Wall clock time and date at job start Mon Mar 30 2020 06:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47033 * 2 1 4 4 N 1.46505 * 109.47275 * 119.99693 * 2 1 3 5 5 C 1.46497 * 119.99814 * 120.00004 * 4 2 1 6 6 C 1.50700 * 109.47180 * 270.00370 * 5 4 2 7 7 H 1.07997 * 120.00095 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99947 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00100 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99907 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47096 * 90.00570 * 10 8 6 12 12 H 1.48500 * 109.46979 * 209.99851 * 10 8 6 13 13 H 1.48498 * 109.47070 * 329.99884 * 10 8 6 14 14 C 1.34774 * 120.00063 * 300.00202 * 4 2 1 15 15 O 1.21514 * 120.00170 * 179.97438 * 14 4 2 16 16 O 1.34682 * 120.00145 * 0.02562 * 14 4 2 17 17 C 1.35931 * 116.99931 * 185.95208 * 16 14 4 18 18 C 1.38725 * 120.05589 * 70.03418 * 17 16 14 19 19 C 1.38146 * 119.94660 * 179.97438 * 18 17 16 20 20 C 1.38268 * 120.05370 * 359.97438 * 19 18 17 21 21 C 1.38273 * 120.11042 * 0.02562 * 20 19 18 22 22 C 1.38143 * 120.05323 * 359.97438 * 21 20 19 23 23 H 1.09004 * 109.47275 * 300.00030 * 1 2 3 24 24 H 1.08996 * 109.47478 * 59.99908 * 1 2 3 25 25 H 1.08999 * 109.47056 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47125 * 240.00339 * 2 1 3 27 27 H 1.08995 * 109.47117 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46932 * 300.00141 * 3 2 1 29 29 H 1.09004 * 109.47115 * 59.99872 * 3 2 1 30 30 H 1.09000 * 109.47297 * 30.00177 * 5 4 2 31 31 H 1.08998 * 109.46970 * 150.00024 * 5 4 2 32 32 H 0.97005 * 120.00448 * 180.02562 * 9 8 6 33 33 H 1.07998 * 120.02436 * 359.69810 * 18 17 16 34 34 H 1.08001 * 119.97572 * 179.97438 * 19 18 17 35 35 H 1.07995 * 119.94734 * 180.02562 * 20 19 18 36 36 H 1.07995 * 119.97126 * 179.97438 * 21 20 19 37 37 H 1.08003 * 120.03041 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8606 -1.8817 1.0618 6 6 1.9893 -3.1104 1.0157 7 1 0.9156 -3.0138 1.0805 8 6 2.5630 -4.3580 0.8919 9 7 1.8027 -5.4304 0.8521 10 14 4.4202 -4.5251 0.7805 11 1 4.9865 -4.6738 2.1452 12 1 4.7618 -5.7216 -0.0301 13 1 4.9886 -3.3130 0.1379 14 6 1.6927 -0.2301 2.4203 15 8 2.0974 -0.8031 3.4125 16 8 0.9180 0.8646 2.5439 17 6 0.7296 1.3487 3.8000 18 6 1.7790 1.9537 4.4761 19 6 1.5848 2.4454 5.7525 20 6 0.3457 2.3353 6.3559 21 6 -0.7019 1.7326 5.6841 22 6 -0.5128 1.2395 4.4076 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.4419 -1.8138 0.1423 31 1 3.5362 -1.9470 1.9147 32 1 2.2063 -6.3082 0.7654 33 1 2.7481 2.0363 4.0068 34 1 2.4016 2.9161 6.2794 35 1 0.1957 2.7206 7.3536 36 1 -1.6688 1.6475 6.1577 37 1 -1.3312 0.7684 3.8834 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:49 Heat of formation + Delta-G solvation = -40.687552 kcal Electronic energy + Delta-G solvation = -20195.493865 eV Core-core repulsion = 17131.648798 eV Total energy + Delta-G solvation = -3063.845067 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.86032 -38.68946 -36.80277 -35.76020 -32.92341 -31.22435 -30.94673 -30.06294 -27.69218 -26.84241 -23.92526 -22.68409 -21.92718 -21.74542 -19.80043 -17.77115 -17.00099 -16.61537 -16.22970 -16.07287 -15.21325 -14.46336 -14.34841 -13.93611 -13.74605 -13.46335 -13.40520 -13.01466 -12.55447 -12.46290 -12.16453 -11.87118 -11.69566 -11.58708 -11.32729 -11.05014 -10.84411 -10.59350 -10.46578 -10.38366 -10.16783 -9.90709 -9.52633 -8.93942 -8.62005 -8.58572 -7.89205 -6.11475 -4.11092 1.19003 1.39608 2.83428 3.27262 3.32851 3.35184 3.43164 3.84972 4.36141 4.41529 4.92540 4.93519 5.09851 5.20442 5.26018 5.39512 5.47775 5.51047 5.56558 5.74683 5.90671 5.99239 6.04992 6.14778 6.22698 6.33997 6.45420 6.48214 6.48691 6.59551 6.64817 6.72084 6.89418 7.18611 7.26608 7.53564 8.11439 8.42863 8.91040 9.02646 9.47586 11.01743 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.005924 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.060615 B = 4725.628977 C = 5172.273876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.139 3.861 3 C -0.169 4.169 4 N -0.565 5.565 5 C 0.230 3.770 6 C -0.532 4.532 7 H 0.077 0.923 8 C 0.074 3.926 9 N -0.895 5.895 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.642 3.358 15 O -0.554 6.554 16 O -0.308 6.308 17 C 0.115 3.885 18 C -0.124 4.124 19 C -0.107 4.107 20 C -0.128 4.128 21 C -0.107 4.107 22 C -0.120 4.120 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.094 0.906 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 17.086 3.345 17.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.035 3.965 3 C -0.227 4.227 4 N -0.303 5.303 5 C 0.111 3.889 6 C -0.571 4.571 7 H 0.095 0.905 8 C -0.128 4.128 9 N -0.533 5.533 10 Si 0.701 3.299 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.190 1.190 14 C 0.396 3.604 15 O -0.440 6.440 16 O -0.221 6.221 17 C 0.073 3.927 18 C -0.143 4.143 19 C -0.125 4.125 20 C -0.146 4.146 21 C -0.125 4.125 22 C -0.138 4.138 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.860 16.679 3.650 17.174 hybrid contribution 0.907 -0.404 -0.074 0.996 sum -0.953 16.275 3.576 16.690 Atomic orbital electron populations 1.22266 0.95135 1.03030 1.02030 1.21046 0.94643 0.92365 0.88415 1.22320 1.01152 0.96520 1.02695 1.47164 1.52039 1.29718 1.01412 1.19793 0.90105 0.81519 0.97490 1.21330 0.95391 0.89175 1.51186 0.90504 1.24829 0.98029 0.95552 0.94424 1.69890 1.35326 0.98185 1.49892 0.86879 0.86090 0.78087 0.78813 1.19841 1.20942 1.18994 1.18335 0.78157 0.78691 0.85202 1.90996 1.57173 1.59198 1.36654 1.84433 1.66324 1.43470 1.27898 1.18407 0.93964 0.96324 0.84048 1.21351 0.98591 0.98889 0.95434 1.20974 0.97430 0.99736 0.94364 1.21156 0.93201 1.00182 1.00024 1.20984 0.99323 0.98314 0.93925 1.21166 0.97161 1.00522 0.94972 0.91518 0.92174 0.91586 0.88752 0.92738 0.91770 0.91268 0.94344 0.94288 0.92477 0.85752 0.85652 0.85847 0.85439 0.85205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 9.12 37.15 0.34 -2.32 16 2 C 0.14 2.36 3.28 -67.93 -0.22 2.14 16 3 C -0.17 -2.33 9.12 37.16 0.34 -1.99 16 4 N -0.56 -12.09 2.41 -173.22 -0.42 -12.51 16 5 C 0.23 5.61 4.20 -5.20 -0.02 5.59 16 6 C -0.53 -15.22 9.94 -34.44 -0.34 -15.57 16 7 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 8 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 9 N -0.89 -27.45 13.96 55.43 0.77 -26.67 16 10 Si 0.87 21.30 27.47 -169.99 -4.67 16.63 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 14 C 0.64 14.12 7.54 54.05 0.41 14.53 16 15 O -0.55 -14.23 15.42 -19.28 -0.30 -14.52 16 16 O -0.31 -5.65 5.33 -24.73 -0.13 -5.78 16 17 C 0.12 1.94 5.25 -39.22 -0.21 1.73 16 18 C -0.12 -1.88 9.40 -39.44 -0.37 -2.25 16 19 C -0.11 -1.33 10.04 -39.60 -0.40 -1.73 16 20 C -0.13 -1.45 10.04 -39.56 -0.40 -1.85 16 21 C -0.11 -1.30 10.04 -39.60 -0.40 -1.70 16 22 C -0.12 -1.76 9.99 -39.43 -0.39 -2.16 16 23 H 0.07 1.08 6.00 -51.93 -0.31 0.76 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.09 1.56 7.79 -51.93 -0.40 1.16 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.00 6.00 -51.93 -0.31 0.69 16 30 H 0.04 0.88 6.98 -51.93 -0.36 0.51 16 31 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 32 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 311.59 15.07 4.70 4.70 Total: -1.00 -33.36 311.59 -6.95 -40.31 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.14 Total: 1.35 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -1.76 Total: -3.51 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.36 Total: -39.18 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.43 Total: -20.30 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.36 -6.95 -40.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.377 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds