Wall clock time and date at job start Mon Mar 30 2020 06:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47307 * 2 1 4 4 N 1.46506 * 109.46807 * 119.99936 * 2 1 3 5 5 C 1.46500 * 120.00056 * 116.79240 * 4 2 1 6 6 C 1.50705 * 109.46920 * 89.99762 * 5 4 2 7 7 H 1.07998 * 119.99869 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99846 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00138 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00044 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47369 * 59.99663 * 10 8 6 12 12 H 1.48499 * 109.47319 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47024 * 299.99799 * 10 8 6 14 14 C 1.39009 * 119.99897 * 296.79228 * 4 2 1 15 15 C 1.39237 * 119.92135 * 270.58882 * 14 4 2 16 16 C 1.37118 * 120.06907 * 179.76392 * 15 14 4 17 17 C 1.39848 * 119.92723 * 0.51349 * 16 15 14 18 18 C 1.47377 * 120.07683 * 179.71794 * 17 16 15 19 19 O 1.21518 * 120.00121 * 180.02562 * 18 17 16 20 20 O 1.34758 * 119.99712 * 0.02828 * 18 17 16 21 21 C 1.39862 * 119.85359 * 359.74116 * 17 16 15 22 22 C 1.37112 * 119.92163 * 0.02562 * 21 17 16 23 23 H 1.08994 * 109.47088 * 305.62652 * 1 2 3 24 24 H 1.09003 * 109.46989 * 65.62456 * 1 2 3 25 25 H 1.09006 * 109.47372 * 185.62644 * 1 2 3 26 26 H 1.08998 * 109.46810 * 239.99294 * 2 1 3 27 27 H 1.08996 * 109.47146 * 174.50962 * 3 2 1 28 28 H 1.09004 * 109.47251 * 294.50876 * 3 2 1 29 29 H 1.09007 * 109.47251 * 54.50603 * 3 2 1 30 30 H 1.09000 * 109.47435 * 209.99497 * 5 4 2 31 31 H 1.09005 * 109.46956 * 330.00069 * 5 4 2 32 32 H 0.96999 * 120.00382 * 179.97438 * 9 8 6 33 33 H 1.08002 * 119.96970 * 0.02562 * 15 14 4 34 34 H 1.08000 * 120.03235 * 180.23480 * 16 15 14 35 35 H 0.96709 * 116.99842 * 179.97438 * 20 18 17 36 36 H 1.07997 * 120.04405 * 179.97438 * 21 17 16 37 37 H 1.08000 * 119.96543 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8016 -1.9214 1.0630 6 6 4.2660 -1.5774 0.9715 7 1 4.5815 -0.5452 1.0083 8 6 5.2028 -2.5804 0.8395 9 7 4.8185 -3.8373 0.7941 10 14 7.0180 -2.1541 0.7267 11 1 7.4346 -1.4335 1.9565 12 1 7.8120 -3.4016 0.5916 13 1 7.2504 -1.2881 -0.4571 14 6 1.7383 -0.1780 2.4577 15 6 2.6078 0.7380 3.0438 16 6 2.3321 1.2492 4.2859 17 6 1.1817 0.8415 4.9686 18 6 0.8854 1.3841 6.3064 19 8 -0.1144 1.0285 6.8986 20 8 1.7231 2.2748 6.8729 21 6 0.3132 -0.0829 4.3791 22 6 0.5923 -0.5866 3.1348 23 1 -0.3633 0.5986 0.8353 24 1 -0.3633 0.4241 -0.9361 25 1 -0.3634 -1.0228 0.1008 26 1 1.8933 -0.5139 -0.8899 27 1 3.1255 1.4440 0.0983 28 1 1.7592 1.9271 -0.9351 29 1 1.5986 1.9839 0.8367 30 1 2.6313 -2.5565 1.9324 31 1 2.4956 -2.4510 0.1607 32 1 5.4775 -4.5429 0.7009 33 1 3.4981 1.0495 2.5178 34 1 3.0049 1.9626 4.7383 35 1 1.4866 2.6028 7.7513 36 1 -0.5758 -0.4003 4.9038 37 1 -0.0776 -1.3007 2.6792 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042529261.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:38 Heat of formation + Delta-G solvation = -79.562111 kcal Electronic energy + Delta-G solvation = -19781.050675 eV Core-core repulsion = 16715.519881 eV Total energy + Delta-G solvation = -3065.530795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.40116 -40.17128 -37.67304 -37.02448 -34.94769 -33.07899 -32.06533 -31.14136 -28.25144 -27.89342 -25.42165 -23.98121 -23.41857 -22.34007 -20.80077 -19.09330 -18.51781 -18.29113 -17.14902 -16.87270 -16.58540 -16.10594 -15.95430 -15.42331 -14.93390 -14.54168 -14.37782 -14.23947 -13.88863 -13.59922 -13.48242 -13.32821 -12.91472 -12.86259 -12.70558 -12.53667 -12.39589 -12.21885 -11.98771 -11.83457 -11.70008 -11.50790 -11.47014 -10.54807 -9.95845 -9.62672 -8.64140 -8.00349 -6.25061 -0.27860 0.50283 1.41735 1.42795 1.50385 1.56571 2.13459 2.41355 2.80024 2.86127 3.16987 3.90584 4.03405 4.13537 4.24049 4.40885 4.45162 4.53402 4.64253 4.66850 4.86403 4.94357 5.04891 5.10328 5.15307 5.21615 5.27481 5.31647 5.37313 5.41693 5.53583 5.59502 5.74278 5.80429 5.84870 6.25612 6.64228 6.99146 7.01180 7.23056 7.48896 8.93516 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.005993 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.583416 B = 4670.987855 C = 5460.369306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 C -0.151 4.151 4 N -0.682 5.682 5 C 0.293 3.707 6 C -0.533 4.533 7 H 0.058 0.942 8 C 0.007 3.993 9 N -0.933 5.933 10 Si 0.955 3.045 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.269 1.269 14 C 0.234 3.766 15 C -0.149 4.149 16 C -0.046 4.046 17 C -0.164 4.164 18 C 0.541 3.459 19 O -0.551 6.551 20 O -0.504 6.504 21 C -0.046 4.046 22 C -0.153 4.153 23 H 0.053 0.947 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.053 0.947 30 H -0.011 1.011 31 H 0.002 0.998 32 H 0.263 0.737 33 H 0.122 0.878 34 H 0.153 0.847 35 H 0.432 0.568 36 H 0.141 0.859 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.082 12.431 5.043 15.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.059 3.941 3 C -0.210 4.210 4 N -0.409 5.409 5 C 0.172 3.828 6 C -0.572 4.572 7 H 0.076 0.924 8 C -0.191 4.191 9 N -0.574 5.574 10 Si 0.781 3.219 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.194 1.194 14 C 0.141 3.859 15 C -0.169 4.169 16 C -0.064 4.064 17 C -0.165 4.165 18 C 0.387 3.613 19 O -0.444 6.444 20 O -0.317 6.317 21 C -0.065 4.065 22 C -0.173 4.173 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.007 0.993 31 H 0.020 0.980 32 H 0.072 0.928 33 H 0.140 0.860 34 H 0.171 0.829 35 H 0.294 0.706 36 H 0.159 0.841 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.155 12.000 4.751 14.757 hybrid contribution 0.975 -0.226 0.433 1.090 sum -6.181 11.774 5.183 14.272 Atomic orbital electron populations 1.22186 0.95301 1.01402 1.02219 1.20686 0.93506 0.92652 0.87266 1.22140 1.00636 0.96159 1.02031 1.46175 1.64441 1.29256 1.01032 1.18428 0.88775 0.81483 0.94121 1.22019 0.93319 0.93004 1.48857 0.92399 1.25789 1.03272 0.94823 0.95219 1.70045 1.35589 1.00009 1.51735 0.85653 0.79993 0.77413 0.78864 1.19727 1.21204 1.19400 1.17927 0.91139 0.90244 0.86564 1.21715 1.00117 0.98911 0.96151 1.21335 0.94828 0.97151 0.93105 1.19079 0.99787 1.04341 0.93327 1.20714 0.79384 0.75434 0.85734 1.90859 1.28972 1.59844 1.64712 1.84547 1.51906 1.55895 1.39371 1.21053 0.98264 0.93262 0.93891 1.21580 0.98534 1.01885 0.95318 0.92796 0.90550 0.93488 0.91860 0.93958 0.90671 0.92823 0.99270 0.97995 0.92828 0.85978 0.82920 0.70586 0.84077 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 8.83 71.98 0.64 -3.51 16 2 C 0.16 5.44 3.36 44.99 0.15 5.59 16 3 C -0.15 -4.40 8.59 71.98 0.62 -3.78 16 4 N -0.68 -27.23 2.29 -677.68 -1.55 -28.79 16 5 C 0.29 14.82 5.40 85.63 0.46 15.28 16 6 C -0.53 -28.74 9.39 25.60 0.24 -28.50 16 7 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 8 C 0.01 0.39 5.46 84.65 0.46 0.86 16 9 N -0.93 -54.86 13.29 21.45 0.28 -54.57 16 10 Si 0.96 43.37 29.54 68.60 2.03 45.39 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 14 C 0.23 8.49 4.10 38.48 0.16 8.65 16 15 C -0.15 -5.01 8.88 22.25 0.20 -4.81 16 16 C -0.05 -1.29 9.58 22.40 0.21 -1.08 16 17 C -0.16 -4.71 5.88 -20.09 -0.12 -4.83 16 18 C 0.54 14.17 8.26 70.23 0.58 14.75 16 19 O -0.55 -17.05 17.12 19.78 0.34 -16.71 16 20 O -0.50 -9.39 12.67 -56.69 -0.72 -10.11 16 21 C -0.05 -1.36 9.56 22.40 0.21 -1.14 16 22 C -0.15 -4.96 9.07 22.24 0.20 -4.76 16 23 H 0.05 1.42 7.48 -2.39 -0.02 1.40 16 24 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.05 1.34 8.14 -2.38 -0.02 1.33 16 26 H 0.06 2.31 7.82 -2.39 -0.02 2.29 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.05 1.49 7.38 -2.38 -0.02 1.47 16 30 H -0.01 -0.60 8.05 -2.39 -0.02 -0.62 16 31 H 0.00 0.11 7.95 -2.38 -0.02 0.09 16 32 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 33 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 34 H 0.15 3.58 7.60 -2.91 -0.02 3.56 16 35 H 0.43 3.71 9.11 -74.05 -0.67 3.04 16 36 H 0.14 3.80 7.64 -2.91 -0.02 3.78 16 37 H 0.13 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -64.95 320.40 4.79 -60.16 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.39 Total: 11.90 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 4.02 Total: -7.28 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -1.27 Total: -83.36 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.38 Total: -26.82 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -64.95 4.79 -60.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042529261.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.404 kcal (2) G-P(sol) polarization free energy of solvation -64.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds