156 0.844 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.234 -3.600 18.815 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.347 5.347 4 C 0.120 3.880 5 C -0.574 4.574 6 H 0.044 0.956 7 C -0.187 4.187 8 N -0.587 5.587 9 Si 0.771 3.229 10 H -0.204 1.204 11 H -0.199 1.199 12 H -0.159 1.159 13 C 0.395 3.605 14 O -0.504 6.504 15 N -0.324 5.324 16 C -0.010 4.010 17 C -0.121 4.121 18 C -0.217 4.217 19 C 0.093 3.907 20 N -0.410 5.410 21 C -0.201 4.201 22 C -0.112 4.112 23 H 0.116 0.884 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.255 0.745 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.232 0.768 35 H 0.239 0.761 36 H 0.174 0.826 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.856 -2.822 18.561 22.754 hybrid contribution 0.567 0.411 -0.741 1.019 sum -12.289 -2.411 17.819 21.780 Atomic orbital electron populations 1.22161 0.93765 1.03736 1.02103 1.21722 0.95763 0.81170 1.03681 1.47221 1.67844 1.15241 1.04358 1.19206 0.94708 0.92757 0.81309 1.21599 0.97186 1.31994 1.06640 0.95570 1.25846 0.96734 0.97167 0.98933 1.70059 1.17481 1.46662 1.24502 0.85709 0.80537 0.78917 0.77727 1.20367 1.19902 1.15928 1.16147 0.78693 0.84336 0.81300 1.90832 1.53567 1.19483 1.86539 1.42483 1.73176 1.14403 1.02386 1.17612 0.98228 0.98994 0.86166 1.21033 0.97032 0.96950 0.97062 1.20546 1.03613 1.04689 0.92806 1.17844 0.93841 0.92151 0.86894 1.42387 1.41833 1.44877 1.11921 1.20679 1.01303 0.99117 0.98959 1.20880 0.97322 1.01254 0.91713 0.88407 0.92421 0.93271 0.90340 0.89530 0.92896 0.96470 0.92299 0.74516 0.88399 0.85761 0.76781 0.76131 0.82613 0.82907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 10.24 71.98 0.74 -2.84 16 2 C 0.10 2.96 5.93 86.38 0.51 3.47 16 3 N -0.61 -25.93 2.46 -844.19 -2.07 -28.01 16 4 C 0.24 12.20 4.23 85.63 0.36 12.56 16 5 C -0.54 -32.36 9.94 25.60 0.25 -32.11 16 6 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 7 C 0.01 0.66 5.47 84.65 0.46 1.12 16 8 N -0.95 -61.04 13.96 21.45 0.30 -60.74 16 9 Si 0.95 45.34 27.47 68.60 1.88 47.22 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 13 C 0.69 30.67 8.12 179.06 1.45 32.12 16 14 O -0.62 -33.75 13.36 -4.00 -0.05 -33.80 16 15 N -0.67 -22.40 5.22 -317.02 -1.66 -24.05 16 16 C 0.09 2.76 6.30 38.09 0.24 3.00 16 17 C -0.10 -3.66 8.69 22.37 0.19 -3.47 16 18 C -0.19 -5.64 9.89 22.38 0.22 -5.42 16 19 C 0.20 4.42 6.76 38.16 0.26 4.68 16 20 N -0.87 -12.30 9.10 -51.26 -0.47 -12.77 16 21 C -0.18 -3.53 9.89 22.38 0.22 -3.31 16 22 C -0.09 -2.08 9.96 22.37 0.22 -1.86 16 23 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.08 2.49 8.07 -2.39 -0.02 2.47 16 27 H 0.09 2.09 6.30 -2.39 -0.02 2.08 16 28 H 0.05 2.41 7.13 -2.39 -0.02 2.40 16 29 H 0.02 0.93 6.85 -2.39 -0.02 0.92 16 30 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 31 H 0.42 10.46 6.52 -92.71 -0.60 9.85 16 32 H 0.10 4.48 6.22 -2.91 -0.02 4.46 16 33 H 0.12 3.30 8.06 -2.91 -0.02 3.28 16 34 H 0.40 4.78 8.84 -92.71 -0.82 3.96 16 35 H 0.41 3.62 8.84 -92.71 -0.82 2.80 16 36 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 37 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -82.48 311.47 1.89 -80.59 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -1.19 Total: 23.60 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 5.14 Total: 7.95 kcal Atomic # 7 Polarization: -121.67 SS G_CDS: -3.90 Total: -125.57 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.05 Total: -33.80 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.22 kcal Total: -82.48 1.89 -80.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.966 kcal (2) G-P(sol) polarization free energy of solvation -82.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds