Wall clock time and date at job start Mon Mar 30 2020 06:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47307 * 2 1 4 4 N 1.46506 * 109.46807 * 119.99936 * 2 1 3 5 5 C 1.46500 * 120.00056 * 116.79240 * 4 2 1 6 6 C 1.50705 * 109.46920 * 89.99762 * 5 4 2 7 7 H 1.07998 * 119.99869 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99846 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00138 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00044 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47369 * 59.99663 * 10 8 6 12 12 H 1.48499 * 109.47319 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47024 * 299.99799 * 10 8 6 14 14 C 1.39009 * 119.99897 * 296.79228 * 4 2 1 15 15 C 1.39237 * 119.92135 * 270.58882 * 14 4 2 16 16 C 1.37118 * 120.06907 * 179.76392 * 15 14 4 17 17 C 1.39848 * 119.92723 * 0.51349 * 16 15 14 18 18 C 1.47377 * 120.07683 * 179.71794 * 17 16 15 19 19 O 1.21518 * 120.00121 * 180.02562 * 18 17 16 20 20 O 1.34758 * 119.99712 * 0.02828 * 18 17 16 21 21 C 1.39862 * 119.85359 * 359.74116 * 17 16 15 22 22 C 1.37112 * 119.92163 * 0.02562 * 21 17 16 23 23 H 1.08994 * 109.47088 * 305.62652 * 1 2 3 24 24 H 1.09003 * 109.46989 * 65.62456 * 1 2 3 25 25 H 1.09006 * 109.47372 * 185.62644 * 1 2 3 26 26 H 1.08998 * 109.46810 * 239.99294 * 2 1 3 27 27 H 1.08996 * 109.47146 * 174.50962 * 3 2 1 28 28 H 1.09004 * 109.47251 * 294.50876 * 3 2 1 29 29 H 1.09007 * 109.47251 * 54.50603 * 3 2 1 30 30 H 1.09000 * 109.47435 * 209.99497 * 5 4 2 31 31 H 1.09005 * 109.46956 * 330.00069 * 5 4 2 32 32 H 0.96999 * 120.00382 * 179.97438 * 9 8 6 33 33 H 1.08002 * 119.96970 * 0.02562 * 15 14 4 34 34 H 1.08000 * 120.03235 * 180.23480 * 16 15 14 35 35 H 0.96709 * 116.99842 * 179.97438 * 20 18 17 36 36 H 1.07997 * 120.04405 * 179.97438 * 21 17 16 37 37 H 1.08000 * 119.96543 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8016 -1.9214 1.0630 6 6 4.2660 -1.5774 0.9715 7 1 4.5815 -0.5452 1.0083 8 6 5.2028 -2.5804 0.8395 9 7 4.8185 -3.8373 0.7941 10 14 7.0180 -2.1541 0.7267 11 1 7.4346 -1.4335 1.9565 12 1 7.8120 -3.4016 0.5916 13 1 7.2504 -1.2881 -0.4571 14 6 1.7383 -0.1780 2.4577 15 6 2.6078 0.7380 3.0438 16 6 2.3321 1.2492 4.2859 17 6 1.1817 0.8415 4.9686 18 6 0.8854 1.3841 6.3064 19 8 -0.1144 1.0285 6.8986 20 8 1.7231 2.2748 6.8729 21 6 0.3132 -0.0829 4.3791 22 6 0.5923 -0.5866 3.1348 23 1 -0.3633 0.5986 0.8353 24 1 -0.3633 0.4241 -0.9361 25 1 -0.3634 -1.0228 0.1008 26 1 1.8933 -0.5139 -0.8899 27 1 3.1255 1.4440 0.0983 28 1 1.7592 1.9271 -0.9351 29 1 1.5986 1.9839 0.8367 30 1 2.6313 -2.5565 1.9324 31 1 2.4956 -2.4510 0.1607 32 1 5.4775 -4.5429 0.7009 33 1 3.4981 1.0495 2.5178 34 1 3.0049 1.9626 4.7383 35 1 1.4866 2.6028 7.7513 36 1 -0.5758 -0.4003 4.9038 37 1 -0.0776 -1.3007 2.6792 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042529261.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:39 Heat of formation + Delta-G solvation = -62.492359 kcal Electronic energy + Delta-G solvation = -19780.310475 eV Core-core repulsion = 16715.519881 eV Total energy + Delta-G solvation = -3064.790595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.25006 -38.88684 -36.33986 -35.93958 -32.98150 -31.66220 -30.79642 -29.57417 -26.74404 -26.44404 -23.98891 -22.41750 -21.98073 -21.13078 -19.45924 -18.00797 -17.22910 -16.37881 -15.64446 -15.52962 -15.27701 -14.74387 -14.24533 -14.17600 -13.67293 -13.21676 -13.00966 -12.86309 -12.29926 -12.25085 -12.06769 -11.79027 -11.75670 -11.47176 -11.15314 -11.05005 -10.86714 -10.60506 -10.57810 -10.36185 -10.33516 -9.97617 -9.52052 -8.70210 -8.44271 -8.29169 -6.97967 -6.00075 -4.08853 0.96761 1.76991 2.75341 3.14158 3.29511 3.34774 3.36560 4.12498 4.22585 4.46093 5.11459 5.24507 5.28725 5.34207 5.41521 5.64536 5.72348 5.78192 5.87022 5.95211 5.97966 6.19312 6.22478 6.35429 6.37044 6.43207 6.57367 6.61147 6.67410 6.75517 7.04760 7.06531 7.27193 7.43871 7.87610 7.96514 8.28640 8.42262 8.70561 9.01953 9.58170 11.03134 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.005993 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.583416 B = 4670.987855 C = 5460.369306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 C -0.162 4.162 4 N -0.680 5.680 5 C 0.275 3.725 6 C -0.528 4.528 7 H 0.058 0.942 8 C 0.059 3.941 9 N -0.898 5.898 10 Si 0.891 3.109 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.260 3.740 15 C -0.139 4.139 16 C -0.056 4.056 17 C -0.162 4.162 18 C 0.532 3.468 19 O -0.527 6.527 20 O -0.514 6.514 21 C -0.048 4.048 22 C -0.152 4.152 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.020 0.980 31 H 0.025 0.975 32 H 0.262 0.738 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.409 0.591 36 H 0.129 0.871 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.159 10.488 4.269 13.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.067 3.933 3 C -0.221 4.221 4 N -0.407 5.407 5 C 0.156 3.844 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.537 5.537 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.166 3.834 15 C -0.159 4.159 16 C -0.075 4.075 17 C -0.163 4.163 18 C 0.378 3.622 19 O -0.418 6.418 20 O -0.326 6.326 21 C -0.067 4.067 22 C -0.172 4.172 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.266 0.734 36 H 0.147 0.853 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.224 10.003 3.959 12.959 hybrid contribution 1.035 0.322 0.604 1.241 sum -6.189 10.325 4.563 12.874 Atomic orbital electron populations 1.22327 0.97644 1.01616 1.00769 1.20493 0.91680 0.92136 0.88996 1.22266 1.02075 0.97274 1.00490 1.46396 1.64652 1.30327 0.99329 1.18950 0.88799 0.79886 0.96733 1.21717 0.92180 0.93091 1.49762 0.92408 1.24974 0.98887 0.94952 0.95414 1.69917 1.34244 0.99048 1.50487 0.86673 0.85214 0.77620 0.78570 1.20327 1.21342 1.20316 1.17753 0.89870 0.88913 0.86851 1.21761 1.00460 0.98427 0.95265 1.21188 0.94731 0.97459 0.94108 1.18873 1.00045 1.04736 0.92638 1.21000 0.79597 0.75350 0.86254 1.90857 1.27890 1.58850 1.64216 1.84611 1.53083 1.57147 1.37721 1.20918 0.97837 0.93547 0.94385 1.21581 0.98878 1.01829 0.94948 0.93207 0.92994 0.92606 0.90049 0.91973 0.93164 0.93382 0.96209 0.95699 0.92790 0.85045 0.85237 0.73373 0.85294 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 8.83 37.16 0.33 -2.00 16 2 C 0.17 2.87 3.36 -67.93 -0.23 2.64 16 3 C -0.16 -2.44 8.59 37.15 0.32 -2.12 16 4 N -0.68 -13.29 2.29 -165.55 -0.38 -13.67 16 5 C 0.28 6.68 5.40 -5.19 -0.03 6.66 16 6 C -0.53 -13.96 9.39 -34.44 -0.32 -14.28 16 7 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -25.79 13.29 55.43 0.74 -25.05 16 10 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.26 4.70 4.10 -83.87 -0.34 4.36 16 15 C -0.14 -2.38 8.88 -39.62 -0.35 -2.73 16 16 C -0.06 -0.85 9.58 -39.39 -0.38 -1.23 16 17 C -0.16 -2.48 5.88 -104.97 -0.62 -3.10 16 18 C 0.53 7.66 8.26 34.45 0.28 7.94 16 19 O -0.53 -8.73 17.12 -19.28 -0.33 -9.06 16 20 O -0.51 -5.68 12.67 -40.65 -0.51 -6.19 16 21 C -0.05 -0.74 9.56 -39.38 -0.38 -1.12 16 22 C -0.15 -2.49 9.07 -39.62 -0.36 -2.85 16 23 H 0.05 0.69 7.48 -51.93 -0.39 0.31 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 1.45 7.82 -51.93 -0.41 1.04 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.70 7.38 -51.93 -0.38 0.32 16 30 H 0.02 0.53 8.05 -51.93 -0.42 0.11 16 31 H 0.03 0.64 7.95 -51.93 -0.41 0.23 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.13 2.32 8.06 -52.49 -0.42 1.90 16 34 H 0.13 1.71 7.60 -52.49 -0.40 1.31 16 35 H 0.41 2.50 9.11 45.56 0.42 2.92 16 36 H 0.13 1.84 7.64 -52.49 -0.40 1.43 16 37 H 0.13 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 320.40 15.07 4.83 4.83 Total: -1.00 -30.14 320.40 -7.33 -37.46 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -4.47 Total: 1.95 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -2.17 Total: -6.30 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.36 Total: -38.72 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.85 Total: -15.25 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.14 -7.33 -37.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042529261.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.031 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds