Wall clock time and date at job start Mon Mar 30 2020 06:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47033 * 2 1 4 4 N 1.46505 * 109.47275 * 119.99693 * 2 1 3 5 5 C 1.46497 * 119.99814 * 120.00004 * 4 2 1 6 6 C 1.50700 * 109.47180 * 270.00370 * 5 4 2 7 7 H 1.07997 * 120.00095 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99947 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00100 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99907 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47096 * 90.00570 * 10 8 6 12 12 H 1.48500 * 109.46979 * 209.99851 * 10 8 6 13 13 H 1.48498 * 109.47070 * 329.99884 * 10 8 6 14 14 C 1.34774 * 120.00063 * 300.00202 * 4 2 1 15 15 O 1.21514 * 120.00170 * 179.97438 * 14 4 2 16 16 O 1.34682 * 120.00145 * 0.02562 * 14 4 2 17 17 C 1.35931 * 116.99931 * 185.95208 * 16 14 4 18 18 C 1.38725 * 120.05589 * 70.03418 * 17 16 14 19 19 C 1.38146 * 119.94660 * 179.97438 * 18 17 16 20 20 C 1.38268 * 120.05370 * 359.97438 * 19 18 17 21 21 C 1.38273 * 120.11042 * 0.02562 * 20 19 18 22 22 C 1.38143 * 120.05323 * 359.97438 * 21 20 19 23 23 H 1.09004 * 109.47275 * 300.00030 * 1 2 3 24 24 H 1.08996 * 109.47478 * 59.99908 * 1 2 3 25 25 H 1.08999 * 109.47056 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47125 * 240.00339 * 2 1 3 27 27 H 1.08995 * 109.47117 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46932 * 300.00141 * 3 2 1 29 29 H 1.09004 * 109.47115 * 59.99872 * 3 2 1 30 30 H 1.09000 * 109.47297 * 30.00177 * 5 4 2 31 31 H 1.08998 * 109.46970 * 150.00024 * 5 4 2 32 32 H 0.97005 * 120.00448 * 180.02562 * 9 8 6 33 33 H 1.07998 * 120.02436 * 359.69810 * 18 17 16 34 34 H 1.08001 * 119.97572 * 179.97438 * 19 18 17 35 35 H 1.07995 * 119.94734 * 180.02562 * 20 19 18 36 36 H 1.07995 * 119.97126 * 179.97438 * 21 20 19 37 37 H 1.08003 * 120.03041 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8606 -1.8817 1.0618 6 6 1.9893 -3.1104 1.0157 7 1 0.9156 -3.0138 1.0805 8 6 2.5630 -4.3580 0.8919 9 7 1.8027 -5.4304 0.8521 10 14 4.4202 -4.5251 0.7805 11 1 4.9865 -4.6738 2.1452 12 1 4.7618 -5.7216 -0.0301 13 1 4.9886 -3.3130 0.1379 14 6 1.6927 -0.2301 2.4203 15 8 2.0974 -0.8031 3.4125 16 8 0.9180 0.8646 2.5439 17 6 0.7296 1.3487 3.8000 18 6 1.7790 1.9537 4.4761 19 6 1.5848 2.4454 5.7525 20 6 0.3457 2.3353 6.3559 21 6 -0.7019 1.7326 5.6841 22 6 -0.5128 1.2395 4.4076 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.4419 -1.8138 0.1423 31 1 3.5362 -1.9470 1.9147 32 1 2.2063 -6.3082 0.7654 33 1 2.7481 2.0363 4.0068 34 1 2.4016 2.9161 6.2794 35 1 0.1957 2.7206 7.3536 36 1 -1.6688 1.6475 6.1577 37 1 -1.3312 0.7684 3.8834 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:49 Heat of formation + Delta-G solvation = -61.136340 kcal Electronic energy + Delta-G solvation = -20196.380591 eV Core-core repulsion = 17131.648798 eV Total energy + Delta-G solvation = -3064.731793 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.32938 -39.96774 -38.18842 -37.40714 -35.01233 -32.93649 -31.98325 -31.24253 -29.58225 -28.05977 -25.57495 -23.76491 -23.62174 -23.07540 -21.26549 -19.19106 -19.15278 -18.08394 -17.60303 -17.43249 -16.73680 -16.09756 -15.73831 -15.49456 -15.01738 -14.89934 -14.54834 -14.44349 -14.34415 -13.93644 -13.58406 -13.30414 -13.11134 -12.77964 -12.67633 -12.64063 -12.36232 -12.29087 -11.99593 -11.86942 -11.74563 -11.65352 -11.53803 -10.84066 -9.98342 -9.74649 -9.61548 -8.34892 -6.41398 0.03411 0.35767 1.31100 1.37671 1.39865 1.46765 1.75672 2.30351 2.69648 2.97952 3.07912 3.90708 3.91854 3.97025 4.19489 4.19916 4.28362 4.43157 4.45940 4.53826 4.69085 4.78707 4.81445 4.88008 4.92185 4.96754 5.00374 5.22330 5.33053 5.36147 5.39347 5.42217 5.47889 5.52397 5.58079 6.01803 6.20438 6.46680 6.59771 7.18631 7.38832 8.82113 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.005924 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.060615 B = 4725.628977 C = 5172.273876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 C -0.157 4.157 4 N -0.571 5.571 5 C 0.238 3.762 6 C -0.540 4.540 7 H 0.027 0.973 8 C 0.014 3.986 9 N -0.944 5.944 10 Si 0.947 3.053 11 H -0.276 1.276 12 H -0.274 1.274 13 H -0.233 1.233 14 C 0.641 3.359 15 O -0.601 6.601 16 O -0.294 6.294 17 C 0.067 3.933 18 C -0.140 4.140 19 C -0.107 4.107 20 C -0.116 4.116 21 C -0.106 4.106 22 C -0.137 4.137 23 H 0.060 0.940 24 H 0.098 0.902 25 H 0.030 0.970 26 H 0.100 0.900 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.269 0.731 33 H 0.119 0.881 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 19.443 3.742 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 C -0.214 4.214 4 N -0.309 5.309 5 C 0.118 3.882 6 C -0.579 4.579 7 H 0.046 0.954 8 C -0.184 4.184 9 N -0.583 5.583 10 Si 0.769 3.231 11 H -0.202 1.202 12 H -0.199 1.199 13 H -0.156 1.156 14 C 0.396 3.604 15 O -0.492 6.492 16 O -0.206 6.206 17 C 0.025 3.975 18 C -0.159 4.159 19 C -0.125 4.125 20 C -0.134 4.134 21 C -0.123 4.123 22 C -0.155 4.155 23 H 0.079 0.921 24 H 0.117 0.883 25 H 0.050 0.950 26 H 0.118 0.882 27 H 0.076 0.924 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.137 0.863 34 H 0.174 0.826 35 H 0.182 0.818 36 H 0.178 0.822 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.830 19.097 4.013 19.532 hybrid contribution 0.404 -1.067 -0.083 1.144 sum -0.426 18.030 3.930 18.459 Atomic orbital electron populations 1.22204 0.94699 1.01212 1.03613 1.21436 0.95135 0.94115 0.86754 1.22219 1.01316 0.94009 1.03890 1.47240 1.51757 1.29112 1.02782 1.19525 0.89721 0.81085 0.97910 1.21511 0.93716 0.91532 1.51135 0.95428 1.25836 1.04023 0.94860 0.93723 1.70047 1.38035 0.98985 1.51275 0.85731 0.78772 0.79637 0.78935 1.20152 1.19874 1.15582 1.18529 0.77963 0.79182 0.84724 1.90936 1.59096 1.60892 1.38229 1.84465 1.65048 1.41772 1.29328 1.18891 0.95637 0.98563 0.84389 1.21497 0.97995 0.99612 0.96780 1.21396 0.99058 0.98879 0.93191 1.21681 0.92145 0.98187 1.01349 1.21421 1.01193 0.97069 0.92641 1.21390 0.96505 1.01315 0.96335 0.92081 0.88347 0.95028 0.88151 0.92372 0.88351 0.92134 0.91644 0.95624 0.92156 0.86331 0.82606 0.81803 0.82204 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.10 9.12 71.98 0.66 -4.45 16 2 C 0.13 4.27 3.28 44.99 0.15 4.41 16 3 C -0.16 -4.02 9.12 71.98 0.66 -3.36 16 4 N -0.57 -24.94 2.41 -932.33 -2.24 -27.19 16 5 C 0.24 11.74 4.20 85.63 0.36 12.10 16 6 C -0.54 -32.13 9.94 25.60 0.25 -31.87 16 7 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 8 C 0.01 0.82 5.47 84.65 0.46 1.28 16 9 N -0.94 -59.87 13.96 21.45 0.30 -59.57 16 10 Si 0.95 43.92 27.47 68.60 1.88 45.80 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.23 -9.52 6.54 99.48 0.65 -8.87 16 14 C 0.64 29.23 7.54 129.79 0.98 30.21 16 15 O -0.60 -32.27 15.42 19.80 0.31 -31.97 16 16 O -0.29 -11.13 5.33 0.29 0.00 -11.13 16 17 C 0.07 2.30 5.25 22.50 0.12 2.42 16 18 C -0.14 -4.24 9.40 22.36 0.21 -4.03 16 19 C -0.11 -2.43 10.04 22.25 0.22 -2.20 16 20 C -0.12 -2.25 10.04 22.29 0.22 -2.02 16 21 C -0.11 -2.32 10.04 22.26 0.22 -2.09 16 22 C -0.14 -4.04 9.99 22.36 0.22 -3.81 16 23 H 0.06 2.01 6.00 -2.38 -0.01 1.99 16 24 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.10 3.21 7.79 -2.39 -0.02 3.19 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.10 1.86 8.14 -2.38 -0.02 1.85 16 29 H 0.06 1.68 6.00 -2.38 -0.01 1.66 16 30 H 0.07 2.87 6.98 -2.39 -0.02 2.86 16 31 H 0.03 1.34 6.85 -2.39 -0.02 1.32 16 32 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 33 H 0.12 3.58 8.06 -2.91 -0.02 3.55 16 34 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -77.37 311.59 5.98 -71.39 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 1.00 Total: 16.07 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 4.74 Total: -3.41 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -1.94 Total: -86.75 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: 0.31 Total: -43.10 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -77.37 5.98 -71.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.254 kcal (2) G-P(sol) polarization free energy of solvation -77.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds